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Gene: Limch1 (LIM and calponin homology domains 1) Rattus norvegicus

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Symbol:

Limch1

Name:

LIM and calponin homology domains 1

RGD ID:

1305269

Description:

Predicted to enable myosin II head/neck binding activity. Predicted to be involved in several processes, including cytoplasmic actin-based contraction involved in cell motility; positive regulation of stress fiber assembly; and regulation of focal adhesion assembly. Predicted to be part of myosin II complex. Predicted to be active in stress fiber. Orthologous to human LIMCH1 (LIM and calponin homology domains 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LIM and calponin homology domains-containing protein 1; LOC305332; RGD1305269; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIMCH1 (LIM and calponin homology domains 1)	HGNC	Ensembl, HomoloGene, Inparanoid, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Limch1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Limch1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIMCH1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIMCH1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Limch1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIMCH1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIMCH1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Limch1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Limch1 (LIM and calponin homology domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Limch1 (LIM and calponin homology domains 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Limch1 (LIM and calponin homology domains 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LIMCH1 (LIM and calponin homology domains 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LIMCH1 (LIM and calponin homology domains 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	limch1a (LIM and calponin homology domains 1a)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	limch1a (LIM and calponin homology domains 1a)	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	limch1b (LIM and calponin homology domains 1b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	limch1b (LIM and calponin homology domains 1b)	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	lim-8	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	lim-8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	limch1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	limch1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl				GRCr8
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	41,458,625 - 41,770,890 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	42,758,712 - 43,070,966 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	41,239,523 - 41,551,800 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	42,760,363 - 43,072,976 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	42,762,587 - 43,072,843 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	42,558,732 - 42,868,387 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	43,722,254 - 44,049,555 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	40,270,045 - 40,579,190 (-)	NCBI		Celera
RGSC_v3.1	14	43,681,141 - 44,052,100 (-)	NCBI
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

malignant mesothelioma (ISO)

substance-related disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

casticin (ISO)

chlordecone (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dimethylarsinous acid (ISO)

dioxygen (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethanol (ISO)

etoposide (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

hexadecanoic acid (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mitomycin C (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

raloxifene (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc dichloride (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actomyosin structure organization (IEA)

cytoplasmic actin-based contraction involved in cell motility (ISO)

negative regulation of cell migration (ISO)

positive regulation of macromolecule metabolic process (IEA)

positive regulation of protein phosphorylation (ISO)

positive regulation of stress fiber assembly (IBA,ISO)

regulation of focal adhesion assembly (IBA,ISO)

regulation of primary metabolic process (IEA)

Cellular Component

actin cytoskeleton (IEA,ISO)

myosin II complex (ISO)

stress fiber (IBA,ISO)

Molecular Function

actin binding (IEA)

metal ion binding (IEA)

myosin II head/neck binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17291445	PMID:20607275	PMID:23106098	PMID:24625528	PMID:28228547	PMID:30361391	PMID:35352799

Genomics

Comparative Map Data

Limch1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl				GRCr8
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	41,458,625 - 41,770,890 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	42,758,712 - 43,070,966 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	41,239,523 - 41,551,800 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	42,760,363 - 43,072,976 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	42,762,587 - 43,072,843 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	42,558,732 - 42,868,387 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	43,722,254 - 44,049,555 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	40,270,045 - 40,579,190 (-)	NCBI		Celera
RGSC_v3.1	14	43,681,141 - 44,052,100 (-)	NCBI
Cytogenetic Map	14	p11	NCBI

LIMCH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	41,359,607 - 41,700,044 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	41,359,574 - 41,700,049 (+)	Ensembl			hg38	GRCh38
GRCh37	4	41,361,624 - 41,702,061 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	41,057,561 - 41,395,767 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	41,806,095 - 42,146,075 (+)	NCBI		Celera
Cytogenetic Map	4	p13	NCBI
HuRef	4	40,684,478 - 41,024,427 (+)	NCBI		HuRef
CHM1_1	4	41,363,356 - 41,702,595 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	41,333,394 - 41,673,808 (+)	NCBI		T2T-CHM13v2.0

Limch1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,903,232 - 67,214,502 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	66,903,170 - 67,214,501 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	66,745,889 - 67,057,159 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	66,745,827 - 67,057,158 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	67,137,079 - 67,448,398 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	67,025,084 - 67,335,232 (+)	NCBI		MGSCv36	mm8
Celera	5	64,048,465 - 64,361,964 (+)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	35.95	NCBI

Limch1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	5,983,842 - 6,305,014 (-)	Ensembl
ChiLan1.0	NW_004955443	5,984,027 - 6,305,014 (-)	NCBI	ChiLan1.0	ChiLan1.0

LIMCH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	41,545,334 - 41,884,903 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	41,738,614 - 42,078,297 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	35,685,904 - 36,025,582 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	41,533,508 - 41,873,694 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	41,533,560 - 41,873,694 (+)	Ensembl			panPan2	panpan1.1

LIMCH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	38,518,653 - 38,816,804 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	38,518,644 - 38,814,369 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	38,495,198 - 38,793,400 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	39,008,734 - 39,307,552 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	39,008,727 - 39,306,490 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	38,699,406 - 38,997,408 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	38,809,648 - 39,105,367 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	39,284,402 - 39,582,653 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Limch1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	37,365,504 - 37,677,692 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	8,620,858 - 8,930,495 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	8,620,543 - 8,932,731 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMCH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	32,433,318 - 32,792,546 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	32,433,035 - 32,792,553 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	34,048,380 - 34,408,111 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMCH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	8,656,502 - 8,994,669 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	8,653,600 - 8,994,634 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	54,972,000 - 55,314,409 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Limch1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	25,382,274 - 25,578,503 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624761	25,375,501 - 25,706,756 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Limch1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	23,871,928 - 24,181,227 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Limch1
2019 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	231
Count of miRNA genes:	156
Interacting mature miRNAs:	190
Transcripts:	ENSRNOT00000064263
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Markers in Region

D14Rat15

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,275,590 - 41,275,734 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,924,142 - 42,924,285	NCBI	Rnor6.0
Rnor_5.0	14	42,722,129 - 42,722,272	UniSTS	Rnor5.0
RGSC_v3.4	14	43,898,015 - 43,898,159	RGD	RGSC3.4
RGSC_v3.4	14	43,898,016 - 43,898,159	UniSTS	RGSC3.4
Celera	14	40,431,554 - 40,431,697	UniSTS
RGSC_v3.1	14	43,900,406 - 43,900,550	RGD
RH 2.0 Map	14	451.1	RGD
SHRSP x BN Map	14	28.3	RGD
Cytogenetic Map	14	p11	UniSTS

D14Got51

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,366,647 - 41,366,913 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,014,455 - 43,014,718	NCBI	Rnor6.0
Rnor_5.0	14	42,811,195 - 42,811,458	UniSTS	Rnor5.0
RGSC_v3.4	14	43,991,314 - 43,991,578	RGD	RGSC3.4
RGSC_v3.4	14	43,991,315 - 43,991,578	UniSTS	RGSC3.4
Celera	14	40,522,492 - 40,522,755	UniSTS
RGSC_v3.1	14	43,993,705 - 43,993,969	RGD
RH 2.0 Map	14	447.9	RGD
Cytogenetic Map	14	p11	UniSTS

SHGC-68207

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,114,959 - 41,115,051 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,762,744 - 42,762,835	NCBI	Rnor6.0
Rnor_5.0	14	42,561,113 - 42,561,204	UniSTS	Rnor5.0
RGSC_v3.4	14	43,724,637 - 43,724,728	UniSTS	RGSC3.4
Celera	14	40,270,202 - 40,270,293	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH45623

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,376,531 - 41,376,709 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,024,337 - 43,024,514	NCBI	Rnor6.0
Rnor_5.0	14	42,821,077 - 42,821,254	UniSTS	Rnor5.0
RGSC_v3.4	14	44,001,195 - 44,001,372	UniSTS	RGSC3.4
Celera	14	40,532,390 - 40,532,567	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH133758

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,158,440 - 41,158,621 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,805,924 - 42,806,104	NCBI	Rnor6.0
Rnor_5.0	14	42,604,687 - 42,604,867	UniSTS	Rnor5.0
RGSC_v3.4	14	43,768,803 - 43,768,983	UniSTS	RGSC3.4
Celera	14	40,313,187 - 40,313,367	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH142364

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,114,655 - 41,114,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,762,440 - 42,762,594	NCBI	Rnor6.0
Rnor_5.0	14	42,560,809 - 42,560,963	UniSTS	Rnor5.0
RGSC_v3.4	14	43,724,333 - 43,724,487	UniSTS	RGSC3.4
Celera	14	40,269,898 - 40,270,052	UniSTS
Cytogenetic Map	14	p11	UniSTS

BE102897

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,152,760 - 41,152,942 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,800,244 - 42,800,425	NCBI	Rnor6.0
Rnor_5.0	14	42,599,007 - 42,599,188	UniSTS	Rnor5.0
RGSC_v3.4	14	43,763,123 - 43,763,304	UniSTS	RGSC3.4
Celera	14	40,307,563 - 40,307,744	UniSTS
Cytogenetic Map	14	p11	UniSTS

BI301572

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,358,346 - 41,358,544 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,005,828 - 43,006,025	NCBI	Rnor6.0
Rnor_5.0	14	42,804,091 - 42,804,288	UniSTS	Rnor5.0
RGSC_v3.4	14	43,983,239 - 43,983,436	UniSTS	RGSC3.4
Celera	14	40,514,158 - 40,514,355	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH137678

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,423,717 - 41,423,933 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	43,071,581 - 43,071,796	NCBI	Rnor6.0
Rnor_5.0	14	42,866,991 - 42,867,206	UniSTS	Rnor5.0
RGSC_v3.4	14	44,048,293 - 44,048,508	UniSTS	RGSC3.4
Celera	14	40,577,928 - 40,578,143	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH138802

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,113,740 - 41,113,898 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,761,525 - 42,761,682	NCBI	Rnor6.0
Rnor_5.0	14	42,559,894 - 42,560,051	UniSTS	Rnor5.0
RGSC_v3.4	14	43,723,418 - 43,723,575	UniSTS	RGSC3.4
Celera	14	40,268,983 - 40,269,140	UniSTS
Cytogenetic Map	14	p11	UniSTS

AI013730

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	41,115,246 - 41,115,426 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,763,031 - 42,763,210	NCBI	Rnor6.0
Rnor_5.0	14	42,561,400 - 42,561,579	UniSTS	Rnor5.0
RGSC_v3.4	14	43,724,924 - 43,725,103	UniSTS	RGSC3.4
Celera	14	40,270,489 - 40,270,668	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	47	59	6	311	147	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ226534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064263 ⟹ ENSRNOP00000063345

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl
Rnor_6.0 Ensembl	14	42,762,587 - 43,072,843 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095221 ⟹ ENSRNOP00000076732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097408 ⟹ ENSRNOP00000097815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,551,886 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,114,803 - 41,198,052 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100682 ⟹ ENSRNOP00000096454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,120,773 - 41,282,803 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103342 ⟹ ENSRNOP00000093427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114959 ⟹ ENSRNOP00000093239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118493 ⟹ ENSRNOP00000087540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	41,466,433 - 41,778,837 (-)	Ensembl
mRatBN7.2 Ensembl	14	41,114,803 - 41,425,191 (-)	Ensembl

RefSeq Acc Id:

NM_001191678 ⟹ NP_001178607

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI
Rnor_6.0	14	42,762,587 - 43,072,843 (-)	NCBI
Rnor_5.0	14	42,558,732 - 42,868,387 (-)	NCBI
Celera	14	40,270,045 - 40,579,190 (-)	NCBI

Sequence:

show sequence

ATGGCTTGCCCCGCTCTCGGTCTGGAAGTCCTTCAACCCCTGCAGCCCGAACCACCTCCGGAGC
CTGCCTTCGCCGAGGCACAGAAGTGGATCGAGCAAGTCACGGGTCGAAGTTTTGGTGACAAAGA
CTTCCGGACAGGACTAGAGAATGGAATCCTTCTTTGCGAGTTGCTGAATGCTATAAAGCCAGGA
CTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGATTGGACAACACCATCTTATTCT
TGAGAGGCTGTAAAGAGCTTGGCCTTAAAGAATCTCAACTCTTTGACCCAAGTGACCTCCAGGA
TACTTCCAACAGGGTCACTGTCAAGAACTTCGATTATAGCAGGAAGCTGAAAAACGTGTTGGTG
ACCATTTACTGGCTGGGGAAAGCTGCAAATAGCTGCACATCCTACAGTGGAACCACACTGAACC
TGAAGGAGTTCGAAGGACTGTTGGCTCAGATGCGAAAGGAGACTGATGACATTGAAAGCCCCAA
GCGCAGCATCCGAGACAGTGGCTACATCGACTGCTGGGACTCTGAACGCAGTGACTCCCTTTCT
CCTCCTCGCCACGGCCGGGATGACTCCTTTGACAGCCTGGATTCTTTTGGCTCCCGCTCCAGGC
AGACACCTTCACCAGATGTAGTTCTCAGGGGAAGCAGTGATGGAAGAGGAAGTGATTCTGAATC
AGACTTGCCCCACCGGAAGTTGCCAGATGTGAAGAAAGATGATATGTCCGCACGACGGACTTCT
CATGGTGAGCCGAAATCAGCAGTGCCTTTTAACCAGTACCTCCCGAACAAAAGCAACCAGACAG
CCTATGTCCCAGCCCCTCTGAGAAAGAAGAAGGCGGAGCGGGAAGAATACAGGAAGAGCTGGAG
TACGGCCACCTCCCCCCTGGGCGGGGAAAGGCCCTTCAGATACGGTCCGAGAACTCCTGTGTCA
GATGACGCAGAGAGCACGAGTATGTTTGACATGCGGTGTGAGGAGGAGGCAGCGGTGCTGCCGC
ACAGCAGGGCCCGCCAGGAGCAGCTGCAGCTGATAAATAACCAGCTGAGGGAAGAGGACGACAA
ATGGCAAGATGACCTGGCTCGCTGGAAGAGCCGTCGAAGAAGCGCTTCCCAGGACTTAATCAAG
AAAGAGGAAGAAAGGAAAAAAATGGAGAAGTTGATGTCTGGAGAAGATGGGACAAGTGAACGGA
GGAAAAGCATCAAAACTTACAGAGAAATTGTCCAAGAAAAGGAGCGGAGAGAGAGGGAGCTGCA
CGAGGCATATAAGAATGCAAGGTCACAGGAGGAGGCAGAGGGGATCCTCCAGCAATACATCGAG
AGGTTCACCATCAGTGAGGCTGTCCTCGAACGCTTGGAGATGCCAAAAATTCTGGAAAGAAGCC
ATTCAACAGAGCCAAACGTATCCTCCTTCCCCAACGACCCCAGCCCCATGAAATACTTGCGTCA
GCAGTCACTGCCCCCGCCCAAGTTCACTGCCACGGTTGAGACTACCATCGCTCGCACCAGTGTC
CCAGAGAGCAGCGTAGCAGCAGGCACTGGGTCTCCAAGCAAAACCAGCACTCCAAACACGGTGC
CTATGCTGACACCCAGGCCTTACTCCCAGCCCAAAAACTCTCAAGAGGTTCTGAAGACTTTTAA
GGTCGATGGGAAAGTCAGCATGAATGGAGAAACGGCCCGTGGAGATGTGGAAGGAAAGGAAAAA
GAAGACCCCACAGCGGTGGCCCCTGGCCCTTCCTTAACCAAGTCCCAGATGTTTGAAGGCGTGG
CCACGGTGCATGGCTCTCCCGTGCAAGTGAAACAAGGCAGCAACAGCATCGAGATCAACATCAA
GAAGCCAAATTCTCCTCCCCAGGAACTGACAGCAGCCTCTGAGGAAACTGAGTCAAACGGCCGA
GATGATGAGAACGGTGAAGAGAGCTCAGGGGCACGGGATGTGGAGCTGGATTCGGCAGAGCCAC
AGCATTTTACAACAACCGTGACTCGGTGCAGCCCAACCGTGGCCCTGGTGGAGTTTTCTTCCAG
CCCGCAGCTGAGGAATGAAGTACCAGAAGAACAAGACCAGAAGAAGCCAGAAAACGAGATGAGC
GGGAAGGTGGAGTTAGTACTGTCCCAGAAGGTGGCAAAGCCAAAATCCCCAGAACCGGAAGCAA
CCTTGACATTTCCATTTCTTGACAAAATGCCTGAAACCGACCAACTACATTTGCCAAATCTCAA
TTCTCAAGCGGATTCCCCAAGCAGTGAGAAGTCCCCCGCAAGCACGCCTTTTAAGTTCTGGGCG
TGGGACCCGGAAGAGGAGCGTAGGCGACAGGAGAAGTGGCAGCAGGAGCAAGAGCGCCTGCTCC
AGGAGAGGTATCAGAAGGAGCAGGATAAGCTGAAGGAGGAATGGGAAAAGGCCCAGAAGGAGGT
AGAAGAAGAGGAACGCAGATACTATGAGGAGGAGCGTAAGATAATTGAGGACACCGTGGTTCCA
TTCACTATTTCCTCGAGTTCTGCCGACCAGCTGTCTACATCCTCATCTGTAACTGAAGGCAGCG
GGACAAGGAATAAGATGGACTTGGAAAACTGCCAAGACAGAGACAAAGAGAGAAGACAGAACAC
TCCCCTCCAGGAGAATGACAGTGACTCATCACTCAAAGCTAGAGAAAGTGGCCTGCCCGAGGAG
CACAGCAGCCTAACTCAAAGTCCCTCAGCTAACTCTGAAAACTCCGTGTCAAAAGGAATTAGTC
AGGACCAGCAGCCAGAGACAGAGGCTGAGGCCTCACACTGTGGTACAAACCCACAGTCAGCTCA
GGATCCACCTTGGAATCAACAGATCTCAAACCCACCGACATCCAAGTCGGAAGACGTGAAGCCC
AAAACCCTAGCCCTGGAGAAAAGCATTAATCATCAGATTGAGTCTCCGGGGGAAAGGCGGAAGA
AAAGCCCTCGAGAGAACTTCCGGGCTGGGCCCCTGTCCCCCTGCTCTCCTACCCCTCCTGGCCA
GTCTCCAAACAGGTCTATAAGCGGGAAGAAGCTGTGCTCCTCCTGTGGGCTTGCTTTGGGGAAA
GGCGCCGCAATGATCATCGAGACTCTGAATCTCTACTTTCACATACAGTGTTTCAGGTGCGGCA
TTTGTAAAGGACAGCTAGGAGATGCAGTGAGTGGGACAGATGTCAGGATTCGCAACGGTCTTCT
AAACTGTACCGACTGCTACATGCGATCCAGAAGTGCTGGCCAGCCTACAACACTGTGACGGTTG
GGAGCTTAGCTTCCGGGGCACTGAGCATTTTCTCTGCTGAGAGTGTCCCTTGGCAACTGCTTTA
TTAAACCCAAGTCCAGGGGCTTCTTGGCACTCAGCTAATTTCTGGAAGACTCTCCTACAGTGGT
ATCTGCTCTTTTGTATTGTAGCACAACGTTTGTGCTTCTGGTTGGGGGGGTGGGCGGCTGATTT
CTTTCCCTGCATTTGCACAGTGTATACAAAAGAATAATATGTCGTAACGATCCTGAACACTTAA
CAAATGGTTTTAGCATGGGCAGAGAGGCTTACGGTTGAAAAGGTGTTATTCTCTTGTTTGGGAA
ATAGCAAAAGGGTGCAATAAACCTGTTGTGTTTTAGTATTTCTAGAAATTAAACACGTTATGTT
TACGGAATTGAGCTGCAGGAAGTGCAAGACATGCCAATTTAAGTGAATGCATTTCTAGATGTCC
CAGCGAGTTCTGACTCTGAACTGTAACTTTTTTTTTAATGCAAAGACACTAGTCCTTTAATATA
TACTGTACTCCTGAAAACATTTGAGTTACTTACCTTTGGGGGCAGAAGTCCTTCCAATAAATTA
TCACACTGTTAGTAGTAGATTTTGTGTACCCTAGAAGTCATGTCATTGGTATAGGCTGGTCCCA
TCAAATAAAGAGAC

hide sequence

RefSeq Acc Id:

NM_001401560 ⟹ NP_001388489

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401561 ⟹ NP_001388490

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401562 ⟹ NP_001388491

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401563 ⟹ NP_001388492

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401564 ⟹ NP_001388493

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401565 ⟹ NP_001388494

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401566 ⟹ NP_001388495

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401567 ⟹ NP_001388496

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,551,886 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,198,034 (-)	NCBI

RefSeq Acc Id:

NM_001401568 ⟹ NP_001388497

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,623,240 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,269,390 (-)	NCBI

RefSeq Acc Id:

NM_001401569 ⟹ NP_001388498

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401570 ⟹ NP_001388499

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401572 ⟹ NP_001388501

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401573 ⟹ NP_001388502

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401574 ⟹ NP_001388503

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401575 ⟹ NP_001388504

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401577 ⟹ NP_001388506

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,778,837 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,425,001 (-)	NCBI

RefSeq Acc Id:

NM_001401578 ⟹ NP_001388507

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,551,886 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,198,034 (-)	NCBI

RefSeq Acc Id:

NM_001401579 ⟹ NP_001388508

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,306 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,198,454 (-)	NCBI

RefSeq Acc Id:

NM_001401580 ⟹ NP_001388509

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,551,886 (-)	NCBI
mRatBN7.2	14	41,112,579 - 41,198,034 (-)	NCBI

RefSeq Acc Id:

XM_063273085 ⟹ XP_063129155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273086 ⟹ XP_063129156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273087 ⟹ XP_063129157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273088 ⟹ XP_063129158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273089 ⟹ XP_063129159

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273090 ⟹ XP_063129160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273091 ⟹ XP_063129161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273092 ⟹ XP_063129162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273093 ⟹ XP_063129163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,779,477 (-)	NCBI

RefSeq Acc Id:

XM_063273094 ⟹ XP_063129164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,018 (-)	NCBI

RefSeq Acc Id:

XM_063273095 ⟹ XP_063129165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,018 (-)	NCBI

RefSeq Acc Id:

XM_063273096 ⟹ XP_063129166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,018 (-)	NCBI

RefSeq Acc Id:

XM_063273097 ⟹ XP_063129167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,018 (-)	NCBI

RefSeq Acc Id:

XM_063273098 ⟹ XP_063129168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,018 (-)	NCBI

RefSeq Acc Id:

XM_063273099 ⟹ XP_063129169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,552,018 (-)	NCBI

RefSeq Acc Id:

XM_063273100 ⟹ XP_063129170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,537,853 (-)	NCBI

RefSeq Acc Id:

XM_063273101 ⟹ XP_063129171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,466,433 - 41,537,849 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178607	(Get FASTA)	NCBI Sequence Viewer
	NP_001388489	(Get FASTA)	NCBI Sequence Viewer
	NP_001388490	(Get FASTA)	NCBI Sequence Viewer
	NP_001388491	(Get FASTA)	NCBI Sequence Viewer
	NP_001388492	(Get FASTA)	NCBI Sequence Viewer
	NP_001388493	(Get FASTA)	NCBI Sequence Viewer
	NP_001388494	(Get FASTA)	NCBI Sequence Viewer
	NP_001388495	(Get FASTA)	NCBI Sequence Viewer
	NP_001388496	(Get FASTA)	NCBI Sequence Viewer
	NP_001388497	(Get FASTA)	NCBI Sequence Viewer
	NP_001388498	(Get FASTA)	NCBI Sequence Viewer
	NP_001388499	(Get FASTA)	NCBI Sequence Viewer
	NP_001388501	(Get FASTA)	NCBI Sequence Viewer
	NP_001388502	(Get FASTA)	NCBI Sequence Viewer
	NP_001388503	(Get FASTA)	NCBI Sequence Viewer
	NP_001388504	(Get FASTA)	NCBI Sequence Viewer
	NP_001388506	(Get FASTA)	NCBI Sequence Viewer
	NP_001388507	(Get FASTA)	NCBI Sequence Viewer
	NP_001388508	(Get FASTA)	NCBI Sequence Viewer
	NP_001388509	(Get FASTA)	NCBI Sequence Viewer
	XP_063129155	(Get FASTA)	NCBI Sequence Viewer
	XP_063129156	(Get FASTA)	NCBI Sequence Viewer
	XP_063129157	(Get FASTA)	NCBI Sequence Viewer
	XP_063129158	(Get FASTA)	NCBI Sequence Viewer
	XP_063129159	(Get FASTA)	NCBI Sequence Viewer
	XP_063129160	(Get FASTA)	NCBI Sequence Viewer
	XP_063129161	(Get FASTA)	NCBI Sequence Viewer
	XP_063129162	(Get FASTA)	NCBI Sequence Viewer
	XP_063129163	(Get FASTA)	NCBI Sequence Viewer
	XP_063129164	(Get FASTA)	NCBI Sequence Viewer
	XP_063129165	(Get FASTA)	NCBI Sequence Viewer
	XP_063129166	(Get FASTA)	NCBI Sequence Viewer
	XP_063129167	(Get FASTA)	NCBI Sequence Viewer
	XP_063129168	(Get FASTA)	NCBI Sequence Viewer
	XP_063129169	(Get FASTA)	NCBI Sequence Viewer
	XP_063129170	(Get FASTA)	NCBI Sequence Viewer
	XP_063129171	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063345
	ENSRNOP00000063345.4
	ENSRNOP00000076732
	ENSRNOP00000076732.2
	ENSRNOP00000087540
	ENSRNOP00000087540.2
	ENSRNOP00000093239
	ENSRNOP00000093239.1
	ENSRNOP00000093427
	ENSRNOP00000093427.2
	ENSRNOP00000096454
	ENSRNOP00000096454.2
	ENSRNOP00000097815
	ENSRNOP00000097815.2

RefSeq Acc Id:	NP_001178607 ⟸ NM_001191678
- Peptide Label:	isoform l
- UniProtKB:	A0A8I6ASI2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACPALGLEVLQPLQPEPPPEPAFAEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPG LVKKINRLPTPIAGLDNTILFLRGCKELGLKESQLFDPSDLQDTSNRVTVKNFDYSRKLKNVLV TIYWLGKAANSCTSYSGTTLNLKEFEGLLAQMRKETDDIESPKRSIRDSGYIDCWDSERSDSLS PPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARRTS HGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWSTATSPLGGERPFRYGPRTPVS DDAESTSMFDMRCEEEAAVLPHSRARQEQLQLINNQLREEDDKWQDDLARWKSRRRSASQDLIK KEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKERRERELHEAYKNARSQEEAEGILQQYIE RFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLRQQSLPPPKFTATVETTIARTSV PESSVAAGTGSPSKTSTPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKVSMNGETARGDVEGKEK EDPTAVAPGPSLTKSQMFEGVATVHGSPVQVKQGSNSIEINIKKPNSPPQELTAASEETESNGR DDENGEESSGARDVELDSAEPQHFTTTVTRCSPTVALVEFSSSPQLRNEVPEEQDQKKPENEMS GKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETDQLHLPNLNSQADSPSSEKSPASTPFKFWA WDPEEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVP FTISSSSADQLSTSSSVTEGSGTRNKMDLENCQDRDKERRQNTPLQENDSDSSLKARESGLPEE HSSLTQSPSANSENSVSKGISQDQQPETEAEASHCGTNPQSAQDPPWNQQISNPPTSKSEDVKP KTLALEKSINHQIESPGERRKKSPRENFRAGPLSPCSPTPPGQSPNRSISGKKLCSSCGLALGK GAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCYMRSRSAGQPTTL hide sequence

Ensembl Acc Id:

ENSRNOP00000063345 ⟸ ENSRNOT00000064263

Ensembl Acc Id:

ENSRNOP00000093239 ⟸ ENSRNOT00000114959

Ensembl Acc Id:

ENSRNOP00000096454 ⟸ ENSRNOT00000100682

Ensembl Acc Id:

ENSRNOP00000097815 ⟸ ENSRNOT00000097408

Ensembl Acc Id:

ENSRNOP00000093427 ⟸ ENSRNOT00000103342

Ensembl Acc Id:

ENSRNOP00000076732 ⟸ ENSRNOT00000095221

Ensembl Acc Id:

ENSRNOP00000087540 ⟸ ENSRNOT00000118493

RefSeq Acc Id:	NP_001388506 ⟸ NM_001401577
- Peptide Label:	isoform q
- UniProtKB:	A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388501 ⟸ NM_001401572
- Peptide Label:	isoform m
- UniProtKB:	A0A8I6ASI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388502 ⟸ NM_001401573
- Peptide Label:	isoform n
- UniProtKB:	A0A8I6A611 (UniProtKB/TrEMBL), A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388504 ⟸ NM_001401575
- Peptide Label:	isoform p
- UniProtKB:	A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388503 ⟸ NM_001401574
- Peptide Label:	isoform o
- UniProtKB:	A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388499 ⟸ NM_001401570
- Peptide Label:	isoform k
- UniProtKB:	F1M392 (UniProtKB/TrEMBL), A0A8I6ASI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388498 ⟸ NM_001401569
- Peptide Label:	isoform j
- UniProtKB:	A0A8I6ASI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388495 ⟸ NM_001401566
- Peptide Label:	isoform g
- UniProtKB:	A0A8I6AJT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388493 ⟸ NM_001401564
- Peptide Label:	isoform e

RefSeq Acc Id:	NP_001388492 ⟸ NM_001401563
- Peptide Label:	isoform d

RefSeq Acc Id:	NP_001388490 ⟸ NM_001401561
- Peptide Label:	isoform b

RefSeq Acc Id:	NP_001388494 ⟸ NM_001401565
- Peptide Label:	isoform f

RefSeq Acc Id:	NP_001388491 ⟸ NM_001401562
- Peptide Label:	isoform c

RefSeq Acc Id:	NP_001388489 ⟸ NM_001401560
- Peptide Label:	isoform a

RefSeq Acc Id:	NP_001388497 ⟸ NM_001401568
- Peptide Label:	isoform i

RefSeq Acc Id:	NP_001388508 ⟸ NM_001401579
- Peptide Label:	isoform s

RefSeq Acc Id:	NP_001388507 ⟸ NM_001401578
- Peptide Label:	isoform r
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388496 ⟸ NM_001401567
- Peptide Label:	isoform h

RefSeq Acc Id:	NP_001388509 ⟸ NM_001401580
- Peptide Label:	isoform s

RefSeq Acc Id:	XP_063129163 ⟸ XM_063273093
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129161 ⟸ XM_063273091
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6ASI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129162 ⟸ XM_063273092
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129158 ⟸ XM_063273088
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6ASI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129159 ⟸ XM_063273089
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ASI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129160 ⟸ XM_063273090
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XVC5 (UniProtKB/TrEMBL), A0A8I6GK71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129157 ⟸ XM_063273087
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063129155 ⟸ XM_063273085
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063129156 ⟸ XM_063273086
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063129169 ⟸ XM_063273099
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129168 ⟸ XM_063273098
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129165 ⟸ XM_063273095
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129167 ⟸ XM_063273097
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129166 ⟸ XM_063273096
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129164 ⟸ XM_063273094
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6AWU4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129170 ⟸ XM_063273100
- Peptide Label:	isoform X16
- UniProtKB:	A6JDB0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129171 ⟸ XM_063273101
- Peptide Label:	isoform X17
- UniProtKB:	A6JDB0 (UniProtKB/TrEMBL)

Protein Domains

Calponin-homology (CH) LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M392-F1-model_v2	AlphaFold	F1M392	1-1085	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699306

Promoter ID:

EPDNEW_R9831

Type:

single initiation site

Name:

Limch1_1

Description:

LIM and calponin homology domains 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	43,072,864 - 43,072,924	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305269	AgrOrtholog
BioCyc Gene	G2FUF-15772	BioCyc
Ensembl Genes	ENSRNOG00000002318	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064263	ENTREZGENE
	ENSRNOT00000064263.4	UniProtKB/TrEMBL
	ENSRNOT00000095221	ENTREZGENE
	ENSRNOT00000095221.2	UniProtKB/TrEMBL
	ENSRNOT00000097408	ENTREZGENE
	ENSRNOT00000097408.2	UniProtKB/TrEMBL
	ENSRNOT00000100682	ENTREZGENE
	ENSRNOT00000100682.2	UniProtKB/TrEMBL
	ENSRNOT00000103342	ENTREZGENE
	ENSRNOT00000103342.2	UniProtKB/TrEMBL
	ENSRNOT00000114959	ENTREZGENE
	ENSRNOT00000114959.2	UniProtKB/TrEMBL
	ENSRNOT00000118493	ENTREZGENE
	ENSRNOT00000118493.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	Calponin	UniProtKB/TrEMBL
	Calponin-like_dom_sf	UniProtKB/TrEMBL
	CH-domain	UniProtKB/TrEMBL
	DUF4757	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	305332	ENTREZGENE
PANTHER	LIM DOMAIN ONLY 7	UniProtKB/TrEMBL
	PTHR15551:SF3	UniProtKB/TrEMBL
Pfam	DUF4757	UniProtKB/TrEMBL
	LIM	UniProtKB/TrEMBL
	PF00307	UniProtKB/TrEMBL
PhenoGen	Limch1	PhenoGen
PRINTS	CALPONIN	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
	PS50021	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002318	RatGTEx
SMART	LIM	UniProtKB/TrEMBL
	SM00033	UniProtKB/TrEMBL
Superfamily-SCOP	Calponin-homology	UniProtKB/TrEMBL
UniProt	A0A8I5XVC5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A611	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJT8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ASI2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AWU4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GK71	ENTREZGENE, UniProtKB/TrEMBL
	A6JDB0	ENTREZGENE, UniProtKB/TrEMBL
	F1M392	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Limch1	LIM and calponin homology domains 1	RGD1305269	similar to hypothetical protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305269	similar to hypothetical protein	RGD1305269_predicted	similar to hypothetical protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1305269_predicted	similar to hypothetical protein (predicted)	LOC305332_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305332_predicted	similar to hypothetical protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD