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Gene: Kif21a (kinesin family member 21A) Rattus norvegicus

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Symbol:

Kif21a

Name:

kinesin family member 21A

RGD ID:

1305126

Description:

Predicted to enable several functions, including ATP hydrolysis activity; ankyrin repeat binding activity; and plus-end-directed microtubule motor activity. Involved in anterograde axonal transport. Is active in presynapse. Human ortholog(s) of this gene implicated in congenital fibrosis of the extraocular muscles 1. Orthologous to human KIF21A (kinesin family member 21A); INTERACTS WITH 17beta-estradiol; 2,6-dinitrotoluene; 2-methoxyethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

kinesin-like protein KIF21A; LOC300158

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIF21A (kinesin family member 21A)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Kif21a (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kif21a (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIF21A (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIF21A (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kif21a (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIF21A (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIF21A (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kif21a (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Kif21a (kinesin family member 21A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	KIF21A (kinesin family member 21A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Kif21a (kinesin family member 21A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:cabz01066312.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	kif21a (kinesin family member 21A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	klp-12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	klp-12	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Klp31E	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Klp31E	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kif21a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kif21a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl				GRCr8
mRatBN7.2	7	122,062,523 - 122,179,051 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	123,854,939 - 123,970,301 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	126,081,032 - 126,196,407 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	126,006,588 - 126,123,573 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	132,069,962 - 132,200,947 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	131,745,370 - 131,874,205 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	129,337,712 - 129,456,728 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	118,514,265 - 118,629,868 (-)	NCBI		Celera
RGSC_v3.1	7	129,372,341 - 129,490,867 (-)	NCBI
Cytogenetic Map	7	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aniridia (ISO)

congenital fibrosis of the extraocular muscles (ISO,ISS)

congenital fibrosis of the extraocular muscles 1 (ISO)

COVID-19 (ISO)

genetic disease (ISO)

lung small cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,6-dinitrotoluene (EXP)

2-methoxyethanol (EXP)

2-palmitoylglycerol (ISO)

7,12-dimethyltetraphene (ISO)

acetylsalicylic acid (ISO)

aflatoxin B1 (EXP,ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dicyclanil (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

lead(0) (ISO)

methylparaben (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

quercetin (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (EXP,ISO)

Triptolide (EXP)

triptonide (ISO)

valdecoxib (EXP)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde axonal transport (IDA,IMP)

biological_process (ND)

cortical microtubule organization (IEA,ISO)

microtubule-based movement (IBA,IEA)

regulation of axon guidance (IEA,ISO)

regulation of microtubule depolymerization (IEA,ISO)

regulation of microtubule polymerization (IEA,ISO)

Cellular Component

axon (IEA)

axon cytoplasm (IEA)

axonal growth cone (IEA,ISO)

cell cortex (IEA)

cytoplasm (IBA)

cytoskeleton (IEA)

dendrite (IEA)

growth cone (IEA)

kinesin complex (IBA)

microtubule (IBA,IEA)

presynapse (IDA,IMP)

Molecular Function

ankyrin repeat binding (IEA,ISO)

ATP binding (IEA)

ATP hydrolysis activity (IBA)

cytoskeletal motor activity (IEA)

microtubule binding (IBA,IEA)

microtubule motor activity (IBA,IEA)

nucleotide binding (IEA)

plus-end-directed microtubule motor activity (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KIF21A-mediated axonal transport and selective endocytosis underlie the polarized targeting of NCKX2.	Lee KH, etal., J Neurosci. 2012 Mar 21;32(12):4102-17. doi: 10.1523/JNEUROSCI.6331-11.2012.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Heterozygous mutations of the kinesin KIF21A in congenital fibrosis of the extraocular muscles type 1 (CFEOM1).	Yamada K, etal., Nat Genet. 2003 Dec;35(4):318-21. Epub 2003 Nov 2.

Additional References at PubMed

PMID:17728463	PMID:25931508

Genomics

Comparative Map Data

Kif21a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl				GRCr8
mRatBN7.2	7	122,062,523 - 122,179,051 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	123,854,939 - 123,970,301 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	126,081,032 - 126,196,407 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	126,006,588 - 126,123,573 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	132,069,962 - 132,200,947 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	131,745,370 - 131,874,205 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	129,337,712 - 129,456,728 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	118,514,265 - 118,629,868 (-)	NCBI		Celera
RGSC_v3.1	7	129,372,341 - 129,490,867 (-)	NCBI
Cytogenetic Map	7	q35	NCBI

KIF21A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	39,293,228 - 39,443,120 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	39,293,228 - 39,443,718 (-)	Ensembl			hg38	GRCh38
GRCh37	12	39,687,030 - 39,836,922 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	37,973,297 - 38,123,185 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	37,973,297 - 38,123,185	NCBI
Celera	12	38,491,506 - 38,641,417 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI
HuRef	12	36,712,926 - 36,863,016 (-)	NCBI		HuRef
CHM1_1	12	39,653,038 - 39,803,195 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	39,243,102 - 39,393,006 (-)	NCBI		T2T-CHM13v2.0

Kif21a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	90,817,478 - 90,934,547 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	90,817,479 - 90,934,151 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	90,933,275 - 91,050,382 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	90,933,276 - 91,049,948 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	90,763,707 - 90,880,379 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	90,762,150 - 90,877,578 (-)	NCBI		MGSCv36	mm8
Celera	15	93,057,433 - 93,174,641 (-)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	45.86	NCBI

Kif21a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955505	933,270 - 998,853 (+)	Ensembl
ChiLan1.0	NW_004955505	933,254 - 1,000,039 (+)	NCBI	ChiLan1.0	ChiLan1.0

KIF21A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	54,703,810 - 54,853,692 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	54,700,566 - 54,850,429 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	49,260,728 - 49,410,599 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	50,119,602 - 50,268,857 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	50,120,004 - 50,267,664 (+)	Ensembl			panPan2	panpan1.1

KIF21A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	14,205,980 - 14,328,281 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	14,181,837 - 14,327,492 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	32,106,413 - 32,253,458 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	14,349,652 - 14,496,915 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	14,349,861 - 14,496,908 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	14,158,284 - 14,305,216 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	14,196,495 - 14,343,909 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	32,254,554 - 32,401,776 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Kif21a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	74,589,439 - 74,734,072 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936607	1,423,217 - 1,566,268 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936607	1,422,801 - 1,567,442 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIF21A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	70,889,000 - 71,029,809 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	70,888,999 - 71,029,832 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	73,379,320 - 73,586,144 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIF21A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	35,552,583 - 35,709,117 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	35,552,398 - 35,709,070 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	211,087,796 - 211,244,317 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kif21a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624778	1,040,468 - 1,186,831 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624778	1,040,829 - 1,184,417 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Kif21a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	263,931,106 - 264,046,797 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Kif21a
974 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	491
Count of miRNA genes:	136
Interacting mature miRNAs:	147
Transcripts:	ENSRNOT00000038946, ENSRNOT00000044092, ENSRNOT00000045553, ENSRNOT00000046744, ENSRNOT00000055742, ENSRNOT00000066528
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	119280025	135560836	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
1582240	Sffal1	Serum free fatty acids level QTL 1	3.4	0.0021	blood free fatty acid amount (VT:0001553)	serum free fatty acids level (CMO:0000547)	7	118556868	125929417	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	116269196	132020414	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

BE107582

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	122,074,905 - 122,075,073 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	132,082,345 - 132,082,512	NCBI	Rnor6.0
Rnor_5.0	7	131,757,753 - 131,757,920	UniSTS	Rnor5.0
RGSC_v3.4	7	129,349,343 - 129,349,510	UniSTS	RGSC3.4
Celera	7	118,526,650 - 118,526,817	UniSTS
RH 3.4 Map	7	967.7	UniSTS
Cytogenetic Map	7	q35	UniSTS

BE120060

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	122,103,887 - 122,104,062 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	132,111,573 - 132,111,747	NCBI	Rnor6.0
Rnor_5.0	7	131,786,981 - 131,787,155	UniSTS	Rnor5.0
RGSC_v3.4	7	129,378,565 - 129,378,739	UniSTS	RGSC3.4
Celera	7	118,555,709 - 118,555,883	UniSTS
RH 3.4 Map	7	967.3	UniSTS
Cytogenetic Map	7	q35	UniSTS

BE115225

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	7	966.8	UniSTS
Cytogenetic Map	7	q35	UniSTS

BE115241

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	122,108,333 - 122,108,505 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	132,116,019 - 132,116,190	NCBI	Rnor6.0
Rnor_5.0	7	131,791,427 - 131,791,598	UniSTS	Rnor5.0
RGSC_v3.4	7	129,383,011 - 129,383,182	UniSTS	RGSC3.4
Celera	7	118,560,155 - 118,560,326	UniSTS
RH 3.4 Map	7	967.7	UniSTS
Cytogenetic Map	7	q35	UniSTS

ECD03969

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	7	118,598,565 - 118,599,489	UniSTS
Cytogenetic Map	7	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	82	59	6	346	182	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001371538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ096185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038946 ⟹ ENSRNOP00000031911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000044092 ⟹ ENSRNOP00000044677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,004,010 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,124,466 (-)	Ensembl
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000045553 ⟹ ENSRNOP00000039402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000046744 ⟹ ENSRNOP00000040915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000055742 ⟹ ENSRNOP00000052600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,004,010 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,124,466 (-)	Ensembl
Rnor_6.0 Ensembl	7	132,116,609 - 132,143,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000066528 ⟹ ENSRNOP00000059755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl
Rnor_6.0 Ensembl	7	132,071,116 - 132,143,470 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110094 ⟹ ENSRNOP00000094508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110235 ⟹ ENSRNOP00000092894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119582 ⟹ ENSRNOP00000085651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl
mRatBN7.2 Ensembl	7	122,062,537 - 122,178,999 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000129970 ⟹ ENSRNOP00000100461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	123,942,081 - 124,058,540 (-)	Ensembl

RefSeq Acc Id:

NM_001371538 ⟹ NP_001358467

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,540 (-)	NCBI
mRatBN7.2	7	122,062,535 - 122,178,999 (-)	NCBI

RefSeq Acc Id:

XM_039078881 ⟹ XP_038934809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,179,051 (-)	NCBI

RefSeq Acc Id:

XM_039078882 ⟹ XP_038934810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,415 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078887 ⟹ XP_038934815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,411 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078888 ⟹ XP_038934816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,412 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078892 ⟹ XP_038934820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,410 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078893 ⟹ XP_038934821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,409 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078896 ⟹ XP_038934824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,410 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078898 ⟹ XP_038934826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,411 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_039078899 ⟹ XP_038934827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,409 (-)	NCBI
mRatBN7.2	7	122,062,523 - 122,130,829 (-)	NCBI

RefSeq Acc Id:

XM_063263348 ⟹ XP_063119418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,415 (-)	NCBI

RefSeq Acc Id:

XM_063263349 ⟹ XP_063119419

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI

RefSeq Acc Id:

XM_063263350 ⟹ XP_063119420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,414 (-)	NCBI

RefSeq Acc Id:

XM_063263351 ⟹ XP_063119421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,415 (-)	NCBI

RefSeq Acc Id:

XM_063263352 ⟹ XP_063119422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,415 (-)	NCBI

RefSeq Acc Id:

XM_063263353 ⟹ XP_063119423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,415 (-)	NCBI

RefSeq Acc Id:

XM_063263354 ⟹ XP_063119424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI

RefSeq Acc Id:

XM_063263355 ⟹ XP_063119425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,412 (-)	NCBI

RefSeq Acc Id:

XM_063263356 ⟹ XP_063119426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,411 (-)	NCBI

RefSeq Acc Id:

XM_063263357 ⟹ XP_063119427

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,412 (-)	NCBI

RefSeq Acc Id:

XM_063263358 ⟹ XP_063119428

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,413 (-)	NCBI

RefSeq Acc Id:

XM_063263359 ⟹ XP_063119429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI

RefSeq Acc Id:

XM_063263360 ⟹ XP_063119430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,410 (-)	NCBI

RefSeq Acc Id:

XM_063263361 ⟹ XP_063119431

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,412 (-)	NCBI

RefSeq Acc Id:

XM_063263362 ⟹ XP_063119432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI

RefSeq Acc Id:

XM_063263363 ⟹ XP_063119433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,058,594 (-)	NCBI

RefSeq Acc Id:

XM_063263364 ⟹ XP_063119434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,411 (-)	NCBI

RefSeq Acc Id:

XM_063263365 ⟹ XP_063119435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,412 (-)	NCBI

RefSeq Acc Id:

XM_063263366 ⟹ XP_063119436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	123,942,079 - 124,010,410 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001358467	(Get FASTA)	NCBI Sequence Viewer
	XP_038934809	(Get FASTA)	NCBI Sequence Viewer
	XP_038934810	(Get FASTA)	NCBI Sequence Viewer
	XP_038934815	(Get FASTA)	NCBI Sequence Viewer
	XP_038934816	(Get FASTA)	NCBI Sequence Viewer
	XP_038934820	(Get FASTA)	NCBI Sequence Viewer
	XP_038934821	(Get FASTA)	NCBI Sequence Viewer
	XP_038934824	(Get FASTA)	NCBI Sequence Viewer
	XP_038934826	(Get FASTA)	NCBI Sequence Viewer
	XP_038934827	(Get FASTA)	NCBI Sequence Viewer
	XP_063119418	(Get FASTA)	NCBI Sequence Viewer
	XP_063119419	(Get FASTA)	NCBI Sequence Viewer
	XP_063119420	(Get FASTA)	NCBI Sequence Viewer
	XP_063119421	(Get FASTA)	NCBI Sequence Viewer
	XP_063119422	(Get FASTA)	NCBI Sequence Viewer
	XP_063119423	(Get FASTA)	NCBI Sequence Viewer
	XP_063119424	(Get FASTA)	NCBI Sequence Viewer
	XP_063119425	(Get FASTA)	NCBI Sequence Viewer
	XP_063119426	(Get FASTA)	NCBI Sequence Viewer
	XP_063119427	(Get FASTA)	NCBI Sequence Viewer
	XP_063119428	(Get FASTA)	NCBI Sequence Viewer
	XP_063119429	(Get FASTA)	NCBI Sequence Viewer
	XP_063119430	(Get FASTA)	NCBI Sequence Viewer
	XP_063119431	(Get FASTA)	NCBI Sequence Viewer
	XP_063119432	(Get FASTA)	NCBI Sequence Viewer
	XP_063119433	(Get FASTA)	NCBI Sequence Viewer
	XP_063119434	(Get FASTA)	NCBI Sequence Viewer
	XP_063119435	(Get FASTA)	NCBI Sequence Viewer
	XP_063119436	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76595	(Get FASTA)	NCBI Sequence Viewer
	EDL76596	(Get FASTA)	NCBI Sequence Viewer
	EDL76597	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000031911
	ENSRNOP00000031911.6
	ENSRNOP00000039402.5
	ENSRNOP00000040915
	ENSRNOP00000040915.5
	ENSRNOP00000044677
	ENSRNOP00000044677.4
	ENSRNOP00000052600
	ENSRNOP00000052600.4
	ENSRNOP00000059755.4
	ENSRNOP00000085651
	ENSRNOP00000085651.2
	ENSRNOP00000092894
	ENSRNOP00000092894.2
	ENSRNOP00000094508.2
	ENSRNOP00000100461.1

Ensembl Acc Id:

ENSRNOP00000052600 ⟸ ENSRNOT00000055742

Ensembl Acc Id:

ENSRNOP00000039402 ⟸ ENSRNOT00000045553

Ensembl Acc Id:

ENSRNOP00000031911 ⟸ ENSRNOT00000038946

Ensembl Acc Id:

ENSRNOP00000059755 ⟸ ENSRNOT00000066528

Ensembl Acc Id:

ENSRNOP00000040915 ⟸ ENSRNOT00000046744

Ensembl Acc Id:

ENSRNOP00000044677 ⟸ ENSRNOT00000044092

RefSeq Acc Id:	XP_038934809 ⟸ XM_039078881
- Peptide Label:	isoform X1
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934826 ⟸ XM_039078898
- Peptide Label:	isoform X25
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934816 ⟸ XM_039078888
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6AMC6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934827 ⟸ XM_039078899
- Peptide Label:	isoform X27
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934824 ⟸ XM_039078896
- Peptide Label:	isoform X23
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934821 ⟸ XM_039078893
- Peptide Label:	isoform X17
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934820 ⟸ XM_039078892
- Peptide Label:	isoform X13
- UniProtKB:	D3ZSN6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934815 ⟸ XM_039078887
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6A1X3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934810 ⟸ XM_039078882
- Peptide Label:	isoform X2
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001358467 ⟸ NM_001371538
- UniProtKB:	D3ZCG2 (UniProtKB/TrEMBL), D3ZYN2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092894 ⟸ ENSRNOT00000110235

Ensembl Acc Id:

ENSRNOP00000094508 ⟸ ENSRNOT00000110094

Ensembl Acc Id:

ENSRNOP00000085651 ⟸ ENSRNOT00000119582

RefSeq Acc Id:	XP_063119433 ⟸ XM_063263363
- Peptide Label:	isoform X22
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119432 ⟸ XM_063263362
- Peptide Label:	isoform X21
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119424 ⟸ XM_063263354
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6AEJ5 (UniProtKB/TrEMBL), A0A8I6AMC6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119429 ⟸ XM_063263359
- Peptide Label:	isoform X18
- UniProtKB:	D4A1V5 (UniProtKB/TrEMBL), D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119419 ⟸ XM_063263349
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A1X3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119422 ⟸ XM_063263352
- Peptide Label:	isoform X7
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119421 ⟸ XM_063263351
- Peptide Label:	isoform X6
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119418 ⟸ XM_063263348
- Peptide Label:	isoform X3
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119423 ⟸ XM_063263353
- Peptide Label:	isoform X10
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119420 ⟸ XM_063263350
- Peptide Label:	isoform X5
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119428 ⟸ XM_063263358
- Peptide Label:	isoform X16
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119435 ⟸ XM_063263365
- Peptide Label:	isoform X26
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119427 ⟸ XM_063263357
- Peptide Label:	isoform X15
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119431 ⟸ XM_063263361
- Peptide Label:	isoform X20
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119425 ⟸ XM_063263355
- Peptide Label:	isoform X12
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119434 ⟸ XM_063263364
- Peptide Label:	isoform X24
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119426 ⟸ XM_063263356
- Peptide Label:	isoform X14
- UniProtKB:	D3ZYN2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119436 ⟸ XM_063263366
- Peptide Label:	isoform X28
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119430 ⟸ XM_063263360
- Peptide Label:	isoform X19
- UniProtKB:	D3ZJJ7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100461 ⟸ ENSRNOT00000129970

Protein Domains

Kinesin motor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZCG2-F1-model_v2	AlphaFold	D3ZCG2	1-1658	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305126	AgrOrtholog
BioCyc Gene	G2FUF-32408	BioCyc
Ensembl Genes	ENSRNOG00000014844	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000038946	ENTREZGENE
	ENSRNOT00000038946.9	UniProtKB/TrEMBL
	ENSRNOT00000044092	ENTREZGENE
	ENSRNOT00000044092.7	UniProtKB/TrEMBL
	ENSRNOT00000045553.7	UniProtKB/TrEMBL
	ENSRNOT00000046744	ENTREZGENE
	ENSRNOT00000046744.7	UniProtKB/TrEMBL
	ENSRNOT00000055742	ENTREZGENE
	ENSRNOT00000055742.6	UniProtKB/TrEMBL
	ENSRNOT00000066528.6	UniProtKB/TrEMBL
	ENSRNOT00000110094.2	UniProtKB/TrEMBL
	ENSRNOT00000110235	ENTREZGENE
	ENSRNOT00000110235.2	UniProtKB/TrEMBL
	ENSRNOT00000119582	ENTREZGENE
	ENSRNOT00000119582.2	UniProtKB/TrEMBL
	ENSRNOT00000129970.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	3.40.850.10	UniProtKB/TrEMBL
InterPro	KIF21A/B_hel_1	UniProtKB/TrEMBL
	KIF21A/B_hel_2	UniProtKB/TrEMBL
	Kinesin-like_fam	UniProtKB/TrEMBL
	Kinesin_motor_CS	UniProtKB/TrEMBL
	Kinesin_motor_dom	UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	300158	ENTREZGENE
PANTHER	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	UniProtKB/TrEMBL
	KINESIN FAMILY MEMBER 21A	UniProtKB/TrEMBL
Pfam	KIF21A	UniProtKB/TrEMBL
	KIF21A_2nd	UniProtKB/TrEMBL
	KIF21A_4th	UniProtKB/TrEMBL
	Kinesin	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
PhenoGen	Kif21a	PhenoGen
PRINTS	KINESINHEAVY	UniProtKB/TrEMBL
PROSITE	KINESIN_MOTOR_DOMAIN1	UniProtKB/TrEMBL
	KINESIN_MOTOR_DOMAIN2	UniProtKB/TrEMBL
	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014844	RatGTEx
SMART	KISc	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	Prefoldin	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I6A1X3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AEJ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMC6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJP6_RAT	UniProtKB/TrEMBL
	D3ZCG2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJJ7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSN6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYN2	ENTREZGENE, UniProtKB/TrEMBL
	D4A1V5	ENTREZGENE, UniProtKB/TrEMBL
	D4ADI4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Kif21a	kinesin family member 21A	Kif21a_predicted	kinesin family member 21A (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Kif21a_predicted	kinesin family member 21A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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