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Gene: Reep1 (receptor accessory protein 1) Rattus norvegicus

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Symbol:

Reep1

Name:

receptor accessory protein 1

RGD ID:

1305230

Description:

Predicted to enable microtubule binding activity and olfactory receptor binding activity. Predicted to be involved in endoplasmic reticulum tubular network organization and protein insertion into membrane. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in cytoplasmic microtubule; endoplasmic reticulum membrane; and endoplasmic reticulum tubular network. Human ortholog(s) of this gene implicated in autosomal dominant distal hereditary motor neuronopathy 12; autosomal recessive distal hereditary motor neuronopathy 6; and hereditary spastic paraplegia 31. Orthologous to human REEP1 (receptor accessory protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362384; receptor expression-enhancing protein 1; RGD1305230; similar to hypothetical protein FLJ13110

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	REEP1 (receptor accessory protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Reep1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Reep1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	REEP1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	REEP1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Reep1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	REEP1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	REEP1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Reep1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Reep1 (receptor accessory protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	OTUD4 (OTU deubiquitinase 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	REEP1 (receptor accessory protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Reep1 (receptor accessory protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	reep1 (receptor accessory protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	reep1 (receptor accessory protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T19C3.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T19C3.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ReepA	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ReepA	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	reep1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	105,303,974 - 105,420,611 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	105,303,969 - 105,420,602 (+)	Ensembl				GRCr8
mRatBN7.2	4	103,746,004 - 103,862,347 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,745,633 - 103,862,338 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	109,126,200 - 109,242,259 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	104,901,318 - 105,017,375 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	103,516,012 - 103,632,244 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	99,618,622 - 99,735,329 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,618,622 - 99,735,319 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	164,396,429 - 164,513,470 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	104,982,925 - 105,099,852 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	92,903,130 - 93,018,649 (+)	NCBI		Celera
RGSC_v3.1	4	105,227,462 - 105,342,336 (+)	NCBI
Cytogenetic Map	4	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

autosomal dominant distal hereditary motor neuronopathy 12 (ISO)

autosomal dominant distal hereditary motor neuronopathy 5 (ISO)

autosomal recessive distal hereditary motor neuronopathy 6 (ISO)

Charcot-Marie-Tooth disease (ISO)

genetic disease (ISO)

hereditary spastic paraplegia (ISO)

hereditary spastic paraplegia 10 (ISO)

hereditary spastic paraplegia 31 (ISO,ISS)

Muscle Spasticity (ISO)

paraplegia (ISO)

polyneuropathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

cantharidin (ISO)

carbon nanotube (ISO)

chrysene (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (ISO)

dinophysistoxin 1 (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

glucose (ISO)

hexane (EXP)

isoprenaline (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

menadione (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylseleninic acid (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

potassium chromate (ISO)

pravastatin (EXP,ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

uranium atom (ISO)

valproic acid (ISO)

vitamin E (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum tubular network organization (IBA,ISO)

protein insertion into membrane (ISO)

Cellular Component

cytoplasm (ISO)

cytoplasmic microtubule (IBA)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IBA,ISO)

endoplasmic reticulum tubular network (IBA,ISO)

membrane (IEA,ISO)

plasma membrane (ISO)

Molecular Function

microtubule binding (IBA,ISO)

olfactory receptor binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15550249	PMID:20200447	PMID:24098485	PMID:24668814

Genomics

Comparative Map Data

Reep1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	105,303,974 - 105,420,611 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	105,303,969 - 105,420,602 (+)	Ensembl				GRCr8
mRatBN7.2	4	103,746,004 - 103,862,347 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,745,633 - 103,862,338 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	109,126,200 - 109,242,259 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	104,901,318 - 105,017,375 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	103,516,012 - 103,632,244 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	99,618,622 - 99,735,329 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,618,622 - 99,735,319 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	164,396,429 - 164,513,470 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	104,982,925 - 105,099,852 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	92,903,130 - 93,018,649 (+)	NCBI		Celera
RGSC_v3.1	4	105,227,462 - 105,342,336 (+)	NCBI
Cytogenetic Map	4	q32	NCBI

REEP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	86,213,993 - 86,338,083 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	86,213,993 - 86,338,083 (-)	Ensembl			hg38	GRCh38
GRCh37	2	86,441,116 - 86,565,206 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	86,294,633 - 86,418,288 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	86,352,779 - 86,476,435	NCBI
Celera	2	86,269,251 - 86,393,245 (-)	NCBI		Celera
Cytogenetic Map	2	p11.2	NCBI
HuRef	2	86,338,580 - 86,462,643 (-)	NCBI		HuRef
CHM1_1	2	86,370,561 - 86,495,314 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	86,216,087 - 86,340,099 (-)	NCBI		T2T-CHM13v2.0

Reep1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	71,684,413 - 71,787,694 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	71,684,545 - 71,787,694 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	71,707,429 - 71,810,710 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	71,707,561 - 71,810,710 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	71,657,854 - 71,760,696 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	71,637,369 - 71,740,211 (+)	NCBI		MGSCv36	mm8
Celera	6	73,791,587 - 73,894,394 (+)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	32.2	NCBI

Reep1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	1,369,490 - 1,425,605 (+)	Ensembl
ChiLan1.0	NW_004955424	1,369,490 - 1,425,611 (+)	NCBI	ChiLan1.0	ChiLan1.0

REEP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	40,044,484 - 40,168,054 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	40,047,245 - 40,170,815 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	86,268,147 - 86,391,520 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	87,814,041 - 87,881,687 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	87,814,047 - 87,936,984 (-)	Ensembl			panPan2	panpan1.1

REEP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	38,807,217 - 38,908,434 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	38,807,014 - 38,906,196 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	38,493,572 - 38,594,217 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	39,540,817 - 39,641,510 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	39,540,187 - 39,642,151 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	38,706,876 - 38,807,834 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	38,743,145 - 38,843,963 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	39,129,124 - 39,230,115 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Reep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	79,614,597 - 79,696,048 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936712	1,206,276 - 1,241,301 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936712	1,186,565 - 1,241,829 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

REEP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	58,436,324 - 58,558,934 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	58,436,319 - 58,558,943 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	61,264,880 - 61,327,574 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

REEP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	20,819,318 - 20,924,484 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	20,820,275 - 20,940,683 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	91,546,477 - 91,668,731 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Reep1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	16,933,576 - 17,043,753 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	16,933,575 - 17,042,017 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Reep1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	74,731,697 - 74,846,346 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Reep1
904 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	356
Count of miRNA genes:	223
Interacting mature miRNAs:	274
Transcripts:	ENSRNOT00000064772
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Markers in Region

D4Rat232

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,760,884 - 103,761,084 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	99,633,759 - 99,633,958	NCBI	Rnor6.0
Rnor_5.0	4	164,411,665 - 164,411,864	UniSTS	Rnor5.0
RGSC_v3.4	4	104,998,051 - 104,998,251	RGD	RGSC3.4
RGSC_v3.4	4	104,998,052 - 104,998,251	UniSTS	RGSC3.4
Celera	4	92,917,864 - 92,918,063	UniSTS
RGSC_v3.1	4	105,242,532 - 105,242,732	RGD
SHRSP x BN Map	4	48.75	UniSTS
SHRSP x BN Map	4	48.75	RGD
Cytogenetic Map	4	q33	UniSTS

AI175348

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	103,862,098 - 103,862,266 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	99,735,081 - 99,735,248	NCBI	Rnor6.0
Rnor_5.0	4	164,513,222 - 164,513,389	UniSTS	Rnor5.0
RGSC_v3.4	4	105,099,614 - 105,099,781	UniSTS	RGSC3.4
Celera	4	93,018,411 - 93,018,578	UniSTS
RH 3.4 Map	4	628.44	UniSTS
Cytogenetic Map	4	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	156	91	90	59	51	59	6	305	151	11	135	71	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064772 ⟹ ENSRNOP00000061062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,304,424 - 105,420,602 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,746,142 - 103,862,338 (+)	Ensembl
Rnor_6.0 Ensembl	4	99,618,622 - 99,735,319 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095632 ⟹ ENSRNOP00000087200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,304,424 - 105,420,601 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,746,100 - 103,862,337 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095813 ⟹ ENSRNOP00000085476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,304,451 - 105,420,602 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,776,615 - 103,862,337 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106214 ⟹ ENSRNOP00000082389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,304,424 - 105,420,602 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,746,142 - 103,862,338 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111989 ⟹ ENSRNOP00000090724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,303,969 - 105,420,602 (+)	Ensembl
mRatBN7.2 Ensembl	4	103,745,633 - 103,862,337 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139860 ⟹ ENSRNOP00000104154

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	105,304,424 - 105,411,961 (+)	Ensembl

RefSeq Acc Id:

NM_001108633 ⟹ NP_001102103

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,382 - 105,420,601 (+)	NCBI
mRatBN7.2	4	103,746,100 - 103,862,337 (+)	NCBI
Rnor_6.0	4	99,618,622 - 99,735,319 (+)	NCBI
Rnor_5.0	4	164,396,429 - 164,513,470 (+)	NCBI
RGSC_v3.4	4	104,982,925 - 105,099,852 (+)	RGD
Celera	4	92,903,130 - 93,018,649 (+)	RGD

Sequence:

show sequence

CGCCGACGCGCGAGCGCGGGGCCGGGCCGGGCGGGTGCGCTCAGTCTGGCGGCGGCGGTGCGCG
GACAGACAGACGTGTCGGGAGCGCAGCACCGCCCGCAGCCCAGCAATCCGGGCCGCGCCCGCCA
GCCAGCCCGCCCGCCATGGTGTCGTGGATCATCTCCAGGCTGGTGGTGCTCATATTTGGCACCC
TTTATCCTGCATATTATTCATACAAGGCTGTGAAGTCTAAGGACATTAAAGAATATGTCAAATG
GATGATGTACTGGATCATATTTGCCCTCTTCACCACAGCAGAGACGTTCACAGACATCTTCCTT
TGCTGGTTTCCATTCTATTATGAACTAAAAATAGCATTTGTAGCCTGGCTGCTGTCTCCCTATA
CAAAAGGATCCAGCCTCCTGTACAGGAAGTTTGTTCATCCCACACTGTCCTCAAAAGAAAAGGA
AATCGATGACTGCCTGGTCCAAGCAAAAGATCGAAGTTATGATGCCCTCGTGCACTTTGGGAAG
CGAGGCTTGAATGTGGCGGCCACCGCAGCTGTGATGGCTGCCTCCAAGGGACAGGGTGCCTTGT
CAGAAAGACTACGGAGCTTCAGCATGCAGGACCTCACCACCATCAGGGGCGATGGTGCTCCTGC
TCCCTCAGGCCCCCCTCCACCAGGGTCTGGGAGGTCCAGCGGCAAACACGGCCAGCCCAAGATG
TCCAGGAGTGCTTCTGAGAGTGCCGGCAGCTCAGGCACCGCCTAGAACCCTTCGGTCCCGCTTC
AGGAAGAAAAGTACCTCATCCTCGGCCACTGAAACCACGTGAGATGAGCCAACAGCACCGGATC
CACAGATGTCTCTCCTCTGCCTTAAAGAGCTAGTCACTAGTAACTCGGAAGTCCGCAGGCTGGG
TGTGCTTTGAGTGTGCAGCCCCACAGACACGGCCTTTACTTGCTCCCCCCCCCTTCTGCCTTTA
AGAATTTCTGTTCTCTTTCCTTTTTGTTCCTGCTGGGGAGAGGCTAAAGGGAAAGGTGGTGGAG
GAGGGTGAACTTTATGTCTTCTGGGGTTAGTGATTTTCCACAGTTGGATTGTCTTGTGGCCACA
GTGTTTTTAGATATATAAGCACTCTTTCCATGATGCTGCTGAGATGTACATTTGTAAGTTATTT
GTTGCATAGTTTCTAGTCCTGTAAATGCAAACGAAGTGATCTTTTTTAAAACTCCTTTGGTTGT
TCTTGGTACTAATACATTGGACTATGGTGTACATATTTGCTGCTTTTGGCTTAATGTTATGAAC
TCGCAAGGGCTGCCAGAAGTTCTGGTAAGTGAGAGAGCTGCAAAAACAAAAATGTAGACTAATC
TTTCGATTCTAGGCAACGTCTCCAACCTGCTTACAAAGCCAGTGCCAGTAGGGCATCACTTCTG
CAGGAAGGTGGCCATGTGCTTCCTTCCCATGGCTGTGTGGTTGGTAGGGCAGAGCTGAGGCAGG
AGTGCAGTGTTTCAGCAACAGGGAAGGTTGGTGGGCATCAGGGAGAGGAAGGAACAGAACGGCT
TCTTCAGATCTGGAGGTCTGGGTGTCCTAACAGGTTTGTTGTGCTGTGTACCTAATGGCACCCT
TCCTGCCTTTTGGCTTCTGAGCCCTTCCAGGAGTACTGCTTCAGGCAGGCAGGCAGGCAGGCTC
GCCCTTACTTAGCATGGATGTTTGCAGGATGGAGTCTCAGCTGCTGGCAGAATTGCAAGTATCT
CAGAAGCACTTGGCAAGAGTGTTTCTCCTTCAGGGACCAGTGCTGTGGCTGATTTCTCCAGAAC
GAGCCTGTATCTGAGCACCTTGTTTTAGAGTACACTAAGCAAGAGAAAAGCCTAGAACTAGGTT
TTTGTTACAGATGTGTACAGATGTGCTCAAAAAACATGAGACCCTCAAATCTCAAATGACCACC
AAAAGGCAGGGTCTAGGGGGAACTGAGGCTAAGCCACAGGCAGCTGTGGCTCTTGCTCCCTGCT
GGCTTGTGTGGAAGATGAACGGGATGGACGGACACTCATGTCACTCCATGTCTTCATGGATTTT
ATACAAGCCAGGACTACACTGAGAATTTTGACAAGTCTCTGACTTAGATAACATTGTGTTCTGA
GGGAGCTGCCCTCTTCTCTGATAGCTGAGCCAAACTGTAGGGCTAATCTATGTGCGTAGAGTTG
GTGTTTCCTTTCTGTGTAATGCATGCAGAGGTCACAACCTCTTTGGATTATGTTTGTTCACCGC
TATGCCCTGAAGGCTAGAGAAATCGCGTTGTGTACCACATAGAACTGTCAACTGATTGCAAACA
GGCTCAATGACAAACCGCTCTGGTACTGAGCTATGCAAACATGCATTGAGAGACTGCTACATTA
GCTGGGGCTTGGCCATTTCACAAAGCGTTTCAGTTGGAGTTCATTGCTACCAGATACACCTAGT
GGATTTTCCAAAGATGATTTTGTATTTTAGAACCCACCCTCGGGAACTAACCCAAGAGCTGATG
ACTGAGGACAAATAGTCTGCCTGTGCCCCATACCCATCTGAACCCATTAGGAAAAGCATCTGCC
CTCTTCAAGCTCACCCAACAGCTCCTCACAAGAGAAATGATACCCTCTAAAATGTACAACCATG
TCAGTTAGGTGTATCCAGGATGAATCCAGAGACACAGGTGCAGAAAAGACTGAGAGAAGAAGCT
TTGAACCTCCCCCCCCCGCCCCCCAGAATACTAACTGGCTCTAGGGCCAGAGTTTAAGTCCTAG
TACATTTTCACCGTTTTACAACAGGAAGTCATAACCATCTAGGCTCCAAGGTTGTACTCAGCCA
TGCCAAAACCCAGTCGGAAGCACTCCTCTCAGATATGCTGTATTACTTCTTGCTCAAGATTTAA
AATATAAAGGTATCTAAATTGTCGTCTCATTGTAAGTGTAACTATTTTTCCTTCAAGTGGTGAC
TAAGAAGTTGACTAAGTTTCTTCTCTTAATGACACTCACTGTACAGCCAAACACAGCTGTCTTA
TTTCTTAAGAACTGTGTTTATTTTTCCAACAAGCTGTGTGTTTGTATGTAGACTGACATGATGT
GAATGCCCCTGTACATGTAGAGGTGTGGTGCTCTGTCTACACAAGATAAATGAATGTTTCTAGT
TTGCTGACTTAAGACACGGGCTGTTGACAAATTGCTAGCTTGAAGGTCTACTTGTCTCGGCTTT
GAGTTACAGTCCATGGAGCACATGCCCCATTTCTGAAGAGGTGCGGTTTCACGCTCATCAACTG
GAGATTTAGTCAGAATGCCTCCTGGCTTTGTGTGAATAGCTTGCTCACTTTGCTGGCCTTTGAT
ATATGTATTCTCTGTGGTAAACTGTCCGTGTGTTTGTATTAAGAGTGCTTGTCAATCACAACCA
TCACATAGCCATCCCGGTTCTTCATCTTGCACAGTATTTGAAGTATTACAAGTGGTGGAAGATG
TGCTTCATCCTCCGACAGTGCACGCTGGGAGAGCTGATGTTGCGGATCGTGACTGCGCATTTCC
TCCAGCTTATTTCTGAGGTCTCTCTAGGATGGAAATAATTAATAGTACACTGGACTGCGTGTCT
AAGGGATGTAAAGTGCAGTGTTCCGGAGGCTGAAGCTCTGCTGTTTTGTTATAATGCCTGATAA
ACATCTTGAATAAAGTCTTAACATTTTTCTTT

hide sequence

RefSeq Acc Id:

XM_008762992 ⟹ XP_008761214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,317 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,035 - 103,862,347 (+)	NCBI
Rnor_6.0	4	99,618,637 - 99,735,329 (+)	NCBI

Sequence:

show sequence

GCGGGGCCGGGCCGGGCGGGTGCGCTCAGTCTGGCGGCGGCGGTGCGCGGACAGACAGACGTGT
CGGGAGCGCAGCACCGCCCGCAGCCCAGCAATCCGGGCCGCGCCCGCCAGCCAGCCCGCCCGCC
ATGGTGTCGTGGATCATCTCCAGGCTGGTGGTGCTCATATTTGGCACCCTTTATCCTGCATATT
ATTCATACAAGGCTGTGAAGTCTAAGGACATTAAAGAATATGTCAAATGGATGATGTACTGGAT
CATATTTGCCCTCTTCACCACAGCAGAGACGTTCACAGACATCTTCCTTTGCTGGTTTCCATTC
TATTATGAACTAAAAATAGCATTTGTAGCCTGGCTGCTGTCTCCCTATACAAAAGGATCCAGCC
TCCTGTACAGGAAGTTTGTTCATCCCACACTGTCCTCAAAAGAAAAGGAAATCGATGACTGCCT
GGTCCAAGCAAAAGATCGAAGTTATGATGCCCTCGTGCACTTTGGGAAGCGAGGCTTGAATGTG
GCGGCCACCGCAGCTGTGATGGCTGCCTCCAAGGGACAGGGTGCCTTGTCAGAAAGACTACGGA
GCTTCAGCATGCAGGACCTCACCACCATCAGGGGCGATGGTGCTCCTGCTCCCTCAGGCCCCCC
TCCACCAGGGTCTGGGAGGTCCAGCGGCAAACACGGCCAGCCCAAGATGTCCAGGAGTGCTTCT
GAGAGTGCCGGCAGCTCAGTGTGTACCTGCTGCTCCACCTGCAGGACCCGGAAAGTGGTGGAGG
GAGATGTGAGTGAGGGTGGTGTGAAGTCTTGGGAGCCCCACCAGGTCCAAAACCCACTGGCGTT
TTCTGACGAGGAGGAGGAGGACCTGTTGGAGTTCATATACAAATATAAGGCACCGAGGAGGACC
GAGTTTCCCCTGGAGGCACCGCCTAGAACCCTTCGGTCCCGCTTCAGGAAGAAAAGTACCTCAT
CCTCGGCCACTGAAACCACGTGAGATGAGCCAACAGCACCGGATCCACAGATGTCTCTCCTCTG
CCTTAAAGAGCTAGTCACTAGTAACTCGGAAGTCCGCAGGCTGGGTGTGCTTTGAGTGTGCAGC
CCCACAGACACGGCCTTTACTTGCTCCCCCCCCCTTCTGCCTTTAAGAATTTCTGTTCTCTTTC
CTTTTTGTTCCTGCTGGGGAGAGGCTAAAGGGAAAGGTGGTGGAGGAGGGTGAACTTTATGTCT
TCTGGGGTTAGTGATTTTCCACAGTTGGATTGTCTTGTGGCCACAGTGTTTTTAGATATATAAG
CACTCTTTCCATGATGCTGCTGAGATGTACATTTGTAAGTTATTTGTTGCATAGTTTCTAGTCC
TGTAAATGCAAACGAAGTGATCTTTTTTAAAACTCCTTTGGTTGTTCTTGGTACTAATACATTG
GACTATGGTGTACATATTTGCTGCTTTTGGCTTAATGTTATGAACTCGCAAGGGCTGCCAGAAG
TTCTGGTAAGTGAGAGAGCTGCAAAAACAAAAATGTAGACTAATCTTTCGATTCTAGGCAACGT
CTCCAACCTGCTTACAAAGCCAGTGCCAGTAGGGCATCACTTCTGCAGGAAGGTGGCCATGTGC
TTCCTTCCCATGGCTGTGTGGTTGGTAGGGCAGAGCTGAGGCAGGAGTGCAGTGTTTCAGCAAC
AGGGAAGGTTGGTGGGCATCAGGGAGAGGAAGGAACAGAACGGCTTCTTCAGATCTGGAGGTCT
GGGTGTCCTAACAGGTTTGTTGTGCTGTGTACCTAATGGCACCCTTCCTGCCTTTTGGCTTCTG
AGCCCTTCCAGGAGTACTGCTTCAGGCAGGCAGGCAGGCAGGCTCGCCCTTACTTAGCATGGAT
GTTTGCAGGATGGAGTCTCAGCTGCTGGCAGAATTGCAAGTATCTCAGAAGCACTTGGCAAGAG
TGTTTCTCCTTCAGGGACCAGTGCTGTGGCTGATTTCTCCAGAACGAGCCTGTATCTGAGCACC
TTGTTTTAGAGTACACTAAGCAAGAGAAAAGCCTAGAACTAGGTTTTTGTTACAGATGTGTACA
GATGTGCTCAAAAAACATGAGACCCTCAAATCTCAAATGACCACCAAAAGGCAGGGTCTAGGGG
GAACTGAGGCTAAGCCACAGGCAGCTGTGGCTCTTGCTCCCTGCTGGCTTGTGTGGAAGATGAA
CGGGATGGACGGACACTCATGTCACTCCATGTCTTCATGGATTTTATACAAGCCAGGACTACAC
TGAGAATTTTGACAAGTCTCTGACTTAGATAACATTGTGTTCTGAGGGAGCTGCCCTCTTCTCT
GATAGCTGAGCCAAACTGTAGGGCTAATCTATGTGCGTAGAGTTGGTGTTTCCTTTCTGTGTAA
TGCATGCAGAGGTCACAACCTCTTTGGATTATGTTTGTTCACCGCTATGCCCTGAAGGCTAGAG
AAATCGCGTTGTGTACCACATAGAACTGTCAACTGATTGCAAACAGGCTCAATGACAAACCGCT
CTGGTACTGAGCTATGCAAACATGCATTGAGAGACTGCTACATTAGCTGGGGCTTGGCCATTTC
ACAAAGCGTTTCAGTTGGAGTTCATTGCTACCAGATACACCTAGTGGATTTTCCAAAGATGATT
TTGTATTTTAGAACCCACCCTCGGGAACTAACCCAAGAGCTGATGACTGAGGACAAATAGTCTG
CCTGTGCCCCATACCCATCTGAACCCATTAGGAAAAGCATCTGCCCTCTTCAAGCTCACCCAAC
AGCTCCTCACAAGAGAAATGATACCCTCTAAAATGTACAACCATGTCAGTTAGGTGTATCCAGG
ATGAATCCAGAGACACAGGTGCAGAAAAGACTGAGAGAAGAAGCTTTGAACCTCCCCCCCCCGC
CCCCCAGAATACTAACTGGCTCTAGGGCCAGAGTTTAAGTCCTAGTACATTTTCACCGTTTTAC
AACAGGAAGTCATAACCATCTAGGCTCCAAGGTTGTACTCAGCCATGCCAAAACCCAGTCGGAA
GCACTCCTCTCAGATATGCTGTATTACTTCTTGCTCAAGATTTAAAATATAAAGGTATCTAAAT
TGTCGTCTCATTGTAAGTGTAACTATTTTTCCTTCAAGTGGTGACTAAGAAGTTGACTAAGTTT
CTTCTCTTAATGACACTCACTGTACAGCCAAACACAGCTGTCTTATTTCTTAAGAACTGTGTTT
ATTTTTCCAACAAGCTGTGTGTTTGTATGTAGACTGACATGATGTGAATGCCCCTGTACATGTA
GAGGTGTGGTGCTCTGTCTACACAAGATAAATGAATGTTTCTAGTTTGCTGACTTAAGACACGG
GCTGTTGACAAATTGCTAGCTTGAAGGTCTACTTGTCTCGGCTTTGAGTTACAGTCCATGGAGC
ACATGCCCCATTTCTGAAGAGGTGCGGTTTCACGCTCATCAACTGGAGATTTAGTCAGAATGCC
TCCTGGCTTTGTGTGAATAGCTTGCTCACTTTGCTGGCCTTTGATATATGTATTCTCTGTGGTA
AACTGTCCGTGTGTTTGTATTAAGAGTGCTTGTCAATCACAACCATCACATAGCCATCCCGGTT
CTTCATCTTGCACAGTATTTGAAGTATTACAAGTGGTGGAAGATGTGCTTCATCCTCCGACAGT
GCACGCTGGGAGAGCTGATGTTGCGGATCGTGACTGCGCATTTCCTCCAGCTTATTTCTGAGGT
CTCTCTAGGATGGAAATAATTAATAGTACACTGGACTGCGTGTCTAAGGGATGTAAAGTGCAGT
GTTCCGGAGGCTGAAGCTCTGCTGTTTTGTTATAATGCCTGATAAACATCTTGAATAAAGTCTT
AACATTTTTCTTTTAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039107807 ⟹ XP_038963735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,289 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,006 - 103,862,347 (+)	NCBI

RefSeq Acc Id:

XM_039107809 ⟹ XP_038963737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,309 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,027 - 103,862,347 (+)	NCBI

RefSeq Acc Id:

XM_039107810 ⟹ XP_038963738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,290 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,006 - 103,862,347 (+)	NCBI

RefSeq Acc Id:

XM_039107812 ⟹ XP_038963740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,306 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,023 - 103,862,347 (+)	NCBI

RefSeq Acc Id:

XM_039107813 ⟹ XP_038963741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,332 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,048 - 103,862,347 (+)	NCBI

RefSeq Acc Id:

XM_039107814 ⟹ XP_038963742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,288 - 105,420,611 (+)	NCBI
mRatBN7.2	4	103,746,005 - 103,862,347 (+)	NCBI

RefSeq Acc Id:

XM_063286282 ⟹ XP_063142352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,303,974 - 105,420,611 (+)	NCBI

RefSeq Acc Id:

XR_005503256

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	105,304,289 - 105,415,291 (+)	NCBI
mRatBN7.2	4	103,746,006 - 103,857,012 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102103	(Get FASTA)	NCBI Sequence Viewer
	NP_001416085	(Get FASTA)	NCBI Sequence Viewer
	NP_001416086	(Get FASTA)	NCBI Sequence Viewer
	XP_008761214	(Get FASTA)	NCBI Sequence Viewer
	XP_038963735	(Get FASTA)	NCBI Sequence Viewer
	XP_038963737	(Get FASTA)	NCBI Sequence Viewer
	XP_038963738	(Get FASTA)	NCBI Sequence Viewer
	XP_038963740	(Get FASTA)	NCBI Sequence Viewer
	XP_038963741	(Get FASTA)	NCBI Sequence Viewer
	XP_038963742	(Get FASTA)	NCBI Sequence Viewer
	XP_063142352	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91005	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061062
	ENSRNOP00000061062.2
	ENSRNOP00000082389.2
	ENSRNOP00000085476
	ENSRNOP00000085476.1
	ENSRNOP00000087200
	ENSRNOP00000087200.2
	ENSRNOP00000090724
	ENSRNOP00000090724.1
	ENSRNOP00000104154
	ENSRNOP00000104154.1

RefSeq Acc Id:

NP_001102103 ⟸ NM_001108633

- UniProtKB:

A6IA87 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPF
YYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNV
AATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRSSGKHGQPKMSRSAS
ESAGSSGTA

hide sequence

RefSeq Acc Id:

XP_008761214 ⟸ XM_008762992

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPF
YYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNV
AATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRSSGKHGQPKMSRSAS
ESAGSSVCTCCSTCRTRKVVEGDVSEGGVKSWEPHQVQNPLAFSDEEEEDLLEFIYKYKAPRRT
EFPLEAPPRTLRSRFRKKSTSSSATETT

hide sequence

Ensembl Acc Id:

ENSRNOP00000061062 ⟸ ENSRNOT00000064772

RefSeq Acc Id:	XP_038963742 ⟸ XM_039107814
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038963735 ⟸ XM_039107807
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038963738 ⟸ XM_039107810
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038963740 ⟸ XM_039107812
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038963737 ⟸ XM_039107809
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038963741 ⟸ XM_039107813
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6GDV4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090724 ⟸ ENSRNOT00000111989

Ensembl Acc Id:

ENSRNOP00000087200 ⟸ ENSRNOT00000095632

Ensembl Acc Id:

ENSRNOP00000082389 ⟸ ENSRNOT00000106214

Ensembl Acc Id:

ENSRNOP00000085476 ⟸ ENSRNOT00000095813

RefSeq Acc Id:	XP_063142352 ⟸ XM_063286282
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AD43 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104154 ⟸ ENSRNOT00000139860

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A193-F1-model_v2	AlphaFold	D4A193	1-201	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693116

Promoter ID:

EPDNEW_R3641

Type:

single initiation site

Name:

Reep1_1

Description:

receptor accessory protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	99,618,664 - 99,618,724	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305230	AgrOrtholog
BioCyc Gene	G2FUF-44178	BioCyc
Ensembl Genes	ENSRNOG00000008481	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064772	ENTREZGENE
	ENSRNOT00000064772.3	UniProtKB/TrEMBL
	ENSRNOT00000095632	ENTREZGENE
	ENSRNOT00000095632.2	UniProtKB/TrEMBL
	ENSRNOT00000095813	ENTREZGENE
	ENSRNOT00000095813.2	UniProtKB/TrEMBL
	ENSRNOT00000106214.2	UniProtKB/TrEMBL
	ENSRNOT00000111989	ENTREZGENE
	ENSRNOT00000111989.2	UniProtKB/TrEMBL
	ENSRNOT00000139860	ENTREZGENE
	ENSRNOT00000139860.1	UniProtKB/TrEMBL
InterPro	TB2_DP1_HVA22	UniProtKB/TrEMBL
KEGG Report	rno:362384	UniProtKB/TrEMBL
NCBI Gene	362384	ENTREZGENE
PANTHER	RECEPTOR EXPRESSION-ENHANCING PROTEIN 1	UniProtKB/TrEMBL
	TB2_DP1_HVA22	UniProtKB/TrEMBL
Pfam	TB2_DP1_HVA22	UniProtKB/TrEMBL
PhenoGen	Reep1	PhenoGen
RatGTEx	ENSRNOG00000008481	RatGTEx
UniProt	A0A8I5ZTG4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AD43	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AG42_RAT	UniProtKB/TrEMBL
	A0A8I6GDV4	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L3Z2_RAT	UniProtKB/TrEMBL
	A6IA87	ENTREZGENE, UniProtKB/TrEMBL
	D4A193	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Reep1	receptor accessory protein 1	Reep1_predicted	receptor accessory protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Reep1_predicted	receptor accessory protein 1 (predicted)	RGD1305230_predicted	similar to hypothetical protein FLJ13110 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1305230_predicted	similar to hypothetical protein FLJ13110 (predicted)	LOC362384_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362384_predicted	similar to hypothetical protein FLJ13110 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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