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Gene: Pakap (paralemmin A kinase anchor protein) Rattus norvegicus

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Symbol:

Pakap

Name:

paralemmin A kinase anchor protein

RGD ID:

1305135

Description:

Enables protein domain specific binding activity. Predicted to act upstream of or within actin filament organization; cell surface receptor protein serine/threonine kinase signaling pathway; and intracellular protein localization. Part of protein-containing complex. Orthologous to human PALM2AKAP2 (PALM2 and AKAP2 fusion); PARTICIPATES IN protein kinase A (PKA) signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A kinase (PRKA) anchor protein 2; A-kinase anchor protein 2; A-kinase anchoring protein 2; AKAP-2; Akap2; LOC298024; Palm2; paralemmin 2; paralemmin-2-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PALM2AKAP2 (PALM2 and AKAP2 fusion)	HGNC	Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pakap (paralemmin A kinase anchor protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PALM2AKAP2 (PALM2 and AKAP2 fusion)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PALM2AKAP2 (PALM2 and AKAP2 fusion)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Palm2akap2 (PALM2 and AKAP2 fusion)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PALM2AKAP2 (PALM2-AKAP2 fusion)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PALM2AKAP2 (PALM2 and AKAP2 fusion)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PALM2AKAP2 (PALM2 and AKAP2 fusion)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pakap (paralemmin A kinase anchor protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	palm2 (paralemmin 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	palm2akap2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	76,976,906 - 77,443,656 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	76,977,112 - 77,443,656 (+)	Ensembl				GRCr8
mRatBN7.2	5	72,536,986 - 72,648,524 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2	5	72,313,646 - 72,450,645 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	72,181,718 - 72,648,524 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	74,211,242 - 74,348,839 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHR_Utx	5	74,496,206 - 74,539,933 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	76,317,831 - 76,361,558 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_SHRSP_BbbUtx_1.0	5	76,032,899 - 76,170,486 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	76,005,037 - 76,142,624 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
UTH_Rnor_WKY_Bbb_1.0	5	76,289,961 - 76,333,686 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	74,649,765 - 74,788,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	5	74,874,245 - 74,985,789 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	74,649,765 - 74,788,497 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	5	74,874,306 - 74,982,401 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	78,796,409 - 78,933,153 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	5	78,666,031 - 79,127,060 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	75,814,965 - 75,855,492 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	71,452,762 - 71,496,505 (+)	NCBI		Celera
Celera	5	71,164,073 - 71,300,762 (+)	NCBI		Celera
RGSC_v3.1	5	75,820,077 - 75,860,603 (+)	NCBI
Cytogenetic Map	5	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Weight Gain (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

bucladesine (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

celastrol (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

ciglitazone (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

Cuprizon (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethylparaben (ISO)

fenvalerate (EXP)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glycidyl methacrylate (ISO)

indometacin (ISO)

lead(0) (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

medroxyprogesterone acetate (ISO)

methapyrilene (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

rimonabant (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

Soman (EXP)

tamibarotene (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

triticonazole (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (ISO)

biological_process (ND)

cell surface receptor protein serine/threonine kinase signaling pathway (ISO)

intracellular protein localization (ISO)

regulation of cell shape (IEA)

Cellular Component

apical plasma membrane (IEA)

membrane (IEA)

plasma membrane (IEA,ISO)

protein-containing complex (IDA)

side of membrane (IEA)

Molecular Function

protein binding (ISO)

protein domain specific binding (IPI)

protein kinase A binding (ISO)

protein-containing complex binding (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

protein kinase A (PKA) signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	A-kinase anchoring proteins: from protein complexes to physiology and disease.	Carnegie GK, etal., IUBMB Life. 2009 Apr;61(4):394-406.
2.	A dynamic mechanism for AKAP binding to RII isoforms of cAMP-dependent protein kinase.	Kinderman FS, etal., Mol Cell. 2006 Nov 3;24(3):397-408.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	Localized effects of cAMP mediated by distinct routes of protein kinase A.	Tasken K and Aandahl EM, Physiol Rev. 2004 Jan;84(1):137-67.

Additional References at PubMed

PMID:9497389	PMID:12477932	PMID:21873635	PMID:35352799

Genomics

Comparative Map Data

Pakap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	76,976,906 - 77,443,656 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	76,977,112 - 77,443,656 (+)	Ensembl				GRCr8
mRatBN7.2	5	72,536,986 - 72,648,524 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2	5	72,313,646 - 72,450,645 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	72,181,718 - 72,648,524 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	74,211,242 - 74,348,839 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHR_Utx	5	74,496,206 - 74,539,933 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	76,317,831 - 76,361,558 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_SHRSP_BbbUtx_1.0	5	76,032,899 - 76,170,486 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	76,005,037 - 76,142,624 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
UTH_Rnor_WKY_Bbb_1.0	5	76,289,961 - 76,333,686 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	74,649,765 - 74,788,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	5	74,874,245 - 74,985,789 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	74,649,765 - 74,788,497 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	5	74,874,306 - 74,982,401 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	78,796,409 - 78,933,153 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	5	78,666,031 - 79,127,060 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	75,814,965 - 75,855,492 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	71,452,762 - 71,496,505 (+)	NCBI		Celera
Celera	5	71,164,073 - 71,300,762 (+)	NCBI		Celera
RGSC_v3.1	5	75,820,077 - 75,860,603 (+)	NCBI
Cytogenetic Map	5	q24	NCBI

PALM2AKAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	109,640,787 - 110,172,512 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	109,498,325 - 110,172,512 (+)	Ensembl			hg38	GRCh38
GRCh37	9	112,403,067 - 112,934,792 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	111,582,398 - 111,974,613 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	109,622,273 - 109,785,306	NCBI
Celera	9	83,044,274 - 83,436,417 (+)	NCBI		Celera
Cytogenetic Map	9	q31.3	NCBI
HuRef	9	82,144,738 - 82,536,888 (+)	NCBI		HuRef
CHM1_1	9	112,689,212 - 113,081,245 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	121,810,203 - 122,342,040 (+)	NCBI		T2T-CHM13v2.0

Pakap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	57,434,475 - 57,896,984 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	57,434,247 - 57,712,016 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	4	57,717,657 - 57,896,984 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	4	57,568,179 - 57,896,982 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	57,434,475 - 57,896,984 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	57,568,179 - 57,896,982 (+)	Ensembl			mm10	GRCm38
GRCm38.p6 Ensembl	4	57,717,657 - 57,896,984 (+)	Ensembl			mm10	GRCm38
GRCm38.p6 Ensembl	4	57,434,247 - 57,712,016 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	57,581,154 - 57,730,017 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	57,662,302 - 57,805,856 (+)	NCBI		MGSCv36	mm8
Celera	4	57,480,009 - 57,628,214 (+)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	31.66	NCBI

PALM2AKAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	29,237,589 - 29,766,553 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	29,236,065 - 29,769,190 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	80,794,036 - 81,328,270 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	109,104,006 - 109,494,631 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	109,413,921 - 109,494,631 (+)	Ensembl			panPan2	panpan1.1

PALM2AKAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	64,841,405 - 65,178,204 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	64,842,167 - 65,175,262 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	63,241,589 - 63,578,592 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	65,975,096 - 66,305,415 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	65,834,080 - 66,304,619 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	64,495,896 - 64,825,223 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	64,515,888 - 64,846,733 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	65,206,125 - 65,537,222 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Palm2akap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	179,948,400 - 180,406,419 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936559	3,055,832 - 3,194,853 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936559	2,860,147 - 2,997,627 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936559	2,860,595 - 3,194,846 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PALM2AKAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	250,680,942 - 251,190,244 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	250,984,658 - 251,190,244 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa11.1	1	250,824,055 - 250,968,545 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	281,712,174 - 281,730,889 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	1	281,586,884 - 281,587,188 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PALM2AKAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	29,371,705 - 29,908,100 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	29,371,209 - 29,604,909 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666035	12,809,675 - 13,393,649 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Pakap
2882 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	156
Count of miRNA genes:	116
Interacting mature miRNAs:	135
Transcripts:	ENSRNOT00000015576
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
1357396	Bw44	Body weight QTL 44	4.19		body mass (VT:0001259)	body weight (CMO:0000012)	5	73779642	118779642	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
61380	Edpm5	Estrogen-dependent pituitary mass QTL 5	4.5	0.92	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	5	73779642	103472210	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
2302381	Bw84	Body weight QTL 84	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1357402	Bw46	Body weight QTL 46	4.47		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	5	73779642	118779642	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
7394708	Emca11	Estrogen-induced mammary cancer QTL 11			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	73176602	118176602	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	69474415	114474415	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
2290005	Mcs24	Mammary carcinoma susceptibility QTL 24			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	69835120	114835120	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2312671	Scl64	Serum cholesterol level QTL 64		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	73779642	118779642	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Markers in Region

RH141890

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	72,644,899 - 72,645,093 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	74,982,165 - 74,982,358	NCBI	Rnor6.0
Rnor_5.0	5	79,123,437 - 79,123,630	UniSTS	Rnor5.0
RGSC_v3.4	5	75,855,258 - 75,855,451	UniSTS	RGSC3.4
Celera	5	71,492,887 - 71,493,080	UniSTS
RH 3.4 Map	5	494.7	UniSTS
Cytogenetic Map	5	q24	UniSTS

RH137540

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	72,637,014 - 72,637,158 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	74,974,282 - 74,974,425	NCBI	Rnor6.0
Rnor_5.0	5	79,115,517 - 79,115,660	UniSTS	Rnor5.0
RGSC_v3.4	5	75,847,373 - 75,847,516	UniSTS	RGSC3.4
Celera	5	71,484,984 - 71,485,127	UniSTS
Cytogenetic Map	5	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
20	13	85	198	91	90	59	103	59	6	430	231	22	176	112	124	31	31	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001305995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001309260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001425400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015576 ⟹ ENSRNOP00000015576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	72,593,613 - 72,623,047 (+)	Ensembl
Rnor_6.0 Ensembl	5	74,941,802 - 74,982,401 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000030913 ⟹ ENSRNOP00000030796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	72,380,680 - 72,449,473 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076918 ⟹ ENSRNOP00000067989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	74,874,306 - 74,954,873 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097436 ⟹ ENSRNOP00000087137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	76,977,112 - 77,443,656 (+)	Ensembl
mRatBN7.2 Ensembl	5	72,604,829 - 72,648,524 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097969 ⟹ ENSRNOP00000087434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	72,313,560 - 72,648,522 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098662 ⟹ ENSRNOP00000089455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	77,108,793 - 77,443,656 (+)	Ensembl
mRatBN7.2 Ensembl	5	72,313,560 - 72,648,524 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106097 ⟹ ENSRNOP00000077701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	77,108,149 - 77,440,536 (+)	Ensembl
mRatBN7.2 Ensembl	5	72,181,718 - 72,646,031 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114485 ⟹ ENSRNOP00000090369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	77,388,813 - 77,441,488 (+)	Ensembl
mRatBN7.2 Ensembl	5	72,312,916 - 72,646,031 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117085 ⟹ ENSRNOP00000092250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	76,977,112 - 77,439,763 (+)	Ensembl
mRatBN7.2 Ensembl	5	72,574,582 - 72,648,522 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117632 ⟹ ENSRNOP00000078673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	77,108,230 - 77,443,656 (+)	Ensembl
mRatBN7.2 Ensembl	5	72,313,560 - 72,648,522 (+)	Ensembl

RefSeq Acc Id:

NM_001011974 ⟹ NP_001011974

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,399,956 - 77,443,656 (+)	NCBI
mRatBN7.2	5	72,604,829 - 72,648,524 (+)	NCBI
Rnor_6.0	5	74,942,091 - 74,985,789 (+)	NCBI
Rnor_5.0	5	78,666,031 - 79,127,060 (+)	NCBI
RGSC_v3.4	5	75,814,965 - 75,855,492 (+)	RGD
Celera	5	71,452,762 - 71,496,505 (+)	NCBI

Sequence:

show sequence

CGAACGCTGGAATCTGTCTGGAGAAAGAGGCGATTCTGACTGCGGACTCCGAGGTGCGCGCACT
GGGCTTTTTCTCTGGGCAGGAAAAGCCCCCAGCTTTCTGACGATGCTAACCAGCTGAGAAACAA
GCAAGACAACTGTGGTGACAGTCGCCTGGAGCCTGCCGCCAGCTCTCTCTCCCCAGATCACAAA
AACATGGAAATTGGGGTGTCCGTGGCAGAATGTAAAAGTGTACCTGGAATCACCTCTACCCCCC
ATTCCAAGGACCACTCCTCCCCTTTCTATTCTCCCTCACACAATGGCCTCCTCACTGATCACCA
CGAGTCTTTAGATAATGATGTCGCCAGAGAGATCCAATACCTAGATGAGGTGCTGGAGGCCAAC
TGCTGCGATTCCTCCGTGGATGGAACTTACAACGGGATCTCTTCCCCAGAGCCTGGTGCAGCCA
TACTGGTAAGCAGCCTTGGCTCACCTGCCCACTCAGCCACCAAGGTAGAACCCATTGAGAAAGC
ATCTGGTAGGCAGCTGCCTCCTCACATCGAACTCAGTAGAAGCCCTTCTGACAGCATGGCTGAA
GGAGAAAGAGCCAATGGACACTCCACTGACCAGCCTCAAGACATGCTGGGGAATAGCCTGCAGG
CTCCTGCCAGCCCCAGTTCCTCTACCAGCTCCCACTGCTCCTCCCGAGATGGAGAGTTCACACT
CACCACACTGAAGAAGGAGGCCAAGTTTGAGCTGCGTGCCTTCCACGAGGACAAGAAGCCCTCC
AAGCTCTTTGAGGAGGACGAGCACGAGAAGGAGCAGTTCTGCATCCGGAAAGTGAGGCCCTCTG
AGGAGATGATAGAGCTGGAGAAGGAGCGGAGGGAACTCATTCGGAGTCAGGCTGTGAAGAAGAA
TCCTGGCATCGCGGCCAAGTGGTGGAATCCTCCCCAGGAAAAAACTATTGAGGAACAGCTGGAT
GAGGAACATCTGGAGTCACACAGAAAGTACAAGGAGCGCAAAGAGAAAAGGGCACAGCAGGAAC
AGCTACAGTTACAGCAACAGCAGCAGCAGCAGCTACAACAGTTGCAACAGTTGCAGCAGCAGCA
ACAGCAGCAGCTGTCCACCTCTCAGCTCTGCACAGCCCCAGCTGCTCATGAACACCTAGATAGC
ATTGAACACACAAAGGAGGATGTCGTCACTGAGCAGATTGATTTCTCAGCTGCACGCAAGCAGT
TCCAGCAGATGGAGAATTCCAGGCAAACACTGGCCAAGGGCCAGAGCACACCTAGGCTGTTCTC
CATCAAGCCTTTCTACAAACCTCTTGGATCCATCAACTCGGACAAGCCACCGACCATCTTGCGA
CCAGCTACTATCGGGGGAACTGTGGAAGACAGCAGCACACAGGCAGCCAAAGAGCAGAAAGCTC
TCTGTGTATCTGAGAGCCAGTCTGCAGGAGCAGGAACAGGTAATGCTGCCACTCAGGGAAAGGA
AGGGCCATACAGTGAGCCTTCCAAACGCGGGCCCTTATCCAAACTGTGGGCAGAGGATGGAGAG
TTCACAAGTGCCCGGGCCGTCCTTACTGTAGTCAAAGATGAAGATCATGGGATTTTGGACCAGT
TTTCAAGATCGGTCAATGTATCTTTGACCCAGGAGGAGCTGGACTCAGGTTTGGATGAGTTGTC
AGTAAGGTCCCAGGACACCACTGTCCTGGAGACTTTGTCCAATGACTTCAGCATGGACAACATA
AGTGACAGTGGAGCTTCTAATGAGACACCCAATGCCCTTCAGGAAAACTCTCTGGCTGATTTCT
CCCTGCCTCAGACTCCCCAAACAGACAACCCCTCAGAGGGCCGAGAAGGCGTCTCCAAGTCCTT
CAGTGACCATGGTTTCTATTCTCCTTCCTCCACACTGGGAGATTCCCCATCCGTTGATGACCCC
TTGGAATATCAGGCTGGGCTCCTGGTGCAGAATGCCATTCAACAAGCCATAGCCGAGCAGGTGG
ATAAGGCTGAGGTGCACACCAGCAAAGAGGGATCAGAACAGCAGGAACCTGGAGCAATGGTAGA
GGAAGCTGGAAGCCAGGCTCCTGGCTCTGAGAAGCCCCAGGGCATGTTTGCACCACCTCAGGTG
TCCTCTCCCGTTCAAGAGAAAAGGGATGTATTACCAAAGATCCTCCCCGGGGAGGACAAGACAC
TCAGGGAAAAGGGACCCTCCCAGCCACCCACAGCTGTGCAGCCCAGCGGTCCAGTCAACATGAA
AGAGACCAGGCCTGAAGGAGGGTACTTCAGCAAATACTCAGAGGCAGCCGAGCTGAGAAGCACA
GCCTCCCTTCTGGCTACTCAAGAGTCTGATGTCATGGTTGGGCCCTTCAAACTGAGGTCAAGGA
AGCAGCGGACTTTGTCCATGATTGAAGAAGAGATCCGGGCAGCCCAGGAAAGGGAAGAGGAGCT
AAAGCGGCAAAGACAAGTGAGGCAAAGCACCCCAAGCCCCAGGGCTCAGAACGCCCCATCGCTG
CCTTCCAGAACCACCTGCTACAAAACTGCTCCAGGGAAAATAGAGAAAGTCAAACCTCCTCCAT
CCCCCACAACTGAAGGTCCCAGCTTGCAGCCTGACTTAGCCCCTGAAGAGGCTGCCGGAGCCCA
GCGGCCCAAGAACCTGATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGGCGC
GAGAGAATGGATGATAGTAGTGTCCTGGAGGCCACTCGGGTTAATCGAAGGAAGAGTGCTCTGG
CCTTGCGCTGGGAGGCAGGGATTTATGCCAACCAGGAGGAGGAGGACAATGAATAAACTTCCTT
CAGCCCAGGAAACTCCTTGGCCAAAGAGTTTCCGCAAAGAAACCAAGAAATTATTGAATCAGAC
GCATTTTAATAGACTACTTATTAAAGTGCATACAAACTCAATAACCCTCATGTAGACCAGAAGC
TGCAATACACAATGATAATAAAACAAAACGAAACACAAAAAAGCAAAGCGAAGCGAACAGGAAG
TTCACCCATCAAACTCTGAGACGGGGCAGAGGAGAAAGGGTGTCTTTGTGACTCAAAGAAAGCC
TTGGCTTTGGACCATTCCACAACTGATCCAAAGGGACACAGACGGGACAAGCAAGTCCACGTAG
TTGCTGCAGGCAGAACTGAAGCCAGCCTCGGCTGGGCGTTACGGAGGAGCAAACAGGCCATTCC
AAGGCAACCAACAGGCCCCAGCCTGGTGCAGCCTACAGCACACAGGCTACCCCTCCACCAGCTT
CCCACCCCTTTCTCCGTCAAGGCATCAGAAGTGTTGGGTTGACTCCATTTTCTCCAGCAGCCAT
AAAAACAAATGGTGTTCCTTTCCATAGTTGCCCCAAAAGGAGGCAACAAGGATTCGATCTCTCT
TATATGTAATCATTTGAAATTGGGAGCACCTAATGGTCACAATATATATAAAGTCTGTATTTTT
AAGGCAATATCTCTTCACGTTGCAGACGCAATCTATCCTACAGCAGGAGGTTGAGGACGGTGGG
GGAGAGAGCCAAACCAAAAGGGTTATTAGCTTTAGGACCTTGTCTGCTTTTATCGTTGACTGAT
CAGTTTAGGGAAACACACTTTCACGGTTACGTTTCTTCATATGAAAAGTATATTTAGTGAGCAA
TGACTATTTTTATGATGGGATGGGGGAACAGGGACACGGGATAAAACCTGTACACATTTGAACG
GCTTGGTTCAAGATGGTAGGGGTATTTTTAGAATGGCAATAATTGAAAATAAAAGGGGGCAGAC
TCTGCCTTCAGGAAGGTAGATGACCAGAAATAAGGTGTTTGTAACTATTTTCTATTTTAAAGTG
GGCCTTAGAGGTGGCTGTGGCATAGGATGAGCTGTTTTGGATCTGAGAAAGGCAACCTTAAACG
CATGGAGATAGGAAGAGAAAGGGGCGAGAGAGACAAAGAATGGGAAAGGAAGGAAGGAAGGGAG
ATTATTTTTGCTGAACAACCAGTGTTTTCCAGGACGACAGAGAGAAAAATATAGCATAGAAATT
TAAGTACACATGTGGAATCAGCTACAAATCCTAAAGATGGTGTGTATGCCTTTGTGTGCTTGTA
TAAGGCATGTATGTTGGTGAGTAAATATATGCCAGCGTGGGGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGGTGTGTTGACCGTGACACATGGGTGTACAGTATTTCCTCTGTAGCTGCCTGT
CGACTTCAGGAGTGAGTGACAGTTTTCTTTTTTTATGAAAAGGCACAGGGAAGACACAGGGCTG
ATGCAGTATTCCTGATGTCAAGCTGACTGAACTATGGCATTTGCATGAGTGACAGTCGTGAAGT
TTCCAGCAGTTTTGTATTGATAATTTGACATTTAGTACACACCCTATTTATTCTCATGCTTTCT
GTCCGTGCCTCGTGTACCACAGAGGACACCGGCTTCATTCTTTCTGTCATTTCAAGCAATATGA
TAAGGACGTTCACTAATCGGGTGCCCTGAGTTTCTGAATGAGAAAATGTTTCATTTCTGGCCAG
GAAGGGGAGGTGGGAGGAGGGGGAGAAGGCATGGAAGGGGAAGGAGGAAGAAAAAGAAGAACTA
ACCAGCCTTCATTATTTTTCCTTTATTTTTAAGCTATTTCTTACAAGCAATAATTAAATCATAC
CTTGCTAAAATTCATTTTTGTTTTTATGTTATTATGTTATAAGATCTAATATGTTATTCTAATG
AGTAGCGACTCCACAATACTTATATGCACACTCCACACACTATCTTGGCTTTTTTGTTTTGTTT
TGTTTTGTTTTCTTTAAATTAGGCTAGTGTGACTTTAGGGAAAAGCTTACTCACTAGTAAGTAG
TGGGCACAGGTAAAAAGATGGAGTTGTCTCATGGCTTATAGGGATGCTTAAAAACTACCAAGGG
AACGTGTAACTCCAAGACAGATTCTGCAGTCGCTAGCCAAAATCGTACGCCGGAAGTGCGCGCC
GTCTTTAGATGGTTCATTCTTTTAGACATAATGTTATTAAAAATGCTAGCCACTGAGGACAGAA
AGCAAAGGCAGAGAACTGTGCTGCAAGGAATTTGCTCTTCAGTAAGGGAGGTGGGCCCAGAAGC
AAATGTTCCGGAACAGAACGTGACATCCATGCCAGATTAGAAGTCCTGCTAGGTAGATGGGCAC
ACGGGAGAAGGGCCATTTTTGTCGAAGGACTTCCCGCCGGAGGCTGTTTACACGGTGAGATGAA
GGCTCCTTCCTTAGGGACACACAGGAATCAGGACTCGTGGGGGGCGGGGAGGAGAGGGGTAGCT
GCAGTGTCCTGGGACCTCCGCCCCACTCTGGAGAGCAGGGTAGTACTGTGAGTGCTACAGAAAG
CAAGCTCCTTCATGATTTCTGGTATGTGCTAGCGACTGTGGAAGCATCACAGACCAACTCGCCC
ATTTTTCACAAAGGGAAACCGTCCCCTTGGCTTCCTTAAATTTCTTGTCCTGTTTAGAAGGGAA
ATGTGGACCCTCGTGGAGGGTACACTGAGGAAAGACTTGGCAGCCAGAGCCCACGCACTCCTTG
GAGTTCCTTCGGTAGCAGATGAAGTGGTCTTTTGACTGCAGTAGATTGGATAGGAAGTTCGAAC
GCTGAGGGATTAGGCTTGTCTGTAGGTGAGGAGACACAAGTCTCTTCCTGCTTACAGGGCTTTT
ATCACTGGCCTCTCCATTTCCAAGTTTTGCTGGTTTCCCTGAGCTGCCTCTAAAGACTGCCATC
TGTTTCCTTGCTCCCCTCGATGACAGTTCTAGTGTATTTTGTTAGGATAGAAACCGCATCTCCA
TCAGAGAGAGGTATTTTTTGTTCTGTGTTCTTTGGGGTATTTTTTTTTATTTGGGGTGGGTGGG
GTGATTTATTCGTTTTCTCATTCAGGAAACATTTGAGCCATTGCTTTGGACATATCACTGTGCT
AGGCTCTAGGATCCCACGTGGGCCCCTGTCACCTTCCCAGTATGGAGCAGATCCCTGGAGGAAA
AGTCTTTTCTGCCCCATAAGCCTGAGATGAAGAGGCTCCTGGTTACTTTTGCCTCGGATGCTCG
GCTCTACCCTGCACCAGTACACAAGCTTGTTAGTCTCAGCTGTAAGAAATGTTTAGCTTCTGTA
GATGTTAAAAACCTTCCTGAAGGAATTCCACACTGCAGTGTTTATACTCGCACTTCCCTCCAGA
GCCTATGACTTGACAGCCTTGGCTTTCTCATCTAGAAATGAGGGATGCAGGGTCTGTCATCTGT
GGCAGAGGCTGGGCGGCACTTGGATGACATAGTGCATGTCCCTTCCTCTTACCCATGCATGCTG
CCCACCCTAGGCAATGGCATAGAAGCAGTATATAGATCAGTGTCCACACACACACACACACATA
CACACACACACACACACACAAACAAGGAACACCAAAACAGTGTTGATTGTTGTGTTTAAAGACA
TGTTTTTTTTTCACCTGAAGAATGGACTTAAACTATGTATTGAAAAAAAAATAGCCTAAGTGTT
AGAAATGGTGAATGTATCCAGTTTCAGTTACAAAAACGATTTCCTGAATTTTAAGCATTCAGTG
AGCTGCCAATTTTGATTTTGTGTTGCTCTTTATCCAAATGGCTTTTTCTTTTCTTCTTTCTTCT
TTTTATAAATTGGAGGAAGTGGGGGTGGGGCGGGGAGCAGCAATATTGTGTTTGACAAATTATA
CTCTGTACCTGGCTTTCCTGTGTTCTGTTAACCACCGAGATGTTTCTATTCCGTTTTGGTTTTA
TAGTGTCTGTGAGGCACTCGATGCAACCATACAGTTATTTTCTCATTAAAACTCAGCGTGTGCA
GTGTT

hide sequence

RefSeq Acc Id:

NM_001305995 ⟹ NP_001292924

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,108,793 - 77,245,786 (+)	NCBI
mRatBN7.2	5	72,313,646 - 72,450,645 (+)	NCBI

RefSeq Acc Id:

NM_001309260 ⟹ NP_001296189

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,399,956 - 77,443,656 (+)	NCBI
mRatBN7.2	5	72,604,829 - 72,648,524 (+)	NCBI
Rnor_6.0	5	74,942,091 - 74,985,789 (+)	NCBI
Celera	5	71,452,762 - 71,496,505 (+)	NCBI

Sequence:

show sequence

CGAACGCTGGAATCTGTCTGGAGAAAGAGGCGATTCTGACTGCGGACTCCGAGGTGCGCGCACT
GGGCTTTTTCTCTGGGCAGGAAAAGCCCCCAGCTTTCTGACGATGCTAACCAGCTGAGAAACAA
GCAAGACAACTGTGGTGACAGTCGCCTGGAGCCTGCCGCCAGCTCTCTCTCCCCAGATCACAAA
AACATGGAAATTGGGGTGTCCGTGGCAGAATGTAAAAGTGTACCTGGAATCACCTCTACCCCCC
ATTCCAAGGACCACTCCTCCCCTTTCTATTCTCCCTCACACAATGGCCTCCTCACTGATCACCA
CGAGTCTTTAGATAATGATGTCGCCAGAGAGATCCAATACCTAGATGAGGTGCTGGAGGCCAAC
TGCTGCGATTCCTCCGTGGATGGAACTTACAACGGGATCTCTTCCCCAGAGCCTGGTGCAGCCA
TACTGGTAAGCAGCCTTGGCTCACCTGCCCACTCAGCCACCAAGGTAGAACCCATTGAGAAAGC
ATCTGGTAGGCAGCTGCCTCCTCACATCGAACTCAGTAGAAGCCCTTCTGACAGCATGGCTGAA
GGAGAAAGAGCCAATGGACACTCCACTGACCAGCCTCAAGACATGCTGGGGAATAGCCTGCAGG
CTCCTGCCAGCCCCAGTTCCTCTACCAGCTCCCACTGCTCCTCCCGAGATGGAGAGTTCACACT
CACCACACTGAAGAAGGAGGCCAAGTTTGAGCTGCGTGCCTTCCACGAGGACAAGAAGCCCTCC
AAGCTCTTTGAGGAGGACGAGCACGAGAAGGAGCAGTTCTGCATCCGGAAAGTGAGGCCCTCTG
AGGAGATGATAGAGCTGGAGAAGGAGCGGAGGGAACTCATTCGGAGTCAGGCTGTGAAGAAGAA
TCCTGGCATCGCGGCCAAGTGGTGGAATCCTCCCCAGGAAAAAACTATTGAGGAACAGCTGGAT
GAGGAACATCTGGAGTCACACAGAAAGTACAAGGAGCGCAAAGAGAAAAGGGCACAGCAGGAAC
AGCTACAGTTACAGCAACAGCAGCAGCAGCAGCTACAACAGTTGCAACAGTTGCAGCAGCAGCA
ACAGCAGCAGCTGTCCACCTCTCAGCTCTGCACAGCCCCAGCTGCTCATGAACACCTAGATAGC
ATTGAACACACAAAGGAGGATGTCGTCACTGAGCAGATTGATTTCTCAGCTGCACGCAAGCAGT
TCCAGCAGATGGAGAATTCCAGGCAAACACTGGCCAAGGGCCAGAGCACACCTAGGCTGTTCTC
CATCAAGCCTTTCTACAAACCTCTTGGATCCATCAACTCGGACAAGCCACCGACCATCTTGCGA
CCAGCTACTATCGGGGGAACTGTGGAAGACAGCAGCACACAGGCAGCCAAAGAGCAGAAAGCTC
TCTGTGTATCTGAGAGCCAGTCTGCAGGAGCAGGAACAGGTAATGCTGCCACTCAGGGAAAGGA
AGGGCCATACAGTGAGCCTTCCAAACGCGGGCCCTTATCCAAACTGTGGGCAGAGGATGGAGAG
TTCACAAGTGCCCGGGCCGTCCTTACTGTAGTCAAAGATGAAGATCATGGGATTTTGGACCAGT
TTTCAAGATCGGTCAATGTATCTTTGACCCAGGAGGAGCTGGACTCAGGTTTGGATGAGTTGTC
AGTAAGGTCCCAGGACACCACTGTCCTGGAGACTTTGTCCAATGACTTCAGCATGGACAACATA
AGTGACAGTGGAGCTTCTAATGAGACACCCAATGCCCTTCAGGAAAACTCTCTGGCTGATTTCT
CCCTGCCTCAGACTCCCCAAACAGACAACCCCTCAGAGGGCCGAGAAGGCGTCTCCAAGTCCTT
CAGTGACCATGGTTTCTATTCTCCTTCCTCCACACTGGGAGATTCCCCATCCGTTGATGACCCC
TTGGAATATCAGGCTGGGCTCCTGGTGCAGAATGCCATTCAACAAGCCATAGCCGAGCAGGTGG
ATAAGGCTGAGGTGCACACCAGCAAAGAGGGATCAGAACAGCAGGAACCTGGAGCAATGGTAGA
GGAAGCTGGAAGCCAGGCTCCTGGCTCTGAGAAGCCCCAGGGCATGTTTGCACCACCTCAGGTG
TCCTCTCCCGTTCAAGAGAAAAGGGATGTATTACCAAAGATCCTCCCCGGGGAGGACAAGACAC
TCAGGGAAAAGGGACCCTCCCAGCCACCCACAGCTGTGCAGCCCAGCGGTCCAGTCAACATGAA
AGAGACCAGGCCTGAAGGAGGGTACTTCAGCAAATACTCAGAGGCAGCCGAGCTGAGAAGCACA
GCCTCCCTTCTGGCTACTCAAGAGTCTGATGTCATGGTTGGGCCCTTCAAACTGAGGTCAAGGA
AGCAGCGGACTTTGTCCATGATTGAAGAAGAGATCCGGGCAGCCCAGGAAAGGGAAGAGGAGCT
AAAGCGGCAAAGACAAGTGAGGCAAAGCACCCCAAGCCCCAGGGCTCAGAACGCCCCATCGCTG
CCTTCCAGAACCACCTGCTACAAAACTGCTCCAGGGAAAATAGAGAAAGTCAAACCTCCTCCAT
CCCCCACAACTGAAGGTCCCAGCTTGCAGCCTGACTTAGCCCCTGAAGAGGCTGCCGGAGCCCA
GCGGCCCAAGAACCTGATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGGCGC
GAGAGAATGGATGATAGTAGTTACACCTCTAAGTTACTGTCTTGCAAGGTGACTTCCGAGGTCC
TGGAGGCCACTCGGGTTAATCGAAGGAAGAGTGCTCTGGCCTTGCGCTGGGAGGCAGGGATTTA
TGCCAACCAGGAGGAGGAGGACAATGAATAAACTTCCTTCAGCCCAGGAAACTCCTTGGCCAAA
GAGTTTCCGCAAAGAAACCAAGAAATTATTGAATCAGACGCATTTTAATAGACTACTTATTAAA
GTGCATACAAACTCAATAACCCTCATGTAGACCAGAAGCTGCAATACACAATGATAATAAAACA
AAACGAAACACAAAAAAGCAAAGCGAAGCGAACAGGAAGTTCACCCATCAAACTCTGAGACGGG
GCAGAGGAGAAAGGGTGTCTTTGTGACTCAAAGAAAGCCTTGGCTTTGGACCATTCCACAACTG
ATCCAAAGGGACACAGACGGGACAAGCAAGTCCACGTAGTTGCTGCAGGCAGAACTGAAGCCAG
CCTCGGCTGGGCGTTACGGAGGAGCAAACAGGCCATTCCAAGGCAACCAACAGGCCCCAGCCTG
GTGCAGCCTACAGCACACAGGCTACCCCTCCACCAGCTTCCCACCCCTTTCTCCGTCAAGGCAT
CAGAAGTGTTGGGTTGACTCCATTTTCTCCAGCAGCCATAAAAACAAATGGTGTTCCTTTCCAT
AGTTGCCCCAAAAGGAGGCAACAAGGATTCGATCTCTCTTATATGTAATCATTTGAAATTGGGA
GCACCTAATGGTCACAATATATATAAAGTCTGTATTTTTAAGGCAATATCTCTTCACGTTGCAG
ACGCAATCTATCCTACAGCAGGAGGTTGAGGACGGTGGGGGAGAGAGCCAAACCAAAAGGGTTA
TTAGCTTTAGGACCTTGTCTGCTTTTATCGTTGACTGATCAGTTTAGGGAAACACACTTTCACG
GTTACGTTTCTTCATATGAAAAGTATATTTAGTGAGCAATGACTATTTTTATGATGGGATGGGG
GAACAGGGACACGGGATAAAACCTGTACACATTTGAACGGCTTGGTTCAAGATGGTAGGGGTAT
TTTTAGAATGGCAATAATTGAAAATAAAAGGGGGCAGACTCTGCCTTCAGGAAGGTAGATGACC
AGAAATAAGGTGTTTGTAACTATTTTCTATTTTAAAGTGGGCCTTAGAGGTGGCTGTGGCATAG
GATGAGCTGTTTTGGATCTGAGAAAGGCAACCTTAAACGCATGGAGATAGGAAGAGAAAGGGGC
GAGAGAGACAAAGAATGGGAAAGGAAGGAAGGAAGGGAGATTATTTTTGCTGAACAACCAGTGT
TTTCCAGGACGACAGAGAGAAAAATATAGCATAGAAATTTAAGTACACATGTGGAATCAGCTAC
AAATCCTAAAGATGGTGTGTATGCCTTTGTGTGCTTGTATAAGGCATGTATGTTGGTGAGTAAA
TATATGCCAGCGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTTGACCGT
GACACATGGGTGTACAGTATTTCCTCTGTAGCTGCCTGTCGACTTCAGGAGTGAGTGACAGTTT
TCTTTTTTTATGAAAAGGCACAGGGAAGACACAGGGCTGATGCAGTATTCCTGATGTCAAGCTG
ACTGAACTATGGCATTTGCATGAGTGACAGTCGTGAAGTTTCCAGCAGTTTTGTATTGATAATT
TGACATTTAGTACACACCCTATTTATTCTCATGCTTTCTGTCCGTGCCTCGTGTACCACAGAGG
ACACCGGCTTCATTCTTTCTGTCATTTCAAGCAATATGATAAGGACGTTCACTAATCGGGTGCC
CTGAGTTTCTGAATGAGAAAATGTTTCATTTCTGGCCAGGAAGGGGAGGTGGGAGGAGGGGGAG
AAGGCATGGAAGGGGAAGGAGGAAGAAAAAGAAGAACTAACCAGCCTTCATTATTTTTCCTTTA
TTTTTAAGCTATTTCTTACAAGCAATAATTAAATCATACCTTGCTAAAATTCATTTTTGTTTTT
ATGTTATTATGTTATAAGATCTAATATGTTATTCTAATGAGTAGCGACTCCACAATACTTATAT
GCACACTCCACACACTATCTTGGCTTTTTTGTTTTGTTTTGTTTTGTTTTCTTTAAATTAGGCT
AGTGTGACTTTAGGGAAAAGCTTACTCACTAGTAAGTAGTGGGCACAGGTAAAAAGATGGAGTT
GTCTCATGGCTTATAGGGATGCTTAAAAACTACCAAGGGAACGTGTAACTCCAAGACAGATTCT
GCAGTCGCTAGCCAAAATCGTACGCCGGAAGTGCGCGCCGTCTTTAGATGGTTCATTCTTTTAG
ACATAATGTTATTAAAAATGCTAGCCACTGAGGACAGAAAGCAAAGGCAGAGAACTGTGCTGCA
AGGAATTTGCTCTTCAGTAAGGGAGGTGGGCCCAGAAGCAAATGTTCCGGAACAGAACGTGACA
TCCATGCCAGATTAGAAGTCCTGCTAGGTAGATGGGCACACGGGAGAAGGGCCATTTTTGTCGA
AGGACTTCCCGCCGGAGGCTGTTTACACGGTGAGATGAAGGCTCCTTCCTTAGGGACACACAGG
AATCAGGACTCGTGGGGGGCGGGGAGGAGAGGGGTAGCTGCAGTGTCCTGGGACCTCCGCCCCA
CTCTGGAGAGCAGGGTAGTACTGTGAGTGCTACAGAAAGCAAGCTCCTTCATGATTTCTGGTAT
GTGCTAGCGACTGTGGAAGCATCACAGACCAACTCGCCCATTTTTCACAAAGGGAAACCGTCCC
CTTGGCTTCCTTAAATTTCTTGTCCTGTTTAGAAGGGAAATGTGGACCCTCGTGGAGGGTACAC
TGAGGAAAGACTTGGCAGCCAGAGCCCACGCACTCCTTGGAGTTCCTTCGGTAGCAGATGAAGT
GGTCTTTTGACTGCAGTAGATTGGATAGGAAGTTCGAACGCTGAGGGATTAGGCTTGTCTGTAG
GTGAGGAGACACAAGTCTCTTCCTGCTTACAGGGCTTTTATCACTGGCCTCTCCATTTCCAAGT
TTTGCTGGTTTCCCTGAGCTGCCTCTAAAGACTGCCATCTGTTTCCTTGCTCCCCTCGATGACA
GTTCTAGTGTATTTTGTTAGGATAGAAACCGCATCTCCATCAGAGAGAGGTATTTTTTGTTCTG
TGTTCTTTGGGGTATTTTTTTTTATTTGGGGTGGGTGGGGTGATTTATTCGTTTTCTCATTCAG
GAAACATTTGAGCCATTGCTTTGGACATATCACTGTGCTAGGCTCTAGGATCCCACGTGGGCCC
CTGTCACCTTCCCAGTATGGAGCAGATCCCTGGAGGAAAAGTCTTTTCTGCCCCATAAGCCTGA
GATGAAGAGGCTCCTGGTTACTTTTGCCTCGGATGCTCGGCTCTACCCTGCACCAGTACACAAG
CTTGTTAGTCTCAGCTGTAAGAAATGTTTAGCTTCTGTAGATGTTAAAAACCTTCCTGAAGGAA
TTCCACACTGCAGTGTTTATACTCGCACTTCCCTCCAGAGCCTATGACTTGACAGCCTTGGCTT
TCTCATCTAGAAATGAGGGATGCAGGGTCTGTCATCTGTGGCAGAGGCTGGGCGGCACTTGGAT
GACATAGTGCATGTCCCTTCCTCTTACCCATGCATGCTGCCCACCCTAGGCAATGGCATAGAAG
CAGTATATAGATCAGTGTCCACACACACACACACACATACACACACACACACACACACAAACAA
GGAACACCAAAACAGTGTTGATTGTTGTGTTTAAAGACATGTTTTTTTTTCACCTGAAGAATGG
ACTTAAACTATGTATTGAAAAAAAAATAGCCTAAGTGTTAGAAATGGTGAATGTATCCAGTTTC
AGTTACAAAAACGATTTCCTGAATTTTAAGCATTCAGTGAGCTGCCAATTTTGATTTTGTGTTG
CTCTTTATCCAAATGGCTTTTTCTTTTCTTCTTTCTTCTTTTTATAAATTGGAGGAAGTGGGGG
TGGGGCGGGGAGCAGCAATATTGTGTTTGACAAATTATACTCTGTACCTGGCTTTCCTGTGTTC
TGTTAACCACCGAGATGTTTCTATTCCGTTTTGGTTTTATAGTGTCTGTGAGGCACTCGATGCA
ACCATACAGTTATTTTCTCATTAAAACTCAGCGTGTGCAGTGTT

hide sequence

RefSeq Acc Id:

NM_001425400 ⟹ NP_001412329

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,108,793 - 77,443,656 (+)	NCBI

RefSeq Acc Id:

XM_006238185 ⟹ XP_006238247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,399,884 - 77,443,638 (+)	NCBI
mRatBN7.2	5	72,604,746 - 72,648,524 (+)	NCBI
Rnor_6.0	5	74,941,558 - 74,985,789 (+)	NCBI
Rnor_5.0	5	78,666,031 - 79,127,060 (+)	NCBI

Sequence:

show sequence

GTATTGGGTCCTATGGAGTCTGTAGTGTTTAGCTTGGTGTGGTAGGTGGCACATATCTTTAACT
TCAACCTGAGGGAGGAGAGGCAGGGGGATCTCGTTGATTAGAGGCCACTTTCTTCTATACAGCG
AGTTCCATGGAGGCCAGCCAGGACTCCCCAGTGAGATCTTGTGTAAAAGAATAAAAAGGGCGTC
ACTTGTCTAGAATCCTTCAGATTTTTACAGACTCGGTAGCCAGCGTCAGCCCATATCTGAGTTT
CAAAGAAGCACCAGTAACAGGTCACGTCAGCACCTTCGGGCTTTTGCTCTTCCCCTGCTTAGCA
CCGGAGCCTGACCAAGGCCACTAGCATTGCCTCTGGCAGGAAAGCAGCTGCCCTCCCATCCTGG
GCCGACTGGGGAGGGGCCAGGCTTCTCTGAAGGGGACGAAAGTCCTTCTTGGTGTGAATGGCCT
TTTAGGGAACAGAGGGAGGGCCCGCGGTGACATCACAGTCTCCAGTCCCGAGGCTCCTAAGGAA
TTTGTCCCGGCTGAGCCAGTGCGAACGCTGGAATCTGTCTGGAGAAAGAGGCGATTCTGACTGC
GGACTCCGAGAAAAGCCCCCAGCTTTCTGACGATGCTAACCAGCTGAGAAACAAGCAAGACAAC
TGTGGTGACAGTCGCCTGGAGCCTGCCGCCAGCTCTCTCTCCCCAGATCACAAAAACATGGAAA
TTGGGGTGTCCGTGGCAGAATGTAAAAGTGTACCTGGAATCACCTCTACCCCCCATTCCAAGGA
CCACTCCTCCCCTTTCTATTCTCCCTCACACAATGGCCTCCTCACTGATCACCACGAGTCTTTA
GATAATGATGTCGCCAGAGAGATCCAATACCTAGATGAGGTGCTGGAGGCCAACTGCTGCGATT
CCTCCGTGGATGGAACTTACAACGGGATCTCTTCCCCAGAGCCTGGTGCAGCCATACTGGTAAG
CAGCCTTGGCTCACCTGCCCACTCAGCCACCAAGGTAGAACCCATTGAGAAAGCATCTGGTAGG
CAGCTGCCTCCTCACATCGAACTCAGTAGAAGCCCTTCTGACAGCATGGCTGAAGGAGAAAGAG
CCAATGGACACTCCACTGACCAGCCTCAAGACATGCTGGGGAATAGCCTGCAGGCTCCTGCCAG
CCCCAGTTCCTCTACCAGCTCCCACTGCTCCTCCCGAGATGGAGAGTTCACACTCACCACACTG
AAGAAGGAGGCCAAGTTTGAGCTGCGTGCCTTCCACGAGGACAAGAAGCCCTCCAAGCTCTTTG
AGGAGGACGAGCACGAGAAGGAGCAGTTCTGCATCCGGAAAGTGAGGCCCTCTGAGGAGATGAT
AGAGCTGGAGAAGGAGCGGAGGGAACTCATTCGGAGTCAGGCTGTGAAGAAGAATCCTGGCATC
GCGGCCAAGTGGTGGAATCCTCCCCAGGAAAAAACTATTGAGGAACAGCTGGATGAGGAACATC
TGGAGTCACACAGAAAGTACAAGGAGCGCAAAGAGAAAAGGGCACAGCAGGAACAGCTACAGTT
ACAGCAACAGCAGCAGCAGCAGCTACAACAGTTGCAACAGTTGCAGCAGCAGCAACAGCAGCAG
CTGTCCACCTCTCAGCTCTGCACAGCCCCAGCTGCTCATGAACACCTAGATAGCATTGAACACA
CAAAGGAGGATGTCGTCACTGAGCAGATTGATTTCTCAGCTGCACGCAAGCAGTTCCAGCAGAT
GGAGAATTCCAGGCAAACACTGGCCAAGGGCCAGAGCACACCTAGGCTGTTCTCCATCAAGCCT
TTCTACAAACCTCTTGGATCCATCAACTCGGACAAGCCACCGACCATCTTGCGACCAGCTACTA
TCGGGGGAACTGTGGAAGACAGCAGCACACAGGCAGCCAAAGAGCAGAAAGCTCTCTGTGTATC
TGAGAGCCAGTCTGCAGGAGCAGGAACAGGTAATGCTGCCACTCAGGGAAAGGAAGGGCCATAC
AGTGAGCCTTCCAAACGCGGGCCCTTATCCAAACTGTGGGCAGAGGATGGAGAGTTCACAAGTG
CCCGGGCCGTCCTTACTGTAGTCAAAGATGAAGATCATGGGATTTTGGACCAGTTTTCAAGATC
GGTCAATGTATCTTTGACCCAGGAGGAGCTGGACTCAGGTTTGGATGAGTTGTCAGTAAGGTCC
CAGGACACCACTGTCCTGGAGACTTTGTCCAATGACTTCAGCATGGACAACATAAGTGACAGTG
GAGCTTCTAATGAGACACCCAATGCCCTTCAGGAAAACTCTCTGGCTGATTTCTCCCTGCCTCA
GACTCCCCAAACAGACAACCCCTCAGAGGGCCGAGAAGGCGTCTCCAAGTCCTTCAGTGACCAT
GGTTTCTATTCTCCTTCCTCCACACTGGGAGATTCCCCATCCGTTGATGACCCCTTGGAATATC
AGGCTGGGCTCCTGGTGCAGAATGCCATTCAACAAGCCATAGCCGAGCAGGTGGATAAGGCTGA
GGTGCACACCAGCAAAGAGGGATCAGAACAGCAGGAACCTGGAGCAATGGTAGAGGAAGCTGGA
AGCCAGGCTCCTGGCTCTGAGAAGCCCCAGGGCATGTTTGCACCACCTCAGGTGTCCTCTCCCG
TTCAAGAGAAAAGGGATGTATTACCAAAGATCCTCCCCGGGGAGGACAAGACACTCAGGGAAAA
GGGACCCTCCCAGCCACCCACAGCTGTGCAGCCCAGCGGTCCAGTCAACATGAAAGAGACCAGG
CCTGAAGGAGGGTACTTCAGCAAATACTCAGAGGCAGCCGAGCTGAGAAGCACAGCCTCCCTTC
TGGCTACTCAAGAGTCTGATGTCATGGTTGGGCCCTTCAAACTGAGGTCAAGGAAGCAGCGGAC
TTTGTCCATGATTGAAGAAGAGATCCGGGCAGCCCAGGAAAGGGAAGAGGAGCTAAAGCGGCAA
AGACAAGTGAGGCAAAGCACCCCAAGCCCCAGGGCTCAGAACGCCCCATCGCTGCCTTCCAGAA
CCACCTGCTACAAAACTGCTCCAGGGAAAATAGAGAAAGTCAAACCTCCTCCATCCCCCACAAC
TGAAGGTCCCAGCTTGCAGCCTGACTTAGCCCCTGAAGAGGCTGCCGGAGCCCAGCGGCCCAAG
AACCTGATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGGCGCGAGAGAATGG
ATGATAGTAGTTACACCTCTAAGTTACTGTCTTGCAAGGTGACTTCCGAGGTCCTGGAGGCCAC
TCGGGTTAATCGAAGGAAGAGTGCTCTGGCCTTGCGCTGGGAGGCAGGGATTTATGCCAACCAG
GAGGAGGAGGACAATGAATAAACTTCCTTCAGCCCAGGAAACTCCTTGGCCAAAGAGTTTCCGC
AAAGAAACCAAGAAATTATTGAATCAGACGCATTTTAATAGACTACTTATTAAAGTGCATACAA
ACTCAATAACCCTCATGTAGACCAGAAGCTGCAATACACAATGATAATAAAACAAAACGAAACA
CAAAAAAGCAAAGCGAAGCGAACAGGAAGTTCACCCATCAAACTCTGAGACGGGGCAGAGGAGA
AAGGGTGTCTTTGTGACTCAAAGAAAGCCTTGGCTTTGGACCATTCCACAACTGATCCAAAGGG
ACACAGACGGGACAAGCAAGTCCACGTAGTTGCTGCAGGCAGAACTGAAGCCAGCCTCGGCTGG
GCGTTACGGAGGAGCAAACAGGCCATTCCAAGGCAACCAACAGGCCCCAGCCTGGTGCAGCCTA
CAGCACACAGGCTACCCCTCCACCAGCTTCCCACCCCTTTCTCCGTCAAGGCATCAGAAGTGTT
GGGTTGACTCCATTTTCTCCAGCAGCCATAAAAACAAATGGTGTTCCTTTCCATAGTTGCCCCA
AAAGGAGGCAACAAGGATTCGATCTCTCTTATATGTAATCATTTGAAATTGGGAGCACCTAATG
GTCACAATATATATAAAGTCTGTATTTTTAAGGCAATATCTCTTCACGTTGCAGACGCAATCTA
TCCTACAGCAGGAGGTTGAGGACGGTGGGGGAGAGAGCCAAACCAAAAGGGTTATTAGCTTTAG
GACCTTGTCTGCTTTTATCGTTGACTGATCAGTTTAGGGAAACACACTTTCACGGTTACGTTTC
TTCATATGAAAAGTATATTTAGTGAGCAATGACTATTTTTATGATGGGATGGGGGAACAGGGAC
ACGGGATAAAACCTGTACACATTTGAACGGCTTGGTTCAAGATGGTAGGGGTATTTTTAGAATG
GCAATAATTGAAAATAAAAGGGGGCAGACTCTGCCTTCAGGAAGGTAGATGACCAGAAATAAGG
TGTTTGTAACTATTTTCTATTTTAAAGTGGGCCTTAGAGGTGGCTGTGGCATAGGATGAGCTGT
TTTGGATCTGAGAAAGGCAACCTTAAACGCATGGAGATAGGAAGAGAAAGGGGCGAGAGAGACA
AAGAATGGGAAAGGAAGGAAGGAAGGGAGATTATTTTTGCTGAACAACCAGTGTTTTCCAGGAC
GACAGAGAGAAAAATATAGCATAGAAATTTAAGTACACATGTGGAATCAGCTACAAATCCTAAA
GATGGTGTGTATGCCTTTGTGTGCTTGTATAAGGCATGTATGTTGGTGAGTAAATATATGCCAG
CGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTTGACCGTGACACATGGG
TGTACAGTATTTCCTCTGTAGCTGCCTGTCGACTTCAGGAGTGAGTGACAGTTTTCTTTTTTTA
TGAAAAGGCACAGGGAAGACACAGGGCTGATGCAGTATTCCTGATGTCAAGCTGACTGAACTAT
GGCATTTGCATGAGTGACAGTCGTGAAGTTTCCAGCAGTTTTGTATTGATAATTTGACATTTAG
TACACACCCTATTTATTCTCATGCTTTCTGTCCGTGCCTCGTGTACCACAGAGGACACCGGCTT
CATTCTTTCTGTCATTTCAAGCAATATGATAAGGACGTTCACTAATCGGGTGCCCTGAGTTTCT
GAATGAGAAAATGTTTCATTTCTGGCCAGGAAGGGGAGGTGGGAGGAGGGGGAGAAGGCATGGA
AGGGGAAGGAGGAAGAAAAAGAAGAACTAACCAGCCTTCATTATTTTTCCTTTATTTTTAAGCT
ATTTCTTACAAGCAATAATTAAATCATACCTTGCTAAAATTCATTTTTGTTTTTATGTTATTAT
GTTATAAGATCTAATATGTTATTCTAATGAGTAGCGACTCCACAATACTTATATGCACACTCCA
CACACTATCTTGGCTTTTTTGTTTTGTTTTGTTTTGTTTTCTTTAAATTAGGCTAGTGTGACTT
TAGGGAAAAGCTTACTCACTAGTAAGTAGTGGGCACAGGTAAAAAGATGGAGTTGTCTCATGGC
TTATAGGGATGCTTAAAAACTACCAAGGGAACGTGTAACTCCAAGACAGATTCTGCAGTCGCTA
GCCAAAATCGTACGCCGGAAGTGCGCGCCGTCTTTAGATGGTTCATTCTTTTAGACATAATGTT
ATTAAAAATGCTAGCCACTGAGGACAGAAAGCAAAGGCAGAGAACTGTGCTGCAAGGAATTTGC
TCTTCAGTAAGGGAGGTGGGCCCAGAAGCAAATGTTCCGGAACAGAACGTGACATCCATGCCAG
ATTAGAAGTCCTGCTAGGTAGATGGGCACACGGGAGAAGGGCCATTTTTGTCGAAGGACTTCCC
GCCGGAGGCTGTTTACACGGTGAGATGAAGGCTCCTTCCTTAGGGACACACAGGAATCAGGACT
CGTGGGGGGCGGGGAGGAGAGGGGTAGCTGCAGTGTCCTGGGACCTCCGCCCCACTCTGGAGAG
CAGGGTAGTACTGTGAGTGCTACAGAAAGCAAGCTCCTTCATGATTTCTGGTATGTGCTAGCGA
CTGTGGAAGCATCACAGACCAACTCGCCCATTTTTCACAAAGGGAAACCGTCCCCTTGGCTTCC
TTAAATTTCTTGTCCTGTTTAGAAGGGAAATGTGGACCCTCGTGGAGGGTACACTGAGGAAAGA
CTTGGCAGCCAGAGCCCACGCACTCCTTGGAGTTCCTTCGGTAGCAGATGAAGTGGTCTTTTGA
CTGCAGTAGATTGGATAGGAAGTTCGAACGCTGAGGGATTAGGCTTGTCTGTAGGTGAGGAGAC
ACAAGTCTCTTCCTGCTTACAGGGCTTTTATCACTGGCCTCTCCATTTCCAAGTTTTGCTGGTT
TCCCTGAGCTGCCTCTAAAGACTGCCATCTGTTTCCTTGCTCCCCTCGATGACAGTTCTAGTGT
ATTTTGTTAGGATAGAAACCGCATCTCCATCAGAGAGAGGTATTTTTTGTTCTGTGTTCTTTGG
GGTATTTTTTTTTATTTGGGGTGGGTGGGGTGATTTATTCGTTTTCTCATTCAGGAAACATTTG
AGCCATTGCTTTGGACATATCACTGTGCTAGGCTCTAGGATCCCACGTGGGCCCCTGTCACCTT
CCCAGTATGGAGCAGATCCCTGGAGGAAAAGTCTTTTCTGCCCCATAAGCCTGAGATGAAGAGG
CTCCTGGTTACTTTTGCCTCGGATGCTCGGCTCTACCCTGCACCAGTACACAAGCTTGTTAGTC
TCAGCTGTAAGAAATGTTTAGCTTCTGTAGATGTTAAAAACCTTCCTGAAGGAATTCCACACTG
CAGTGTTTATACTCGCACTTCCCTCCAGAGCCTATGACTTGACAGCCTTGGCTTTCTCATCTAG
AAATGAGGGATGCAGGGTCTGTCATCTGTGGCAGAGGCTGGGCGGCACTTGGATGACATAGTGC
ATGTCCCTTCCTCTTACCCATGCATGCTGCCCACCCTAGGCAATGGCATAGAAGCAGTATATAG
ATCAGTGTCCACACACACACACACACATACACACACACACACACACACAAACAAGGAACACCAA
AACAGTGTTGATTGTTGTGTTTAAAGACATGTTTTTTTTTCACCTGAAGAATGGACTTAAACTA
TGTATTGAAAAAAAAATAGCCTAAGTGTTAGAAATGGTGAATGTATCCAGTTTCAGTTACAAAA
ACGATTTCCTGAATTTTAAGCATTCAGTGAGCTGCCAATTTTGATTTTGTGTTGCTCTTTATCC
AAATGGCTTTTTCTTTTCTTCTTTCTTCTTTTTATAAATTGGAGGAAGTGGGGGTGGGGCGGGG
AGCAGCAATATTGTGTTTGACAAATTATACTCTGTACCTGGCTTTCCTGTGTTCTGTTAACCAC
CGAGATGTTTCTATTCCGTTTTGGTTTTATAGTGTCTGTGAGGCACTCGATGCAACCATACAGT
TATTTTCTCATTAAAACTCAGCGTGTGCAGTGTT

hide sequence

RefSeq Acc Id:

XM_006238186 ⟹ XP_006238248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,332,111 - 77,443,638 (+)	NCBI
mRatBN7.2	5	72,536,986 - 72,648,524 (+)	NCBI
Rnor_6.0	5	74,874,245 - 74,985,789 (+)	NCBI
Rnor_5.0	5	78,666,031 - 79,127,060 (+)	NCBI

Sequence:

show sequence

CGAGCCCAGAGGCTGCTGCTCCTGGCAGATGCGCTGGCCCCAGCTTGGGGCTGTGCGGTGTCTT
TCCCTGGACGCTGGGAGCAGCAGGCGGCAGCCGCACCACGCTGGAGCGGAGCCGGAGGACTGCG
CCCACGGAACTGGCGCCTAGAGAAAAGCCCCCAGCTTTCTGACGATGCTAACCAGCTGAGAAAC
AAGCAAGACAACTGTGGTGACAGTCGCCTGGAGCCTGCCGCCAGCTCTCTCTCCCCAGATCACA
AAAACATGGAAATTGGGGTGTCCGTGGCAGAATGTAAAAGTGTACCTGGAATCACCTCTACCCC
CCATTCCAAGGACCACTCCTCCCCTTTCTATTCTCCCTCACACAATGGCCTCCTCACTGATCAC
CACGAGTCTTTAGATAATGATGTCGCCAGAGAGATCCAATACCTAGATGAGGTGCTGGAGGCCA
ACTGCTGCGATTCCTCCGTGGATGGAACTTACAACGGGATCTCTTCCCCAGAGCCTGGTGCAGC
CATACTGGTAAGCAGCCTTGGCTCACCTGCCCACTCAGCCACCAAGGTAGAACCCATTGAGAAA
GCATCTGGTAGGCAGCTGCCTCCTCACATCGAACTCAGTAGAAGCCCTTCTGACAGCATGGCTG
AAGGAGAAAGAGCCAATGGACACTCCACTGACCAGCCTCAAGACATGCTGGGGAATAGCCTGCA
GGCTCCTGCCAGCCCCAGTTCCTCTACCAGCTCCCACTGCTCCTCCCGAGATGGAGAGTTCACA
CTCACCACACTGAAGAAGGAGGCCAAGTTTGAGCTGCGTGCCTTCCACGAGGACAAGAAGCCCT
CCAAGCTCTTTGAGGAGGACGAGCACGAGAAGGAGCAGTTCTGCATCCGGAAAGTGAGGCCCTC
TGAGGAGATGATAGAGCTGGAGAAGGAGCGGAGGGAACTCATTCGGAGTCAGGCTGTGAAGAAG
AATCCTGGCATCGCGGCCAAGTGGTGGAATCCTCCCCAGGAAAAAACTATTGAGGAACAGCTGG
ATGAGGAACATCTGGAGTCACACAGAAAGTACAAGGAGCGCAAAGAGAAAAGGGCACAGCAGGA
ACAGCTACAGTTACAGCAACAGCAGCAGCAGCAGCTACAACAGTTGCAACAGTTGCAGCAGCAG
CAACAGCAGCAGCTGTCCACCTCTCAGCTCTGCACAGCCCCAGCTGCTCATGAACACCTAGATA
GCATTGAACACACAAAGGAGGATGTCGTCACTGAGCAGATTGATTTCTCAGCTGCACGCAAGCA
GTTCCAGCAGATGGAGAATTCCAGGCAAACACTGGCCAAGGGCCAGAGCACACCTAGGCTGTTC
TCCATCAAGCCTTTCTACAAACCTCTTGGATCCATCAACTCGGACAAGCCACCGACCATCTTGC
GACCAGCTACTATCGGGGGAACTGTGGAAGACAGCAGCACACAGGCAGCCAAAGAGCAGAAAGC
TCTCTGTGTATCTGAGAGCCAGTCTGCAGGAGCAGGAACAGGTAATGCTGCCACTCAGGGAAAG
GAAGGGCCATACAGTGAGCCTTCCAAACGCGGGCCCTTATCCAAACTGTGGGCAGAGGATGGAG
AGTTCACAAGTGCCCGGGCCGTCCTTACTGTAGTCAAAGATGAAGATCATGGGATTTTGGACCA
GTTTTCAAGATCGGTCAATGTATCTTTGACCCAGGAGGAGCTGGACTCAGGTTTGGATGAGTTG
TCAGTAAGGTCCCAGGACACCACTGTCCTGGAGACTTTGTCCAATGACTTCAGCATGGACAACA
TAAGTGACAGTGGAGCTTCTAATGAGACACCCAATGCCCTTCAGGAAAACTCTCTGGCTGATTT
CTCCCTGCCTCAGACTCCCCAAACAGACAACCCCTCAGAGGGCCGAGAAGGCGTCTCCAAGTCC
TTCAGTGACCATGGTTTCTATTCTCCTTCCTCCACACTGGGAGATTCCCCATCCGTTGATGACC
CCTTGGAATATCAGGCTGGGCTCCTGGTGCAGAATGCCATTCAACAAGCCATAGCCGAGCAGGT
GGATAAGGCTGAGGTGCACACCAGCAAAGAGGGATCAGAACAGCAGGAACCTGGAGCAATGGTA
GAGGAAGCTGGAAGCCAGGCTCCTGGCTCTGAGAAGCCCCAGGGCATGTTTGCACCACCTCAGG
TGTCCTCTCCCGTTCAAGAGAAAAGGGATGTATTACCAAAGATCCTCCCCGGGGAGGACAAGAC
ACTCAGGGAAAAGGGACCCTCCCAGCCACCCACAGCTGTGCAGCCCAGCGGTCCAGTCAACATG
AAAGAGACCAGGCCTGAAGGAGGGTACTTCAGCAAATACTCAGAGGCAGCCGAGCTGAGAAGCA
CAGCCTCCCTTCTGGCTACTCAAGAGTCTGATGTCATGGTTGGGCCCTTCAAACTGAGGTCAAG
GAAGCAGCGGACTTTGTCCATGATTGAAGAAGAGATCCGGGCAGCCCAGGAAAGGGAAGAGGAG
CTAAAGCGGCAAAGACAAGTGAGGCAAAGCACCCCAAGCCCCAGGGCTCAGAACGCCCCATCGC
TGCCTTCCAGAACCACCTGCTACAAAACTGCTCCAGGGAAAATAGAGAAAGTCAAACCTCCTCC
ATCCCCCACAACTGAAGGTCCCAGCTTGCAGCCTGACTTAGCCCCTGAAGAGGCTGCCGGAGCC
CAGCGGCCCAAGAACCTGATGCAGACCCTCATGGAAGACTATGAGACACACAAATCTAAAAGGC
GCGAGAGAATGGATGATAGTAGTTACACCTCTAAGTTACTGTCTTGCAAGGTGACTTCCGAGGT
CCTGGAGGCCACTCGGGTTAATCGAAGGAAGAGTGCTCTGGCCTTGCGCTGGGAGGCAGGGATT
TATGCCAACCAGGAGGAGGAGGACAATGAATAAACTTCCTTCAGCCCAGGAAACTCCTTGGCCA
AAGAGTTTCCGCAAAGAAACCAAGAAATTATTGAATCAGACGCATTTTAATAGACTACTTATTA
AAGTGCATACAAACTCAATAACCCTCATGTAGACCAGAAGCTGCAATACACAATGATAATAAAA
CAAAACGAAACACAAAAAAGCAAAGCGAAGCGAACAGGAAGTTCACCCATCAAACTCTGAGACG
GGGCAGAGGAGAAAGGGTGTCTTTGTGACTCAAAGAAAGCCTTGGCTTTGGACCATTCCACAAC
TGATCCAAAGGGACACAGACGGGACAAGCAAGTCCACGTAGTTGCTGCAGGCAGAACTGAAGCC
AGCCTCGGCTGGGCGTTACGGAGGAGCAAACAGGCCATTCCAAGGCAACCAACAGGCCCCAGCC
TGGTGCAGCCTACAGCACACAGGCTACCCCTCCACCAGCTTCCCACCCCTTTCTCCGTCAAGGC
ATCAGAAGTGTTGGGTTGACTCCATTTTCTCCAGCAGCCATAAAAACAAATGGTGTTCCTTTCC
ATAGTTGCCCCAAAAGGAGGCAACAAGGATTCGATCTCTCTTATATGTAATCATTTGAAATTGG
GAGCACCTAATGGTCACAATATATATAAAGTCTGTATTTTTAAGGCAATATCTCTTCACGTTGC
AGACGCAATCTATCCTACAGCAGGAGGTTGAGGACGGTGGGGGAGAGAGCCAAACCAAAAGGGT
TATTAGCTTTAGGACCTTGTCTGCTTTTATCGTTGACTGATCAGTTTAGGGAAACACACTTTCA
CGGTTACGTTTCTTCATATGAAAAGTATATTTAGTGAGCAATGACTATTTTTATGATGGGATGG
GGGAACAGGGACACGGGATAAAACCTGTACACATTTGAACGGCTTGGTTCAAGATGGTAGGGGT
ATTTTTAGAATGGCAATAATTGAAAATAAAAGGGGGCAGACTCTGCCTTCAGGAAGGTAGATGA
CCAGAAATAAGGTGTTTGTAACTATTTTCTATTTTAAAGTGGGCCTTAGAGGTGGCTGTGGCAT
AGGATGAGCTGTTTTGGATCTGAGAAAGGCAACCTTAAACGCATGGAGATAGGAAGAGAAAGGG
GCGAGAGAGACAAAGAATGGGAAAGGAAGGAAGGAAGGGAGATTATTTTTGCTGAACAACCAGT
GTTTTCCAGGACGACAGAGAGAAAAATATAGCATAGAAATTTAAGTACACATGTGGAATCAGCT
ACAAATCCTAAAGATGGTGTGTATGCCTTTGTGTGCTTGTATAAGGCATGTATGTTGGTGAGTA
AATATATGCCAGCGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTTGACC
GTGACACATGGGTGTACAGTATTTCCTCTGTAGCTGCCTGTCGACTTCAGGAGTGAGTGACAGT
TTTCTTTTTTTATGAAAAGGCACAGGGAAGACACAGGGCTGATGCAGTATTCCTGATGTCAAGC
TGACTGAACTATGGCATTTGCATGAGTGACAGTCGTGAAGTTTCCAGCAGTTTTGTATTGATAA
TTTGACATTTAGTACACACCCTATTTATTCTCATGCTTTCTGTCCGTGCCTCGTGTACCACAGA
GGACACCGGCTTCATTCTTTCTGTCATTTCAAGCAATATGATAAGGACGTTCACTAATCGGGTG
CCCTGAGTTTCTGAATGAGAAAATGTTTCATTTCTGGCCAGGAAGGGGAGGTGGGAGGAGGGGG
AGAAGGCATGGAAGGGGAAGGAGGAAGAAAAAGAAGAACTAACCAGCCTTCATTATTTTTCCTT
TATTTTTAAGCTATTTCTTACAAGCAATAATTAAATCATACCTTGCTAAAATTCATTTTTGTTT
TTATGTTATTATGTTATAAGATCTAATATGTTATTCTAATGAGTAGCGACTCCACAATACTTAT
ATGCACACTCCACACACTATCTTGGCTTTTTTGTTTTGTTTTGTTTTGTTTTCTTTAAATTAGG
CTAGTGTGACTTTAGGGAAAAGCTTACTCACTAGTAAGTAGTGGGCACAGGTAAAAAGATGGAG
TTGTCTCATGGCTTATAGGGATGCTTAAAAACTACCAAGGGAACGTGTAACTCCAAGACAGATT
CTGCAGTCGCTAGCCAAAATCGTACGCCGGAAGTGCGCGCCGTCTTTAGATGGTTCATTCTTTT
AGACATAATGTTATTAAAAATGCTAGCCACTGAGGACAGAAAGCAAAGGCAGAGAACTGTGCTG
CAAGGAATTTGCTCTTCAGTAAGGGAGGTGGGCCCAGAAGCAAATGTTCCGGAACAGAACGTGA
CATCCATGCCAGATTAGAAGTCCTGCTAGGTAGATGGGCACACGGGAGAAGGGCCATTTTTGTC
GAAGGACTTCCCGCCGGAGGCTGTTTACACGGTGAGATGAAGGCTCCTTCCTTAGGGACACACA
GGAATCAGGACTCGTGGGGGGCGGGGAGGAGAGGGGTAGCTGCAGTGTCCTGGGACCTCCGCCC
CACTCTGGAGAGCAGGGTAGTACTGTGAGTGCTACAGAAAGCAAGCTCCTTCATGATTTCTGGT
ATGTGCTAGCGACTGTGGAAGCATCACAGACCAACTCGCCCATTTTTCACAAAGGGAAACCGTC
CCCTTGGCTTCCTTAAATTTCTTGTCCTGTTTAGAAGGGAAATGTGGACCCTCGTGGAGGGTAC
ACTGAGGAAAGACTTGGCAGCCAGAGCCCACGCACTCCTTGGAGTTCCTTCGGTAGCAGATGAA
GTGGTCTTTTGACTGCAGTAGATTGGATAGGAAGTTCGAACGCTGAGGGATTAGGCTTGTCTGT
AGGTGAGGAGACACAAGTCTCTTCCTGCTTACAGGGCTTTTATCACTGGCCTCTCCATTTCCAA
GTTTTGCTGGTTTCCCTGAGCTGCCTCTAAAGACTGCCATCTGTTTCCTTGCTCCCCTCGATGA
CAGTTCTAGTGTATTTTGTTAGGATAGAAACCGCATCTCCATCAGAGAGAGGTATTTTTTGTTC
TGTGTTCTTTGGGGTATTTTTTTTTATTTGGGGTGGGTGGGGTGATTTATTCGTTTTCTCATTC
AGGAAACATTTGAGCCATTGCTTTGGACATATCACTGTGCTAGGCTCTAGGATCCCACGTGGGC
CCCTGTCACCTTCCCAGTATGGAGCAGATCCCTGGAGGAAAAGTCTTTTCTGCCCCATAAGCCT
GAGATGAAGAGGCTCCTGGTTACTTTTGCCTCGGATGCTCGGCTCTACCCTGCACCAGTACACA
AGCTTGTTAGTCTCAGCTGTAAGAAATGTTTAGCTTCTGTAGATGTTAAAAACCTTCCTGAAGG
AATTCCACACTGCAGTGTTTATACTCGCACTTCCCTCCAGAGCCTATGACTTGACAGCCTTGGC
TTTCTCATCTAGAAATGAGGGATGCAGGGTCTGTCATCTGTGGCAGAGGCTGGGCGGCACTTGG
ATGACATAGTGCATGTCCCTTCCTCTTACCCATGCATGCTGCCCACCCTAGGCAATGGCATAGA
AGCAGTATATAGATCAGTGTCCACACACACACACACACATACACACACACACACACACACAAAC
AAGGAACACCAAAACAGTGTTGATTGTTGTGTTTAAAGACATGTTTTTTTTTCACCTGAAGAAT
GGACTTAAACTATGTATTGAAAAAAAAATAGCCTAAGTGTTAGAAATGGTGAATGTATCCAGTT
TCAGTTACAAAAACGATTTCCTGAATTTTAAGCATTCAGTGAGCTGCCAATTTTGATTTTGTGT
TGCTCTTTATCCAAATGGCTTTTTCTTTTCTTCTTTCTTCTTTTTATAAATTGGAGGAAGTGGG
GGTGGGGCGGGGAGCAGCAATATTGTGTTTGACAAATTATACTCTGTACCTGGCTTTCCTGTGT
TCTGTTAACCACCGAGATGTTTCTATTCCGTTTTGGTTTTATAGTGTCTGTGAGGCACTCGATG
CAACCATACAGTTATTTTCTCATTAAAACTCAGCGTGTGCAGTGTT

hide sequence

RefSeq Acc Id:

XM_039109444 ⟹ XP_038965372

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,399,884 - 77,443,638 (+)	NCBI
mRatBN7.2	5	72,604,746 - 72,648,524 (+)	NCBI

RefSeq Acc Id:

XM_039109446 ⟹ XP_038965374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,399,958 - 77,443,638 (+)	NCBI
mRatBN7.2	5	72,604,746 - 72,648,524 (+)	NCBI

RefSeq Acc Id:

XM_063287308 ⟹ XP_063143378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	76,976,955 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287309 ⟹ XP_063143379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	76,976,955 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287310 ⟹ XP_063143380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	76,976,906 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287311 ⟹ XP_063143381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	76,976,955 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287312 ⟹ XP_063143382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	76,976,955 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287313 ⟹ XP_063143383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	76,976,955 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287314 ⟹ XP_063143384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,108,665 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287315 ⟹ XP_063143385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,369,503 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287316 ⟹ XP_063143386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,388,752 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287317 ⟹ XP_063143387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,369,509 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287318 ⟹ XP_063143388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,332,111 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287319 ⟹ XP_063143389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,388,752 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287320 ⟹ XP_063143390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,369,513 - 77,443,638 (+)	NCBI

RefSeq Acc Id:

XM_063287321 ⟹ XP_063143391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	77,332,112 - 77,443,638 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011974	(Get FASTA)	NCBI Sequence Viewer
	NP_001292924	(Get FASTA)	NCBI Sequence Viewer
	NP_001296189	(Get FASTA)	NCBI Sequence Viewer
	NP_001412329	(Get FASTA)	NCBI Sequence Viewer
	XP_006238247	(Get FASTA)	NCBI Sequence Viewer
	XP_006238248	(Get FASTA)	NCBI Sequence Viewer
	XP_038965372	(Get FASTA)	NCBI Sequence Viewer
	XP_038965374	(Get FASTA)	NCBI Sequence Viewer
	XP_063143378	(Get FASTA)	NCBI Sequence Viewer
	XP_063143379	(Get FASTA)	NCBI Sequence Viewer
	XP_063143380	(Get FASTA)	NCBI Sequence Viewer
	XP_063143381	(Get FASTA)	NCBI Sequence Viewer
	XP_063143382	(Get FASTA)	NCBI Sequence Viewer
	XP_063143383	(Get FASTA)	NCBI Sequence Viewer
	XP_063143384	(Get FASTA)	NCBI Sequence Viewer
	XP_063143385	(Get FASTA)	NCBI Sequence Viewer
	XP_063143386	(Get FASTA)	NCBI Sequence Viewer
	XP_063143387	(Get FASTA)	NCBI Sequence Viewer
	XP_063143388	(Get FASTA)	NCBI Sequence Viewer
	XP_063143389	(Get FASTA)	NCBI Sequence Viewer
	XP_063143390	(Get FASTA)	NCBI Sequence Viewer
	XP_063143391	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85790	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000077701
	ENSRNOP00000087137
	ENSRNOP00000089455
	ENSRNOP00000090369
	ENSRNOP00000092250
GenBank Protein	Q5U301	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001011974 ⟸ NM_001011974
- Peptide Label:	isoform 2
- UniProtKB:	Q5U301 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEIGVSVAECKSVPGITSTPHSKDHSSPFYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANC CDSSVDGTYNGISSPEPGAAILVSSLGSPAHSATKVEPIEKASGRQLPPHIELSRSPSDSMAEG ERANGHSTDQPQDMLGNSLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK LFEEDEHEKEQFCIRKVRPSEEMIELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDE EHLESHRKYKERKEKRAQQEQLQLQQQQQQQLQQLQQLQQQQQQQLSTSQLCTAPAAHEHLDSI EHTKEDVVTEQIDFSAARKQFQQMENSRQTLAKGQSTPRLFSIKPFYKPLGSINSDKPPTILRP ATIGGTVEDSSTQAAKEQKALCVSESQSAGAGTGNAATQGKEGPYSEPSKRGPLSKLWAEDGEF TSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNIS DSGASNETPNALQENSLADFSLPQTPQTDNPSEGREGVSKSFSDHGFYSPSSTLGDSPSVDDPL EYQAGLLVQNAIQQAIAEQVDKAEVHTSKEGSEQQEPGAMVEEAGSQAPGSEKPQGMFAPPQVS SPVQEKRDVLPKILPGEDKTLREKGPSQPPTAVQPSGPVNMKETRPEGGYFSKYSEAAELRSTA SLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVRQSTPSPRAQNAPSLP SRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGAQRPKNLMQTLMEDYETHKSKRRE RMDDSSVLEATRVNRRKSALALRWEAGIYANQEEEDNE hide sequence

RefSeq Acc Id:	XP_006238248 ⟸ XM_006238186
- Peptide Label:	isoform X11
- UniProtKB:	Q5U301 (UniProtKB/Swiss-Prot), A0A8I6A5A3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIGVSVAECKSVPGITSTPHSKDHSSPFYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANC CDSSVDGTYNGISSPEPGAAILVSSLGSPAHSATKVEPIEKASGRQLPPHIELSRSPSDSMAEG ERANGHSTDQPQDMLGNSLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK LFEEDEHEKEQFCIRKVRPSEEMIELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDE EHLESHRKYKERKEKRAQQEQLQLQQQQQQQLQQLQQLQQQQQQQLSTSQLCTAPAAHEHLDSI EHTKEDVVTEQIDFSAARKQFQQMENSRQTLAKGQSTPRLFSIKPFYKPLGSINSDKPPTILRP ATIGGTVEDSSTQAAKEQKALCVSESQSAGAGTGNAATQGKEGPYSEPSKRGPLSKLWAEDGEF TSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNIS DSGASNETPNALQENSLADFSLPQTPQTDNPSEGREGVSKSFSDHGFYSPSSTLGDSPSVDDPL EYQAGLLVQNAIQQAIAEQVDKAEVHTSKEGSEQQEPGAMVEEAGSQAPGSEKPQGMFAPPQVS SPVQEKRDVLPKILPGEDKTLREKGPSQPPTAVQPSGPVNMKETRPEGGYFSKYSEAAELRSTA SLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVRQSTPSPRAQNAPSLP SRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGAQRPKNLMQTLMEDYETHKSKRRE RMDDSSYTSKLLSCKVTSEVLEATRVNRRKSALALRWEAGIYANQEEEDNE hide sequence

RefSeq Acc Id:	XP_006238247 ⟸ XM_006238185
- Peptide Label:	isoform X11
- UniProtKB:	Q5U301 (UniProtKB/Swiss-Prot), A0A8I6A5A3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIGVSVAECKSVPGITSTPHSKDHSSPFYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANC CDSSVDGTYNGISSPEPGAAILVSSLGSPAHSATKVEPIEKASGRQLPPHIELSRSPSDSMAEG ERANGHSTDQPQDMLGNSLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK LFEEDEHEKEQFCIRKVRPSEEMIELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDE EHLESHRKYKERKEKRAQQEQLQLQQQQQQQLQQLQQLQQQQQQQLSTSQLCTAPAAHEHLDSI EHTKEDVVTEQIDFSAARKQFQQMENSRQTLAKGQSTPRLFSIKPFYKPLGSINSDKPPTILRP ATIGGTVEDSSTQAAKEQKALCVSESQSAGAGTGNAATQGKEGPYSEPSKRGPLSKLWAEDGEF TSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNIS DSGASNETPNALQENSLADFSLPQTPQTDNPSEGREGVSKSFSDHGFYSPSSTLGDSPSVDDPL EYQAGLLVQNAIQQAIAEQVDKAEVHTSKEGSEQQEPGAMVEEAGSQAPGSEKPQGMFAPPQVS SPVQEKRDVLPKILPGEDKTLREKGPSQPPTAVQPSGPVNMKETRPEGGYFSKYSEAAELRSTA SLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVRQSTPSPRAQNAPSLP SRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGAQRPKNLMQTLMEDYETHKSKRRE RMDDSSYTSKLLSCKVTSEVLEATRVNRRKSALALRWEAGIYANQEEEDNE hide sequence

RefSeq Acc Id:	NP_001296189 ⟸ NM_001309260
- Peptide Label:	isoform 1
- UniProtKB:	Q5U301 (UniProtKB/Swiss-Prot), A0A8I6A5A3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIGVSVAECKSVPGITSTPHSKDHSSPFYSPSHNGLLTDHHESLDNDVAREIQYLDEVLEANC CDSSVDGTYNGISSPEPGAAILVSSLGSPAHSATKVEPIEKASGRQLPPHIELSRSPSDSMAEG ERANGHSTDQPQDMLGNSLQAPASPSSSTSSHCSSRDGEFTLTTLKKEAKFELRAFHEDKKPSK LFEEDEHEKEQFCIRKVRPSEEMIELEKERRELIRSQAVKKNPGIAAKWWNPPQEKTIEEQLDE EHLESHRKYKERKEKRAQQEQLQLQQQQQQQLQQLQQLQQQQQQQLSTSQLCTAPAAHEHLDSI EHTKEDVVTEQIDFSAARKQFQQMENSRQTLAKGQSTPRLFSIKPFYKPLGSINSDKPPTILRP ATIGGTVEDSSTQAAKEQKALCVSESQSAGAGTGNAATQGKEGPYSEPSKRGPLSKLWAEDGEF TSARAVLTVVKDEDHGILDQFSRSVNVSLTQEELDSGLDELSVRSQDTTVLETLSNDFSMDNIS DSGASNETPNALQENSLADFSLPQTPQTDNPSEGREGVSKSFSDHGFYSPSSTLGDSPSVDDPL EYQAGLLVQNAIQQAIAEQVDKAEVHTSKEGSEQQEPGAMVEEAGSQAPGSEKPQGMFAPPQVS SPVQEKRDVLPKILPGEDKTLREKGPSQPPTAVQPSGPVNMKETRPEGGYFSKYSEAAELRSTA SLLATQESDVMVGPFKLRSRKQRTLSMIEEEIRAAQEREEELKRQRQVRQSTPSPRAQNAPSLP SRTTCYKTAPGKIEKVKPPPSPTTEGPSLQPDLAPEEAAGAQRPKNLMQTLMEDYETHKSKRRE RMDDSSYTSKLLSCKVTSEVLEATRVNRRKSALALRWEAGIYANQEEEDNE hide sequence

Ensembl Acc Id:

ENSRNOP00000067989 ⟸ ENSRNOT00000076918

Ensembl Acc Id:

ENSRNOP00000015576 ⟸ ENSRNOT00000015576

RefSeq Acc Id:	XP_038965372 ⟸ XM_039109444
- Peptide Label:	isoform X12
- UniProtKB:	Q5U301 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038965374 ⟸ XM_039109446
- Peptide Label:	isoform X15
- UniProtKB:	F1LPQ9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089455 ⟸ ENSRNOT00000098662

Ensembl Acc Id:

ENSRNOP00000087434 ⟸ ENSRNOT00000097969

Ensembl Acc Id:

ENSRNOP00000087137 ⟸ ENSRNOT00000097436

Ensembl Acc Id:

ENSRNOP00000092250 ⟸ ENSRNOT00000117085

Ensembl Acc Id:

ENSRNOP00000077701 ⟸ ENSRNOT00000106097

Ensembl Acc Id:

ENSRNOP00000030796 ⟸ ENSRNOT00000030913

Ensembl Acc Id:

ENSRNOP00000090369 ⟸ ENSRNOT00000114485

Ensembl Acc Id:

ENSRNOP00000078673 ⟸ ENSRNOT00000117632

RefSeq Acc Id:	NP_001292924 ⟸ NM_001305995
- Peptide Label:	isoform 3
- UniProtKB:	D4A4D8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEAELHKERLQAIAEKRKRQTEIEGKRQQLDEQVLLLQHSKSKVLREKWLLQGVPAGTAEEEE ARRRQSEEDEFKVKQLEDNIQRLEQEIQALESEESQISAKEQIILEKLKETEKSFKDLQKSFST ADGAIYAMEINVEKDKQTGETKILSASTIGPEGVHQRGVKVYDDGTKVVYEVHSGGTVVENGVH KLSAKDVEELIQKAGQSSFRGHMSERTVVADGSLGHPKEHMLCKEAKLEMVQKSRKDQSSGNPG HQAQPPSTEGPEVNLDQPVTMIFMGYQNIEDEEETKKVLGYDETIKAELVLIDEDDEKSLREKT VTDVSTIDGNAAELVSGRPMSDTTEPSSPEDKEESLATDPAPGTQKKKRCQCCVVM hide sequence

RefSeq Acc Id:	XP_063143380 ⟸ XM_063287310
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5Y1X4 (UniProtKB/TrEMBL), A0A8I6ACD4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143378 ⟸ XM_063287308
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AAB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143379 ⟸ XM_063287309
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AAB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143381 ⟸ XM_063287311
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AAB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143382 ⟸ XM_063287312
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AAB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143383 ⟸ XM_063287313
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6ACD4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143384 ⟸ XM_063287314
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6ACD4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001412329 ⟸ NM_001425400
- Peptide Label:	isoform 4
- UniProtKB:	A0A8I6AAB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143388 ⟸ XM_063287318
- Peptide Label:	isoform X12
- UniProtKB:	Q5U301 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063143391 ⟸ XM_063287321
- Peptide Label:	isoform X15
- UniProtKB:	F1LPQ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143385 ⟸ XM_063287315
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6G255 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143387 ⟸ XM_063287317
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6ADB4 (UniProtKB/TrEMBL), A0A8I6G255 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143390 ⟸ XM_063287320
- Peptide Label:	isoform X14
- UniProtKB:	F1LPQ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143386 ⟸ XM_063287316
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6G255 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063143389 ⟸ XM_063287319
- Peptide Label:	isoform X13
- UniProtKB:	F1LPQ9 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U301-F1-model_v2	AlphaFold	Q5U301	1-870	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693765

Promoter ID:

EPDNEW_R4285

Type:

multiple initiation site

Name:

Akap2_2

Description:

A-kinase anchoring protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4286

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	74,874,271 - 74,874,331	EPDNEW

RGD ID:

13693762

Promoter ID:

EPDNEW_R4286

Type:

initiation region

Name:

Akap2_1

Description:

A-kinase anchoring protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4285

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	74,942,087 - 74,942,147	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305135	AgrOrtholog
BioCyc Gene	G2FUF-41196	BioCyc
Ensembl Genes	ENSRNOG00000011504	Ensembl, ENTREZGENE
	ENSRNOG00000025558	Ensembl
Ensembl Transcript	ENSRNOT00000097436	ENTREZGENE
	ENSRNOT00000098662	ENTREZGENE
	ENSRNOT00000106097	ENTREZGENE
	ENSRNOT00000114485	ENTREZGENE
	ENSRNOT00000117085	ENTREZGENE
IMAGE_CLONE	IMAGE:7108964	IMAGE-MGC_LOAD
InterPro	AKAP2_C	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93771	IMAGE-MGC_LOAD
NCBI Gene	298024	ENTREZGENE
PANTHER	PALM2 AND AKAP2 FUSION-RELATED	UniProtKB/Swiss-Prot
	PARALEMMIN-RELATED	UniProtKB/Swiss-Prot
Pfam	AKAP2_C	UniProtKB/Swiss-Prot
PhenoGen	Pakap	PhenoGen
RatGTEx	ENSRNOG00000011504	RatGTEx
	ENSRNOG00000025558	RatGTEx
UniProt	A0A8I5Y1X4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A5A3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AAB5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ACD4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ADB4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G255	ENTREZGENE, UniProtKB/TrEMBL
	AKAP2_RAT	UniProtKB/Swiss-Prot
	D4A4D8	ENTREZGENE
	F1LPQ9	ENTREZGENE
	Q5U301	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-11-14	Pakap	paralemmin A kinase anchor protein	Akap2	A-kinase anchoring protein 2	Name and Symbol changed	629549	APPROVED
2023-11-14	Akap2	A-kinase anchoring protein 2	Palm2	paralemmin 2	Data merged from RGD:6497336	737654	PROVISIONAL
2015-11-25	Akap2	A-kinase anchoring protein 2	Akap2	A kinase (PRKA) anchor protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-08	Palm2	paralemmin 2	LOC100910655	paralemmin-2-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100910655	paralemmin-2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Akap2	A kinase (PRKA) anchor protein 2	Akap2_predicted	A kinase (PRKA) anchor protein 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Akap2_predicted	A kinase (PRKA) anchor protein 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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