Phf10 (PHD finger protein 10) - Rat Genome Database

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Gene: Phf10 (PHD finger protein 10) Rattus norvegicus
Analyze
Symbol: Phf10
Name: PHD finger protein 10
RGD ID: 1305266
Description: Predicted to enable chromatin binding activity; histone acetyltransferase activity; and transcription coregulator activity. Involved in embryonic brain development. Predicted to be part of npBAF complex. Predicted to be active in chromatin and nucleus. Orthologous to human PHF10 (PHD finger protein 10); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH acetamide; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BAF45a; BRG1-associated factor 45a; LOC292404
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,625,373 - 64,642,110 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl164,624,465 - 64,642,049 (-)EnsemblGRCr8
mRatBN7.2155,952,249 - 55,968,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,952,253 - 55,969,038 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx160,812,693 - 60,829,019 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,469,840 - 69,486,178 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,722,648 - 62,738,974 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0156,951,516 - 56,967,893 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,951,518 - 56,967,895 (-)Ensemblrn6Rnor6.0
Rnor_5.0158,134,862 - 58,191,474 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4153,874,298 - 53,890,546 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,164,139 - 52,178,581 (-)NCBICelera
RGSC_v3.1153,877,244 - 53,893,500 (-)NCBI
Cytogenetic Map1q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
npBAF complex  (IEA,ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Periventricular heterotopia in 6q terminal deletion syndrome: role of the C6orf70 gene. Conti V, etal., Brain. 2013 Nov;136(Pt 11):3378-94. doi: 10.1093/brain/awt249. Epub 2013 Sep 20.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
Additional References at PubMed
PMID:12477932   PMID:17640523  


Genomics

Comparative Map Data
Phf10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,625,373 - 64,642,110 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl164,624,465 - 64,642,049 (-)EnsemblGRCr8
mRatBN7.2155,952,249 - 55,968,994 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,952,253 - 55,969,038 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx160,812,693 - 60,829,019 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0169,469,840 - 69,486,178 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,722,648 - 62,738,974 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0156,951,516 - 56,967,893 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,951,518 - 56,967,895 (-)Ensemblrn6Rnor6.0
Rnor_5.0158,134,862 - 58,191,474 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4153,874,298 - 53,890,546 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,164,139 - 52,178,581 (-)NCBICelera
RGSC_v3.1153,877,244 - 53,893,500 (-)NCBI
Cytogenetic Map1q12NCBI
PHF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,703,902 - 169,724,500 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,703,902 - 169,725,566 (-)Ensemblhg38GRCh38
GRCh376170,103,998 - 170,124,596 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,845,926 - 169,865,909 (-)NCBIBuild 36Build 36hg18NCBI36
Celera6170,814,186 - 170,834,281 (-)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,523,776 - 167,540,978 (-)NCBIHuRef
CHM1_16170,366,215 - 170,386,295 (-)NCBICHM1_1
T2T-CHM13v2.06171,057,816 - 171,078,422 (-)NCBIT2T-CHM13v2.0
Phf10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,165,269 - 15,181,550 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,165,271 - 15,181,535 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381714,944,994 - 14,961,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1714,945,009 - 14,961,273 (-)Ensemblmm10GRCm38
MGSCv371715,081,999 - 15,098,237 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361714,681,585 - 14,697,808 (-)NCBIMGSCv36mm8
MGSCv361714,105,368 - 14,152,496 (-)NCBIMGSCv36mm8
Celera1715,745,693 - 15,760,216 (-)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Phf10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,911,791 - 3,930,912 (+)Ensembl
ChiLan1.0NW_0049554113,911,966 - 3,926,995 (+)NCBIChiLan1.0ChiLan1.0
PHF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25189,954,547 - 189,974,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,837,963 - 187,858,568 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,776,108 - 167,796,711 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,608,779 - 172,831,580 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,608,894 - 172,831,584 (-)EnsemblpanPan2panpan1.1
PHF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,955,354 - 71,998,283 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,787,082 - 71,998,243 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1271,715,498 - 71,738,111 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01272,836,777 - 72,859,418 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,836,777 - 72,880,794 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,188,968 - 72,211,754 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,030,491 - 72,053,136 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,419,516 - 72,442,396 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,906,165 - 150,925,222 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648918,156,705 - 18,173,617 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,158,164 - 18,177,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1556,911 - 576,708 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11555,649 - 576,781 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21933,787 - 954,103 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,512,754 - 97,532,903 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1397,512,867 - 97,532,896 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604069,507,714 - 69,528,037 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248505,633,973 - 5,652,271 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248505,633,967 - 5,652,283 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Phf10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v114974,616 - 991,285 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Phf10
215 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:19
Count of miRNA genes:18
Interacting mature miRNAs:19
Transcripts:ENSRNOT00000020865
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat

Markers in Region
RH130186  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,952,971 - 55,953,129 (+)MAPPERmRatBN7.2
Rnor_6.0156,952,235 - 56,952,392NCBIRnor6.0
Rnor_5.0158,135,581 - 58,135,738UniSTSRnor5.0
RGSC_v3.4153,875,017 - 53,875,174UniSTSRGSC3.4
Celera152,164,858 - 52,165,015UniSTS
RH 3.4 Map1658.8UniSTS
Cytogenetic Map1q12UniSTS
RH132671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,951,797 - 55,952,002 (+)MAPPERmRatBN7.2
Rnor_6.0156,951,061 - 56,951,265NCBIRnor6.0
Rnor_5.0158,134,407 - 58,134,611UniSTSRnor5.0
RGSC_v3.4153,873,843 - 53,874,047UniSTSRGSC3.4
Celera152,163,684 - 52,163,888UniSTS
Cytogenetic Map1q12UniSTS
BF396946  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,961,568 - 55,961,733 (+)MAPPERmRatBN7.2
Rnor_6.0156,960,832 - 56,960,996NCBIRnor6.0
Rnor_5.0158,144,178 - 58,144,342UniSTSRnor5.0
RGSC_v3.4153,883,614 - 53,883,778UniSTSRGSC3.4
Celera152,173,455 - 52,173,619UniSTS
RH 3.4 Map1671.8UniSTS
Cytogenetic Map1q12UniSTS
RH140578  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,994,533 - 55,994,741 (+)MAPPERmRatBN7.2
Rnor_6.0156,993,926 - 56,994,133NCBIRnor6.0
Rnor_5.0158,177,003 - 58,177,210UniSTSRnor5.0
RGSC_v3.4153,917,050 - 53,917,257UniSTSRGSC3.4
RH 3.4 Map1658.6UniSTS
Cytogenetic Map1q12UniSTS
RH142080  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2155,955,141 - 55,955,326 (+)MAPPERmRatBN7.2
Rnor_6.0156,954,405 - 56,954,589NCBIRnor6.0
Rnor_5.0158,137,751 - 58,137,935UniSTSRnor5.0
RGSC_v3.4153,877,187 - 53,877,371UniSTSRGSC3.4
Celera152,167,028 - 52,167,212UniSTS
RH 3.4 Map1675.9UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020889   ⟹   ENSRNOP00000020889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl164,624,465 - 64,642,049 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085273   ⟹   ENSRNOP00000072702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl164,625,373 - 64,641,127 (-)Ensembl
mRatBN7.2 Ensembl155,952,253 - 55,969,038 (-)Ensembl
Rnor_6.0 Ensembl156,951,518 - 56,967,895 (-)Ensembl
RefSeq Acc Id: NM_001024747   ⟹   NP_001019918
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,625,373 - 64,641,758 (-)NCBI
mRatBN7.2155,952,253 - 55,968,590 (-)NCBI
Rnor_6.0156,951,516 - 56,967,893 (-)NCBI
Rnor_5.0158,134,862 - 58,191,474 (-)NCBI
RGSC_v3.4153,874,298 - 53,890,546 (-)RGD
Celera152,164,139 - 52,178,581 (-)RGD
Sequence:
RefSeq Acc Id: XM_017588876   ⟹   XP_017444365
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8164,625,373 - 64,642,110 (-)NCBI
mRatBN7.2155,952,249 - 55,968,994 (-)NCBI
Rnor_6.0156,951,516 - 56,967,785 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001019918 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444365 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98049 (Get FASTA)   NCBI Sequence Viewer  
  EDL99837 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020889
  ENSRNOP00000072702
GenBank Protein Q4V7A6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001019918   ⟸   NM_001024747
- UniProtKB: Q4V7A6 (UniProtKB/Swiss-Prot),   A0A0G2K3M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444365   ⟸   XM_017588876
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K3M7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072702   ⟸   ENSRNOT00000085273
Ensembl Acc Id: ENSRNOP00000020889   ⟸   ENSRNOT00000020889
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V7A6-F1-model_v2 AlphaFold Q4V7A6 1-497 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689639
Promoter ID:EPDNEW_R164
Type:single initiation site
Name:Phf10_1
Description:PHD finger protein 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0156,967,904 - 56,967,964EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305266 AgrOrtholog
BioCyc Gene G2FUF-61326 BioCyc
Ensembl Genes ENSRNOG00000061312 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000020889 ENTREZGENE
  ENSRNOT00000085273 ENTREZGENE
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7457308 IMAGE-MGC_LOAD
InterPro PHF10 UniProtKB/Swiss-Prot
  Znf_FYVE_PHD UniProtKB/Swiss-Prot
  Znf_PHD UniProtKB/Swiss-Prot
  Znf_PHD-finger UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
MGC_CLONE MGC:116207 IMAGE-MGC_LOAD
NCBI Gene 292404 ENTREZGENE
PANTHER HL01030P-RELATED UniProtKB/Swiss-Prot
  PHD FINGER PROTEIN 10 UniProtKB/Swiss-Prot
Pfam PHD UniProtKB/Swiss-Prot
PhenoGen Phf10 PhenoGen
PROSITE ZF_PHD_1 UniProtKB/Swiss-Prot
  ZF_PHD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000061312 RatGTEx
SMART PHD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot
UniProt A0A0G2K3M7 ENTREZGENE, UniProtKB/TrEMBL
  A6KB28_RAT UniProtKB/TrEMBL
  PHF10_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Phf10  PHD finger protein 10  Phf10_predicted  PHD finger protein 10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Phf10_predicted  PHD finger protein 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED