Atl2 (atlastin GTPase 2) - Rat Genome Database

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Gene: Atl2 (atlastin GTPase 2) Rattus norvegicus
Analyze
Symbol: Atl2
Name: atlastin GTPase 2
RGD ID: 1305125
Description: Predicted to enable GTP binding activity and GTPase-dependent fusogenic activity. Predicted to be involved in endoplasmic reticulum membrane fusion; endoplasmic reticulum tubular network membrane organization; and protein homooligomerization. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum tubular network membrane. Orthologous to human ATL2 (atlastin GTPase 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ADP-ribosylation factor-like 6 interacting protein 2; Arl6ip2; atlastin-2; LOC298757
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,891,220 - 20,932,644 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl620,891,227 - 20,933,320 (+)EnsemblGRCr8
mRatBN7.2615,139,071 - 15,180,421 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl615,139,044 - 15,180,421 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx615,437,506 - 15,478,862 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,759,677 - 15,801,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0615,255,967 - 15,297,313 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd622,343,399 - 22,384,751 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive621,813,608 - 21,854,959 (+)NCBILyon_Normotensive
Lyon_Hypertensive619,609,304 - 19,650,656 (+)NCBILyon_Hypertensive
F344_StmMcwi618,772,967 - 18,814,370 (+)NCBIF344_StmMcwi
Rnor_6.062,568,975 - 2,610,432 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,568,990 - 2,610,437 (+)Ensemblrn6Rnor6.0
Rnor_5.062,548,610 - 2,590,125 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.462,728,722 - 2,771,082 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera614,809,037 - 14,850,517 (+)NCBICelera
RGSC_v3.162,728,977 - 2,771,107 (-)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
asbestos  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
GSK-J4  (ISO)
hexane  (EXP)
hydrogen cyanide  (ISO)
inulin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18270207   PMID:19665976   PMID:19946888   PMID:27619977  


Genomics

Comparative Map Data
Atl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,891,220 - 20,932,644 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl620,891,227 - 20,933,320 (+)EnsemblGRCr8
mRatBN7.2615,139,071 - 15,180,421 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl615,139,044 - 15,180,421 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx615,437,506 - 15,478,862 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0615,759,677 - 15,801,031 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0615,255,967 - 15,297,313 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd622,343,399 - 22,384,751 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive621,813,608 - 21,854,959 (+)NCBILyon_Normotensive
Lyon_Hypertensive619,609,304 - 19,650,656 (+)NCBILyon_Hypertensive
F344_StmMcwi618,772,967 - 18,814,370 (+)NCBIF344_StmMcwi
Rnor_6.062,568,975 - 2,610,432 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl62,568,990 - 2,610,437 (+)Ensemblrn6Rnor6.0
Rnor_5.062,548,610 - 2,590,125 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.462,728,722 - 2,771,082 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera614,809,037 - 14,850,517 (+)NCBICelera
RGSC_v3.162,728,977 - 2,771,107 (-)NCBI
Cytogenetic Map6q12NCBI
ATL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38238,293,954 - 38,378,584 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl238,293,949 - 38,377,438 (-)Ensemblhg38GRCh38
GRCh37238,521,096 - 38,605,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36238,376,628 - 38,457,919 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34238,434,774 - 38,516,066NCBI
Celera238,362,844 - 38,445,253 (-)NCBICelera
Cytogenetic Map2p22.2-p22.1NCBI
HuRef238,262,225 - 38,345,208 (-)NCBIHuRef
CHM1_1238,451,392 - 38,534,265 (-)NCBICHM1_1
T2T-CHM13v2.0238,300,848 - 38,385,467 (-)NCBIT2T-CHM13v2.0
Atl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391780,155,819 - 80,203,633 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1780,155,819 - 80,203,552 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381779,848,352 - 79,896,204 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1779,848,390 - 79,896,123 (-)Ensemblmm10GRCm38
MGSCv371780,247,732 - 80,295,463 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361779,756,718 - 79,764,456 (-)NCBIMGSCv36mm8
Celera1784,160,361 - 84,207,686 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.3NCBI
Atl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554416,004,209 - 6,034,476 (-)Ensembl
ChiLan1.0NW_0049554416,004,209 - 6,034,484 (-)NCBIChiLan1.0ChiLan1.0
ATL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21288,101,383 - 88,188,043 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A88,105,351 - 88,192,017 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A38,318,803 - 38,405,435 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A39,081,933 - 39,166,310 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A39,083,033 - 39,164,137 (-)EnsemblpanPan2panpan1.1
ATL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11730,437,657 - 30,493,784 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1730,438,777 - 30,493,749 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1730,254,174 - 30,310,057 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01731,092,659 - 31,148,778 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1731,092,421 - 31,148,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11730,315,959 - 30,371,989 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01730,385,725 - 30,441,644 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01730,598,360 - 30,654,735 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629241,473,955 - 41,527,739 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936663164,266 - 193,237 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936663139,448 - 193,231 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3101,957,209 - 102,029,667 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13101,957,189 - 102,029,120 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23108,074,640 - 108,147,104 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11469,020,343 - 69,099,692 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1469,020,944 - 69,100,885 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604542,882,636 - 42,963,026 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473819,836,181 - 19,902,265 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473819,836,771 - 19,902,181 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Atl2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1713,168,565 - 13,210,081 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atl2
317 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:163
Count of miRNA genes:111
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000008988
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
RH103002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.256,176,785 - 6,176,929 (+)MAPPERmRatBN7.2
mRatBN7.2615,180,163 - 15,180,307 (+)MAPPERmRatBN7.2
Rnor_6.062,610,175 - 2,610,318NCBIRnor6.0
Rnor_6.055,813,285 - 5,813,428NCBIRnor6.0
Rnor_5.062,589,868 - 2,590,011UniSTSRnor5.0
Rnor_5.0510,652,436 - 10,652,579UniSTSRnor5.0
RGSC_v3.462,728,836 - 2,728,979UniSTSRGSC3.4
RGSC_v3.455,390,926 - 5,391,069UniSTSRGSC3.4
Celera55,754,477 - 5,754,620UniSTS
Celera614,850,260 - 14,850,403UniSTS
Cytogenetic Map6q11UniSTS
RH131775  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2615,155,557 - 15,155,747 (+)MAPPERmRatBN7.2
Rnor_6.062,585,562 - 2,585,751NCBIRnor6.0
Rnor_5.062,565,255 - 2,565,444UniSTSRnor5.0
RGSC_v3.462,753,403 - 2,753,592UniSTSRGSC3.4
Celera614,825,647 - 14,825,836UniSTS
Cytogenetic Map6q11UniSTS
G43537  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.256,176,814 - 6,176,956 (+)MAPPERmRatBN7.2
mRatBN7.2615,180,192 - 15,180,334 (+)MAPPERmRatBN7.2
Rnor_6.062,610,204 - 2,610,345NCBIRnor6.0
Rnor_6.055,813,314 - 5,813,455NCBIRnor6.0
Rnor_5.062,589,897 - 2,590,038UniSTSRnor5.0
Rnor_5.0510,652,465 - 10,652,606UniSTSRnor5.0
RGSC_v3.462,728,809 - 2,728,950UniSTSRGSC3.4
RGSC_v3.455,390,955 - 5,391,096UniSTSRGSC3.4
Celera55,754,506 - 5,754,647UniSTS
Celera614,850,289 - 14,850,430UniSTS
Cytogenetic Map6q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008988   ⟹   ENSRNOP00000008988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,891,257 - 20,932,639 (+)Ensembl
mRatBN7.2 Ensembl615,139,044 - 15,180,421 (+)Ensembl
Rnor_6.0 Ensembl62,569,013 - 2,610,437 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077543   ⟹   ENSRNOP00000071967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,891,257 - 20,932,639 (+)Ensembl
mRatBN7.2 Ensembl615,139,046 - 15,179,359 (+)Ensembl
Rnor_6.0 Ensembl62,568,990 - 2,609,370 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084673   ⟹   ENSRNOP00000071234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl62,569,013 - 2,609,372 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl62,569,002 - 2,594,799 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134159   ⟹   ENSRNOP00000101185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,891,227 - 20,933,320 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172058   ⟹   ENSRNOP00000106218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl620,891,227 - 20,933,320 (+)Ensembl
RefSeq Acc Id: NM_001100671   ⟹   NP_001094141
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,891,284 - 20,932,644 (+)NCBI
mRatBN7.2615,139,071 - 15,180,421 (+)NCBI
Dahl_SR_JrHsd622,343,399 - 22,384,751 (+)NCBI
Lyon_Normotensive621,813,608 - 21,854,959 (+)NCBI
Lyon_Hypertensive619,609,304 - 19,650,656 (+)NCBI
F344_StmMcwi618,772,967 - 18,814,370 (+)NCBI
Rnor_6.062,569,015 - 2,610,432 (+)NCBI
Rnor_5.062,548,610 - 2,590,125 (+)NCBI
RGSC_v3.462,728,722 - 2,771,082 (-)RGD
Celera614,809,037 - 14,850,517 (+)RGD
Sequence:
RefSeq Acc Id: XM_063261599   ⟹   XP_063117669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,891,220 - 20,932,644 (+)NCBI
RefSeq Acc Id: XM_063261600   ⟹   XP_063117670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8620,891,220 - 20,932,644 (+)NCBI
RefSeq Acc Id: NP_001094141   ⟸   NM_001100671
- UniProtKB: F1LQ09 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008988   ⟸   ENSRNOT00000008988
Ensembl Acc Id: ENSRNOP00000071234   ⟸   ENSRNOT00000084673
Ensembl Acc Id: ENSRNOP00000071967   ⟸   ENSRNOT00000077543
RefSeq Acc Id: XP_063117669   ⟸   XM_063261599
- Peptide Label: isoform X1
- UniProtKB: F1LQ09 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117670   ⟸   XM_063261600
- Peptide Label: isoform X2
- UniProtKB: F1LQ09 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101185   ⟸   ENSRNOT00000134159
Ensembl Acc Id: ENSRNOP00000106218   ⟸   ENSRNOT00000172058

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LQ09-F1-model_v2 AlphaFold F1LQ09 1-583 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694381
Promoter ID:EPDNEW_R4887
Type:initiation region
Name:Atl2_1
Description:atlastin GTPase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.062,569,003 - 2,569,063EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305125 AgrOrtholog
BioCyc Gene G2FUF-38515 BioCyc
Ensembl Genes ENSRNOG00000006523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008988.6 UniProtKB/TrEMBL
  ENSRNOT00000077543 ENTREZGENE
  ENSRNOT00000077543.3 UniProtKB/TrEMBL
  ENSRNOT00000134159.1 UniProtKB/TrEMBL
  ENSRNOT00000172058 ENTREZGENE
  ENSRNOT00000172058.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  AHSP UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7319396 IMAGE-MGC_LOAD
InterPro G_GB1_RHD3_dom UniProtKB/TrEMBL
  Guanylate-bd_C_sf UniProtKB/TrEMBL
  Guanylate-bd_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:298757 UniProtKB/TrEMBL
MGC_CLONE MGC:109431 IMAGE-MGC_LOAD
NCBI Gene 298757 ENTREZGENE
PANTHER GUANYLATE BINDING PROTEIN UniProtKB/TrEMBL
Pfam GBP UniProtKB/TrEMBL
PhenoGen Atl2 PhenoGen
PROSITE G_GB1_RHD3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006523 RatGTEx
Superfamily-SCOP GBP UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JZY7_RAT UniProtKB/TrEMBL
  A0ABK0L7Q4_RAT UniProtKB/TrEMBL
  A0ABK0L9C7_RAT UniProtKB/TrEMBL
  F1LQ09 ENTREZGENE, UniProtKB/TrEMBL
  Q562A0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Atl2  atlastin GTPase 2  Arl6ip2  ADP-ribosylation factor-like 6 interacting protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Arl6ip2  ADP-ribosylation factor-like 6 interacting protein 2  Arl6ip2_predicted  ADP-ribosylation factor-like 6 interacting protein 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Arl6ip2_predicted  ADP-ribosylation factor-like 6 interacting protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED