Arid3a (AT-rich interaction domain 3A) - Rat Genome Database

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Gene: Arid3a (AT-rich interaction domain 3A) Rattus norvegicus
Analyze
Symbol: Arid3a
Name: AT-rich interaction domain 3A
RGD ID: 1305299
Description: Predicted to enable several functions, including chromatin binding activity; identical protein binding activity; and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in membrane raft. Predicted to be active in nucleus. Orthologous to human ARID3A (AT-rich interaction domain 3A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AT rich interactive domain 3A (Bright like); AT-rich interactive domain-containing protein 3A; dead ringer homolog 1; LOC314616; MGC189073
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,403,161 - 10,431,551 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,405,631 - 10,427,926 (-)EnsemblGRCr8
mRatBN7.279,755,291 - 9,781,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,755,294 - 9,780,599 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,637,502 - 12,659,280 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,512,824 - 14,534,596 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,373,998 - 12,395,761 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,573,604 - 12,602,407 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,574,198 - 12,601,674 (-)Ensemblrn6Rnor6.0
Rnor_5.0712,745,711 - 12,771,710 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,269,055 - 11,290,551 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,930,752 - 7,952,277 (-)NCBICelera
RGSC_v3.1711,269,305 - 11,293,860 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dibromoethane  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
2-nitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
doxycycline  (ISO)
emodin  (ISO)
endosulfan  (EXP)
erastin  (ISO)
folic acid  (ISO)
FR900359  (ISO)
glycidol  (ISO)
hydrazine  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
menadione  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methyl carbamate  (ISO)
methylmercury chloride  (ISO)
N-Nitrosopyrrolidine  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium chloride  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
quinolin-8-ol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
membrane raft  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15456761   PMID:21955986  


Genomics

Comparative Map Data
Arid3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,403,161 - 10,431,551 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl710,405,631 - 10,427,926 (-)EnsemblGRCr8
mRatBN7.279,755,291 - 9,781,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,755,294 - 9,780,599 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx712,637,502 - 12,659,280 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,512,824 - 14,534,596 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,373,998 - 12,395,761 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,573,604 - 12,602,407 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,574,198 - 12,601,674 (-)Ensemblrn6Rnor6.0
Rnor_5.0712,745,711 - 12,771,710 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4711,269,055 - 11,290,551 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera77,930,752 - 7,952,277 (-)NCBICelera
RGSC_v3.1711,269,305 - 11,293,860 (-)NCBI
Cytogenetic Map7q11NCBI
ARID3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819925,732 - 975,939 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19924,528 - 975,939 (+)Ensemblhg38GRCh38
GRCh3719926,035 - 975,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619877,037 - 923,816 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3419880,328 - 923,801NCBI
Celera19858,387 - 905,149 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19699,675 - 746,206 (+)NCBIHuRef
CHM1_119925,610 - 972,376 (+)NCBICHM1_1
T2T-CHM13v2.019888,464 - 938,643 (+)NCBIT2T-CHM13v2.0
Arid3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,762,877 - 79,790,852 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,762,877 - 79,790,852 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381079,927,043 - 79,955,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,927,043 - 79,955,018 (+)Ensemblmm10GRCm38
MGSCv371079,389,817 - 79,417,757 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361079,330,201 - 79,358,141 (+)NCBIMGSCv36mm8
Celera1080,941,882 - 80,969,819 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Arid3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,884,598 - 6,908,574 (-)Ensembl
ChiLan1.0NW_0049554956,884,077 - 6,912,625 (-)NCBIChiLan1.0ChiLan1.0
ARID3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,256,289 - 5,306,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,495,504 - 4,545,237 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019157,094 - 207,676 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119904,414 - 948,493 (+)NCBIPanPan1.1PanPan1.1panPan2
ARID3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,724,747 - 57,746,637 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,722,917 - 57,746,622 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2057,526,366 - 57,548,245 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02058,464,582 - 58,488,486 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,467,102 - 58,488,703 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,519,351 - 57,543,374 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,001,151 - 58,023,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,201,962 - 58,226,018 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arid3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,416,306 - 217,440,038 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588394,469 - 415,893 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936588389,213 - 418,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,431,087 - 77,464,628 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1277,428,618 - 77,464,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,532,702 - 77,569,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16667,426 - 727,987 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6680,965 - 727,843 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660818,192,284 - 8,255,148 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,635,383 - 7,666,416 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248287,636,211 - 7,666,868 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Arid3a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11154,923,733 - 154,949,170 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arid3a
478 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:73
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000026708
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 354 192 11 139 79 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026708   ⟹   ENSRNOP00000026708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,405,928 - 10,427,926 (-)Ensembl
mRatBN7.2 Ensembl79,755,294 - 9,777,295 (-)Ensembl
Rnor_6.0 Ensembl712,576,365 - 12,598,370 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089009   ⟹   ENSRNOP00000073120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl712,574,198 - 12,598,183 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl712,579,988 - 12,583,118 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093489   ⟹   ENSRNOP00000076345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl710,405,631 - 10,427,926 (-)Ensembl
mRatBN7.2 Ensembl79,776,565 - 9,780,599 (-)Ensembl
Rnor_6.0 Ensembl712,597,640 - 12,601,674 (-)Ensembl
RefSeq Acc Id: NM_001108066   ⟹   NP_001101536
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,405,925 - 10,427,926 (-)NCBI
mRatBN7.279,755,291 - 9,777,295 (-)NCBI
Rnor_6.0712,576,370 - 12,598,370 (-)NCBI
Rnor_5.0712,745,711 - 12,771,710 (-)NCBI
RGSC_v3.4711,269,055 - 11,290,551 (-)RGD
Celera77,930,752 - 7,952,277 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240902   ⟹   XP_006240964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,428,151 (-)NCBI
mRatBN7.279,755,542 - 9,777,525 (-)NCBI
Rnor_6.0712,573,604 - 12,598,667 (-)NCBI
Rnor_5.0712,745,711 - 12,771,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240904   ⟹   XP_006240966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,430,985 (-)NCBI
mRatBN7.279,755,542 - 9,780,290 (-)NCBI
Rnor_6.0712,573,604 - 12,601,404 (-)NCBI
Rnor_5.0712,745,711 - 12,771,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006240905   ⟹   XP_006240967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,431,551 (-)NCBI
mRatBN7.279,755,542 - 9,781,260 (-)NCBI
Rnor_6.0712,573,604 - 12,602,407 (-)NCBI
Rnor_5.0712,745,711 - 12,771,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765169   ⟹   XP_008763391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,430,956 (-)NCBI
mRatBN7.279,755,542 - 9,780,333 (-)NCBI
Rnor_6.0712,573,604 - 12,601,403 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594812   ⟹   XP_017450301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,431,540 (-)NCBI
mRatBN7.279,755,542 - 9,781,260 (-)NCBI
Rnor_6.0712,573,604 - 12,602,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078974   ⟹   XP_038934902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,429,500 (-)NCBI
mRatBN7.279,755,542 - 9,778,907 (-)NCBI
RefSeq Acc Id: XM_039078976   ⟹   XP_038934904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8710,403,161 - 10,428,202 (-)NCBI
mRatBN7.279,755,542 - 9,778,907 (-)NCBI
RefSeq Acc Id: NP_001101536   ⟸   NM_001108066
- UniProtKB: B5DEX9 (UniProtKB/TrEMBL),   E9PTY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240967   ⟸   XM_006240905
- Peptide Label: isoform X1
- UniProtKB: B5DEX9 (UniProtKB/TrEMBL),   E9PTY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240966   ⟸   XM_006240904
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006240964   ⟸   XM_006240902
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008763391   ⟸   XM_008765169
- Peptide Label: isoform X1
- UniProtKB: B5DEX9 (UniProtKB/TrEMBL),   E9PTY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450301   ⟸   XM_017594812
- Peptide Label: isoform X1
- UniProtKB: B5DEX9 (UniProtKB/TrEMBL),   E9PTY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073120   ⟸   ENSRNOT00000089009
Ensembl Acc Id: ENSRNOP00000026708   ⟸   ENSRNOT00000026708
Ensembl Acc Id: ENSRNOP00000076345   ⟸   ENSRNOT00000093489
RefSeq Acc Id: XP_038934902   ⟸   XM_039078974
- Peptide Label: isoform X1
- UniProtKB: E9PTY2 (UniProtKB/TrEMBL),   B5DEX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934904   ⟸   XM_039078976
- Peptide Label: isoform X1
- UniProtKB: E9PTY2 (UniProtKB/TrEMBL),   B5DEX9 (UniProtKB/TrEMBL)
Protein Domains
ARID   REKLES

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEX9-F1-model_v2 AlphaFold B5DEX9 1-594 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305299 AgrOrtholog
BioCyc Gene G2FUF-34902 BioCyc
Ensembl Genes ENSRNOG00000026435 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026708 ENTREZGENE
  ENSRNOT00000026708.9 UniProtKB/TrEMBL
  ENSRNOT00000093489.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
InterPro ARI3A/B/C UniProtKB/TrEMBL
  ARID/BRIGHT_DNA-bd UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  REKLES_domain UniProtKB/TrEMBL
KEGG Report rno:314616 UniProtKB/TrEMBL
NCBI Gene 314616 ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A UniProtKB/TrEMBL
  PTHR15348 UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
PhenoGen Arid3a PhenoGen
PROSITE ARID UniProtKB/TrEMBL
  REKLES UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026435 RatGTEx
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
Superfamily-SCOP ARID UniProtKB/TrEMBL
UniProt A0A1W2Q6P0_RAT UniProtKB/TrEMBL
  B5DEX9 ENTREZGENE, UniProtKB/TrEMBL
  E9PTY2 ENTREZGENE
UniProt Secondary E9PTY2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Arid3a  AT-rich interaction domain 3A  Arid3a  AT rich interactive domain 3A (Bright like)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Arid3a  AT rich interactive domain 3A (Bright like)   Arid3a_predicted  AT rich interactive domain 3A (Bright like) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Arid3a_predicted  AT rich interactive domain 3A (Bright like) (predicted)      Symbol and Name status set to approved 70820 APPROVED