Stom (stomatin) - Rat Genome Database

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Gene: Stom (stomatin) Rattus norvegicus
Analyze
Symbol: Stom
Name: stomatin
RGD ID: 1305109
Description: Predicted to enable RNA polymerase binding activity; ion channel inhibitor activity; and protein homodimerization activity. Predicted to be involved in several processes, including host-mediated activation of viral genome replication; positive regulation of protein targeting to membrane; and positive regulation of viral process. Predicted to be located in several cellular components, including membrane raft; mitochondrion; and perinuclear region of cytoplasm. Predicted to be active in plasma membrane. Orthologous to human STOM (stomatin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: erythrocyte band 7 integral membrane protein; LOC296655
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8339,042,503 - 39,064,818 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl339,042,503 - 39,064,818 (-)EnsemblGRCr8
mRatBN7.2318,645,058 - 18,667,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,644,378 - 18,667,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx321,717,201 - 21,739,375 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0330,302,237 - 30,324,408 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0328,556,109 - 28,578,285 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0314,515,576 - 14,538,199 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,514,868 - 14,538,241 (-)Ensemblrn6Rnor6.0
Rnor_5.0319,833,117 - 19,855,740 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4314,392,978 - 14,415,288 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera313,358,166 - 13,380,297 (-)NCBICelera
RGSC_v3.1314,289,349 - 14,311,660 (-)NCBI
Cytogenetic Map3p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
actinomycin D  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzene  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dichromium trioxide  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
genistein  (EXP)
gentamycin  (EXP)
glycidyl methacrylate  (ISO)
GSK-J4  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
medroxyprogesterone acetate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury(1+)  (EXP)
methylseleninic acid  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
naled  (ISO)
nitrates  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
sotorasib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
trametinib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytoskeleton  (IEA,ISO)
endoplasmic reticulum  (IEA,ISO)
membrane  (IEA)
membrane raft  (IEA,ISO)
mitochondrion  (IEA,ISO)
perinuclear region of cytoplasm  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Association of stomatin (band 7.2b) with Glut1 glucose transporter. Zhang JZ, etal., Arch Biochem Biophys. 1999 Dec 1;372(1):173-8.
Additional References at PubMed
PMID:1547348   PMID:9642292   PMID:12130500   PMID:12477932   PMID:16502470   PMID:19056867   PMID:19190083   PMID:19946888   PMID:21362503   PMID:22516433   PMID:22850675   PMID:23376485  
PMID:23533145   PMID:25262680   PMID:32012213  


Genomics

Comparative Map Data
Stom
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8339,042,503 - 39,064,818 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl339,042,503 - 39,064,818 (-)EnsemblGRCr8
mRatBN7.2318,645,058 - 18,667,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl318,644,378 - 18,667,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx321,717,201 - 21,739,375 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0330,302,237 - 30,324,408 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0328,556,109 - 28,578,285 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0314,515,576 - 14,538,199 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,514,868 - 14,538,241 (-)Ensemblrn6Rnor6.0
Rnor_5.0319,833,117 - 19,855,740 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4314,392,978 - 14,415,288 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera313,358,166 - 13,380,297 (-)NCBICelera
RGSC_v3.1314,289,349 - 14,311,660 (-)NCBI
Cytogenetic Map3p11NCBI
STOM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389121,338,987 - 121,370,250 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9121,338,987 - 121,370,304 (-)Ensemblhg38GRCh38
GRCh379124,101,265 - 124,132,528 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369123,141,174 - 123,172,366 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349121,180,910 - 121,212,099NCBI
Celera994,749,842 - 94,781,033 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef993,719,010 - 93,750,325 (-)NCBIHuRef
CHM1_19124,248,150 - 124,279,466 (-)NCBICHM1_1
T2T-CHM13v2.09133,534,978 - 133,566,240 (-)NCBIT2T-CHM13v2.0
Stom
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39235,204,002 - 35,227,021 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl235,203,998 - 35,226,988 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38235,313,990 - 35,337,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl235,313,986 - 35,336,976 (-)Ensemblmm10GRCm38
MGSCv37235,169,510 - 35,192,529 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36235,135,999 - 35,159,018 (-)NCBIMGSCv36mm8
Celera235,008,711 - 35,031,730 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map223.53NCBI
Stom
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554196,643,012 - 6,675,513 (+)Ensembl
ChiLan1.0NW_0049554196,642,807 - 6,673,407 (+)NCBIChiLan1.0ChiLan1.0
STOM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,972,829 - 18,005,564 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1917,976,234 - 18,007,916 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0992,466,718 - 92,498,265 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19120,812,065 - 120,843,497 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,812,065 - 120,843,497 (-)EnsemblpanPan2panpan1.1
STOM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11174,270,409 - 74,284,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1174,270,409 - 74,284,670 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1172,681,251 - 72,707,208 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01175,407,981 - 75,434,168 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1175,407,981 - 75,434,546 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11173,914,858 - 73,940,571 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,945,746 - 73,971,919 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,685,417 - 74,711,398 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stom
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947190,040,059 - 190,069,001 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364879,808,194 - 9,837,530 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364879,808,586 - 9,837,506 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1261,380,090 - 261,407,713 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11261,380,087 - 261,407,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21293,511,501 - 293,528,583 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STOM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,214,816 - 18,246,730 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1218,214,928 - 18,244,595 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603524,771,045 - 24,802,981 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stom
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476013,906,376 - 13,936,284 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476013,906,430 - 13,936,284 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Stom
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15302,515 - 324,939 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stom
178 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:315
Count of miRNA genes:180
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000025904
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
11528620Bss113Bone structure and strength QTL 1139.752e-10femur morphology trait (VT:0000559)femoral neck width (CMO:0001695)33688834239639105Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH132834  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8339,042,587 - 39,042,784 (+)Marker Load Pipeline
mRatBN7.2318,645,142 - 18,645,339 (+)MAPPERmRatBN7.2
Rnor_6.0314,515,661 - 14,515,857NCBIRnor6.0
Rnor_5.0319,833,202 - 19,833,398UniSTSRnor5.0
RGSC_v3.4314,393,063 - 14,393,259UniSTSRGSC3.4
Celera313,358,251 - 13,358,447UniSTS
Cytogenetic Map3p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000025904   ⟹   ENSRNOP00000025904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl339,042,503 - 39,064,818 (-)Ensembl
mRatBN7.2 Ensembl318,644,378 - 18,667,354 (-)Ensembl
Rnor_6.0 Ensembl314,514,868 - 14,538,241 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096823   ⟹   ENSRNOP00000083562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl339,042,503 - 39,058,128 (-)Ensembl
mRatBN7.2 Ensembl318,644,378 - 18,667,067 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112443   ⟹   ENSRNOP00000082961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl339,042,503 - 39,054,394 (-)Ensembl
mRatBN7.2 Ensembl318,644,378 - 18,656,922 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112692   ⟹   ENSRNOP00000078219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl318,644,378 - 18,661,047 (-)Ensembl
RefSeq Acc Id: NM_001011965   ⟹   NP_001011965
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8339,042,503 - 39,064,818 (-)NCBI
mRatBN7.2318,645,058 - 18,667,343 (-)NCBI
Rnor_6.0314,515,576 - 14,538,199 (-)NCBI
Rnor_5.0319,833,117 - 19,855,740 (-)NCBI
RGSC_v3.4314,392,978 - 14,415,288 (-)RGD
Celera313,358,166 - 13,380,297 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001011965 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83895 (Get FASTA)   NCBI Sequence Viewer  
  EDL93146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025904
  ENSRNOP00000025904.4
  ENSRNOP00000082961.1
  ENSRNOP00000083562.2
RefSeq Acc Id: NP_001011965   ⟸   NM_001011965
- UniProtKB: Q5XI04 (UniProtKB/TrEMBL),   F7EZ18 (UniProtKB/TrEMBL),   A0A8I5ZV26 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025904   ⟸   ENSRNOT00000025904
Ensembl Acc Id: ENSRNOP00000083562   ⟸   ENSRNOT00000096823
Ensembl Acc Id: ENSRNOP00000078219   ⟸   ENSRNOT00000112692
Ensembl Acc Id: ENSRNOP00000082961   ⟸   ENSRNOT00000112443
Protein Domains
Band

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI04-F1-model_v2 AlphaFold Q5XI04 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692018
Promoter ID:EPDNEW_R2542
Type:multiple initiation site
Name:Stom_1
Description:stomatin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0314,538,221 - 14,538,281EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305109 AgrOrtholog
BioCyc Gene G2FUF-50056 BioCyc
Ensembl Genes ENSRNOG00000019147 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025904 ENTREZGENE
  ENSRNOT00000025904.8 UniProtKB/TrEMBL
  ENSRNOT00000096823.2 UniProtKB/TrEMBL
  ENSRNOT00000112443.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.479.30 UniProtKB/TrEMBL
  6.10.250.2090 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7132959 IMAGE-MGC_LOAD
InterPro Band-7_stomatin-like UniProtKB/TrEMBL
  Band_7 UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/TrEMBL
  Band_7/stomatin-like_CS UniProtKB/TrEMBL
  Stomatin UniProtKB/TrEMBL
KEGG Report rno:296655 UniProtKB/TrEMBL
MGC_CLONE MGC:95236 IMAGE-MGC_LOAD
NCBI Gene 296655 ENTREZGENE
PANTHER PTHR10264 UniProtKB/TrEMBL
  PTHR10264:SF115 UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/TrEMBL
PhenoGen Stom PhenoGen
PRINTS STOMATIN UniProtKB/TrEMBL
PROSITE BAND_7 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019147 RatGTEx
SMART PHB UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/TrEMBL
UniProt A0A8I5ZV26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GAW8_RAT UniProtKB/TrEMBL
  F7EZ18 ENTREZGENE, UniProtKB/TrEMBL
  Q5XI04 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Stom  stomatin  Stom_predicted  stomatin (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Stom_predicted  stomatin (predicted)      Symbol and Name status set to approved 70820 APPROVED