Golga3 (golgin A3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Golga3 (golgin A3) Rattus norvegicus
Analyze
Symbol: Golga3
Name: golgin A3
RGD ID: 1305262
Description: Predicted to be located in Golgi membrane; cytosol; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human GOLGA3 (golgin A3); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: golgi autoantigen, golgin subfamily a, 3; Golgin subfamily A member 3; LOC312077
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Golga3-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,112,129 - 52,160,311 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1252,114,590 - 52,160,226 (-)EnsemblGRCr8
mRatBN7.21246,452,409 - 46,500,509 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl431,081,006 - 31,085,469 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1246,454,870 - 46,500,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1247,630,590 - 47,676,332 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01248,236,020 - 48,281,763 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01247,296,546 - 47,342,289 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,510,509 - 52,558,606 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,512,970 - 52,558,606 (-)Ensemblrn6Rnor6.0
Rnor_5.01254,246,344 - 54,295,058 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41246,601,638 - 46,647,274 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1248,011,114 - 48,056,743 (-)NCBICelera
RGSC_v3.11246,468,084 - 46,514,090 (-)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
emodin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
gentamycin  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
menadione  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methylparaben  (ISO)
microcystin-LR  (EXP)
okadaic acid  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
quercetin  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8315394   PMID:11042173   PMID:12036294   PMID:12477932   PMID:14522980   PMID:19946888   PMID:25468996  


Genomics

Comparative Map Data
Golga3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,112,129 - 52,160,311 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1252,114,590 - 52,160,226 (-)EnsemblGRCr8
mRatBN7.21246,452,409 - 46,500,509 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl431,081,006 - 31,085,469 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1246,454,870 - 46,500,509 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1247,630,590 - 47,676,332 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01248,236,020 - 48,281,763 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01247,296,546 - 47,342,289 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01252,510,509 - 52,558,606 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,512,970 - 52,558,606 (-)Ensemblrn6Rnor6.0
Rnor_5.01254,246,344 - 54,295,058 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41246,601,638 - 46,647,274 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1248,011,114 - 48,056,743 (-)NCBICelera
RGSC_v3.11246,468,084 - 46,514,090 (-)NCBI
Cytogenetic Map12q16NCBI
GOLGA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812132,768,914 - 132,829,081 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12132,768,902 - 132,829,143 (-)Ensemblhg38GRCh38
GRCh3712133,345,500 - 133,405,667 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612131,855,568 - 131,915,361 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412131,955,844 - 132,015,638NCBI
Celera12133,044,786 - 133,104,423 (-)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12130,123,095 - 130,182,218 (-)NCBIHuRef
CHM1_112133,165,472 - 133,225,444 (-)NCBICHM1_1
T2T-CHM13v2.012132,819,976 - 132,879,866 (-)NCBIT2T-CHM13v2.0
Golga3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,324,723 - 110,374,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,324,567 - 110,374,336 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385110,176,857 - 110,226,470 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,176,701 - 110,226,470 (+)Ensemblmm10GRCm38
MGSCv375110,605,720 - 110,652,174 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365110,417,003 - 110,463,457 (+)NCBIMGSCv36mm8
Celera5107,303,546 - 107,345,286 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.36NCBI
Golga3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955482272,255 - 313,499 (+)Ensembl
ChiLan1.0NW_004955482272,430 - 313,499 (+)NCBIChiLan1.0ChiLan1.0
GOLGA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210140,879,242 - 140,948,764 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112140,875,764 - 140,942,423 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012130,134,892 - 130,189,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112134,852,158 - 134,910,777 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12134,852,158 - 134,910,366 (-)EnsemblpanPan2panpan1.1
GOLGA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126333,187 - 376,653 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26338,650 - 373,388 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha26376,263 - 418,642 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.026391,557 - 434,218 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26391,601 - 434,209 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126332,668 - 375,663 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026419,903 - 462,592 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026350,869 - 393,788 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Golga3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118121,999,860 - 122,045,200 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366602,678,775 - 2,721,245 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366602,675,886 - 2,721,232 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,689,571 - 22,738,540 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11422,689,304 - 22,738,544 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,089,583 - 24,133,634 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111128,118,286 - 128,166,137 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11128,114,602 - 128,162,218 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037116,693,306 - 116,748,312 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golga3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474728,140,584 - 28,182,166 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474728,138,910 - 28,182,182 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Golga3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11644,131,496 - 44,179,942 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:218
Count of miRNA genes:140
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000056656
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
RH140717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,455,709 - 46,455,863 (+)MAPPERmRatBN7.2
mRatBN7.2431,080,992 - 31,081,146 (+)MAPPERmRatBN7.2
Rnor_6.0428,220,382 - 28,220,535NCBIRnor6.0
Rnor_6.01252,513,810 - 52,513,963NCBIRnor6.0
Rnor_5.01254,249,645 - 54,249,798UniSTSRnor5.0
Rnor_5.0428,122,678 - 28,122,831UniSTSRnor5.0
RGSC_v3.4427,892,264 - 27,892,417UniSTSRGSC3.4
RGSC_v3.41246,602,478 - 46,602,631UniSTSRGSC3.4
Celera1248,011,954 - 48,012,107UniSTS
Celera426,497,648 - 26,497,801UniSTS
RH 3.4 Map12807.81UniSTS
Cytogenetic Map12q16UniSTS
Cytogenetic Map4q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000056656   ⟹   ENSRNOP00000053494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1252,114,590 - 52,160,226 (-)Ensembl
mRatBN7.2 Ensembl1246,454,870 - 46,500,509 (-)Ensembl
Rnor_6.0 Ensembl1252,512,970 - 52,558,606 (-)Ensembl
RefSeq Acc Id: NM_001107847   ⟹   NP_001101317
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,114,590 - 52,160,226 (-)NCBI
mRatBN7.21246,454,870 - 46,500,509 (-)NCBI
Rnor_6.01252,512,970 - 52,558,606 (-)NCBI
Rnor_5.01254,246,344 - 54,295,058 (-)NCBI
RGSC_v3.41246,601,638 - 46,647,274 (-)RGD
Celera1248,011,114 - 48,056,743 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249563   ⟹   XP_006249625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,112,129 - 52,160,311 (-)NCBI
mRatBN7.21246,452,409 - 46,500,451 (-)NCBI
Rnor_6.01252,510,509 - 52,558,533 (-)NCBI
Rnor_5.01254,246,344 - 54,295,058 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089528   ⟹   XP_038945456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,112,129 - 52,160,159 (-)NCBI
mRatBN7.21246,455,648 - 46,500,451 (-)NCBI
RefSeq Acc Id: XM_039089529   ⟹   XP_038945457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,112,129 - 52,159,812 (-)NCBI
mRatBN7.21246,455,648 - 46,500,040 (-)NCBI
RefSeq Acc Id: XM_063271404   ⟹   XP_063127474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,112,129 - 52,160,311 (-)NCBI
RefSeq Acc Id: XM_063271405   ⟹   XP_063127475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,115,368 - 52,160,311 (-)NCBI
RefSeq Acc Id: XM_063271406   ⟹   XP_063127476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,112,129 - 52,159,894 (-)NCBI
RefSeq Acc Id: XM_063271407   ⟹   XP_063127477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81252,112,129 - 52,149,263 (-)NCBI
RefSeq Acc Id: NP_001101317   ⟸   NM_001107847
- UniProtKB: A6J2C3 (UniProtKB/TrEMBL),   A0A0G2K5A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249625   ⟸   XM_006249563
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000053494   ⟸   ENSRNOT00000056656
RefSeq Acc Id: XP_038945456   ⟸   XM_039089528
- Peptide Label: isoform X1
- UniProtKB: D3ZLD5 (UniProtKB/TrEMBL),   A6J2C4 (UniProtKB/TrEMBL),   A0A0G2K5A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945457   ⟸   XM_039089529
- Peptide Label: isoform X1
- UniProtKB: D3ZLD5 (UniProtKB/TrEMBL),   A6J2C4 (UniProtKB/TrEMBL),   A0A0G2K5A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127474   ⟸   XM_063271404
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K5A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127476   ⟸   XM_063271406
- Peptide Label: isoform X4
- UniProtKB: A6J2C3 (UniProtKB/TrEMBL),   A0A0G2K5A4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127477   ⟸   XM_063271407
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063127475   ⟸   XM_063271405
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K5A4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLD5-F1-model_v2 AlphaFold D3ZLD5 1-1447 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698740
Promoter ID:EPDNEW_R9265
Type:multiple initiation site
Name:Golga3_1
Description:golgin A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9266  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01252,558,311 - 52,558,371EPDNEW
RGD ID:13698741
Promoter ID:EPDNEW_R9266
Type:multiple initiation site
Name:Golga3_2
Description:golgin A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9265  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01252,558,525 - 52,558,585EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305262 AgrOrtholog
BioCyc Gene G2FUF-18800 BioCyc
Ensembl Genes ENSRNOG00000037437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000061046 Ensembl
Ensembl Transcript ENSRNOT00000056656 ENTREZGENE
  ENSRNOT00000056656.4 UniProtKB/TrEMBL
InterPro MT-Golgi_org_protein UniProtKB/TrEMBL
KEGG Report rno:312077 UniProtKB/TrEMBL
NCBI Gene 312077 ENTREZGENE
PANTHER NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED UniProtKB/TrEMBL
  PTHR18902:SF26 UniProtKB/TrEMBL
PhenoGen Golga3 PhenoGen
RatGTEx ENSRNOG00000037437 RatGTEx
  ENSRNOG00000061046 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt A0A0G2K5A4 ENTREZGENE
  A6J2C3 ENTREZGENE, UniProtKB/TrEMBL
  A6J2C4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZLD5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Golga3  golgin A3  Golga3  golgi autoantigen, golgin subfamily a, 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Golga3  golgi autoantigen, golgin subfamily a, 3   Golga3_predicted  golgi autoantigen, golgin subfamily a, 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Golga3_predicted  golgi autoantigen, golgin subfamily a, 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED