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Gene: Smyd1 (SET and MYND domain containing 1) Rattus norvegicus

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Symbol:

Smyd1

Name:

SET and MYND domain containing 1

RGD ID:

1305105

Description:

Predicted to enable histone H3K4 methyltransferase activity and transcription corepressor activity. Predicted to be involved in heart development; negative regulation of DNA-templated transcription; and positive regulation of cell differentiation. Predicted to act upstream of or within chromatin remodeling and skeletal muscle cell differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SMYD1 (SET and MYND domain containing 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

histone-lysine N-methyltransferase SMYD1; LOC297333; SET and MYND domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SMYD1 (SET and MYND domain containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Smyd1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Smyd1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SMYD1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SMYD1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Smyd1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SMYD1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SMYD1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Smyd1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Smyd1 (SET and MYND domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NACC1 (nucleus accumbens associated 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SMYD1 (SET and MYND domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Smyd1 (SET and MYND domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	smyd1a (SET and MYND domain containing 1a)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	smyd1a (SET and MYND domain containing 1a)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	smyd1b (SET and MYND domain containing 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Smyd3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Smyd3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	set-14	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	set-14	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	set-18	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	set-18	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	SET6	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	SET5	Alliance	DIOPT (InParanoid\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	smyd1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	smyd1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	104,757,281 - 104,811,307 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	104,760,475 - 104,870,081 (-)	Ensembl				GRCr8
mRatBN7.2	4	103,195,330 - 103,252,989 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,200,322 - 103,311,766 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	108,590,805 - 108,642,610 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	104,365,906 - 104,417,714 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	102,972,276 - 103,022,881 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	106,268,321 - 106,320,343 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	103,951,861 - 104,003,877 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	104,469,528 - 104,521,544 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	104,308,761 - 104,360,148 (-)	NCBI		F344_StmMcwi
Rnor_6.0	4	99,071,122 - 99,125,143 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,074,535 - 99,125,111 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	163,848,270 - 163,904,185 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	104,423,556 - 104,475,134 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	92,378,302 - 92,428,867 (-)	NCBI		Celera
RGSC_v3.1	4	104,664,623 - 104,728,216 (-)	NCBI
Cytogenetic Map	4	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aldehydo-D-glucose (ISO)

alpha-Zearalanol (EXP)

benzo[a]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cantharidin (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

D-glucose (ISO)

decabromodiphenyl ether (EXP)

doxorubicin (ISO)

doxycycline (ISO)

folic acid (ISO)

gentamycin (EXP)

glucose (ISO)

hypochlorous acid (ISO)

isoprenaline (ISO)

L-methionine (ISO)

methimazole (EXP)

Moniliformin (ISO)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

propiconazole (ISO)

rotenone (EXP)

spermine (ISO)

sulforaphane (ISO)

sunitinib (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

triclosan (ISO)

Triptolide (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

chromatin remodeling (IEA,ISO)

DNA-templated transcription (IEA)

heart development (IBA,ISO)

methylation (IEA)

negative regulation of DNA-templated transcription (IBA,ISO)

positive regulation of myoblast differentiation (IEA,ISO)

positive regulation of myotube differentiation (IEA,ISO)

skeletal muscle cell differentiation (ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

DNA binding (IEA)

histone H3K4 methyltransferase activity (IBA,IEA)

histone H3K4 trimethyltransferase activity (IEA)

metal ion binding (IEA)

methyltransferase activity (IEA)

protein binding (ISO)

transcription corepressor activity (IEA,ISO)

transferase activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Histone lysine methylation dynamics: establishment, regulation, and biological impact.	Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Molecular mechanisms of ventricular hypoplasia.	Srivastava D, etal., Cold Spring Harb Symp Quant Biol. 2002;67:121-5.

Additional References at PubMed

PMID:11923873	PMID:19783823	PMID:22147266	PMID:27663768	PMID:31904090	PMID:32977624

Genomics

Comparative Map Data

Smyd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	104,757,281 - 104,811,307 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	104,760,475 - 104,870,081 (-)	Ensembl				GRCr8
mRatBN7.2	4	103,195,330 - 103,252,989 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	103,200,322 - 103,311,766 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	108,590,805 - 108,642,610 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	104,365,906 - 104,417,714 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	102,972,276 - 103,022,881 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	106,268,321 - 106,320,343 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	103,951,861 - 104,003,877 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	104,469,528 - 104,521,544 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	104,308,761 - 104,360,148 (-)	NCBI		F344_StmMcwi
Rnor_6.0	4	99,071,122 - 99,125,143 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	99,074,535 - 99,125,111 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	163,848,270 - 163,904,185 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	104,423,556 - 104,475,134 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	92,378,302 - 92,428,867 (-)	NCBI		Celera
RGSC_v3.1	4	104,664,623 - 104,728,216 (-)	NCBI
Cytogenetic Map	4	q32	NCBI

SMYD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	88,067,825 - 88,113,384 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	88,067,773 - 88,113,384 (+)	Ensembl			hg38	GRCh38
GRCh37	2	88,367,344 - 88,412,903 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	88,148,497 - 88,194,018 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	88,373,097 - 88,418,568 (-)	NCBI		Celera
Cytogenetic Map	2	p11.2	NCBI
HuRef	2	87,289,577 - 87,335,154 (+)	NCBI		HuRef
CHM1_1	2	88,296,599 - 88,342,189 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	88,079,089 - 88,124,637 (+)	NCBI		T2T-CHM13v2.0

Smyd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	71,190,924 - 71,239,265 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	71,190,924 - 71,299,217 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	71,213,940 - 71,262,281 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	71,213,940 - 71,322,233 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	71,163,934 - 71,212,275 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	71,144,757 - 71,191,832 (-)	NCBI		MGSCv36	mm8
Celera	6	73,293,207 - 73,341,506 (-)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	32.14	NCBI

Smyd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	769,287 - 800,885 (-)	Ensembl
ChiLan1.0	NW_004955424	769,287 - 800,646 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMYD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	39,189,326 - 39,234,524 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	39,192,086 - 39,237,284 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	87,201,207 - 87,246,416 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	89,109,444 - 89,155,797 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	89,108,642 - 89,155,797 (+)	Ensembl			panPan2	panpan1.1

SMYD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	38,260,897 - 38,298,248 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	38,259,624 - 38,298,183 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	37,945,978 - 37,983,287 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	38,993,154 - 39,030,296 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	38,991,672 - 39,030,254 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	38,160,034 - 38,197,325 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	38,196,046 - 38,233,224 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	38,544,368 - 38,581,633 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Smyd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	80,077,527 - 80,110,874 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936712	747,841 - 780,517 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936712	747,060 - 781,142 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMYD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	57,867,250 - 57,918,568 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	57,866,078 - 57,918,576 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	60,559,524 - 60,607,410 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMYD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	18,676,396 - 18,721,532 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	18,676,394 - 18,720,903 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666080	1,054,806 - 1,098,662 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smyd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	16,399,346 - 16,432,887 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	16,400,037 - 16,432,956 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Smyd1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	74,229,276 - 74,277,852 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Smyd1
412 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	345
Count of miRNA genes:	205
Interacting mature miRNAs:	247
Transcripts:	ENSRNOT00000009184
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	62	107	76	75	44	31	44	6	271	126	11	83	79	73	31	8	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009184 ⟹ ENSRNOP00000009184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	104,760,694 - 104,811,272 (-)	Ensembl
mRatBN7.2 Ensembl	4	103,200,322 - 103,252,952 (-)	Ensembl
Rnor_6.0 Ensembl	4	99,074,535 - 99,125,111 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093960 ⟹ ENSRNOP00000097130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	104,760,694 - 104,870,081 (-)	Ensembl
mRatBN7.2 Ensembl	4	103,200,322 - 103,311,766 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094006 ⟹ ENSRNOP00000077690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	104,760,694 - 104,816,652 (-)	Ensembl
mRatBN7.2 Ensembl	4	103,200,322 - 103,253,004 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097634 ⟹ ENSRNOP00000093849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	104,760,694 - 104,816,652 (-)	Ensembl
mRatBN7.2 Ensembl	4	103,200,322 - 103,252,952 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119454 ⟹ ENSRNOP00000086450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	104,760,694 - 104,811,272 (-)	Ensembl
mRatBN7.2 Ensembl	4	103,202,808 - 103,253,018 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128930 ⟹ ENSRNOP00000101538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	104,760,475 - 104,819,841 (-)	Ensembl

RefSeq Acc Id:

NM_001106595 ⟹ NP_001100065

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	104,760,694 - 104,811,272 (-)	NCBI
mRatBN7.2	4	103,202,369 - 103,252,956 (-)	NCBI
Dahl_SR_JrHsd	4	106,268,321 - 106,320,343 (-)	NCBI
Lyon_Normotensive	4	103,951,861 - 104,003,877 (-)	NCBI
Lyon_Hypertensive	4	104,469,528 - 104,521,544 (-)	NCBI
F344_StmMcwi	4	104,308,761 - 104,360,148 (-)	NCBI
Rnor_6.0	4	99,074,535 - 99,125,111 (-)	NCBI
Rnor_5.0	4	163,848,270 - 163,904,185 (-)	NCBI
RGSC_v3.4	4	104,423,556 - 104,475,134 (-)	RGD
Celera	4	92,378,302 - 92,428,867 (-)	RGD

Sequence:

show sequence

GCTTGGCTCAGTGTGAGCGAACCACCCTGGGGGCCTGACAGACTCTGAGATGACAGTAGGCAGC
ATGGAGAATGTGGAGGTCTTTACTTCCGAGGGCAAAGGCAGAGGACTGAAGGCCACGAAGGAGT
TCTGGGCTGCGGATGTCATCTTTGCTGAGAGGGCTTATTCGGCAGTGGTTTTTGACAGCCTCAT
TAACTTCGTGTGCCACACCTGCTTCAAGAGGCAGGAGAGGCTCCATCGCTGCGGGCAATGCAAG
TTCGCCCATTACTGCGACCGCACATGCCAGAAGGATGCCTGGCTGAACCACAAGAACGAGTGCT
CTGCCATCAAGAGATACGGGAAGGTGCCCAACGAAAATATCAGGCTGGCAGCCCGCATCATGTG
GCGGGTGGAGAGAGAGGGCACTGGACTCACAGAGGGCTGCCTGGTGTCAGTGGATGACTTACAG
AACCATGTGGAGCACTTTGGGGAGGAGGAGCAGAAGGAACTACGAGTAGACGTGGATACATTCT
TGCAGTACTGGCCACCACAGAGCCAGCAGTTCAGCATGCAGTACATCTCACACATCTTTGGCGT
GATCAACTGCAATGGTTTCACACTCAGTGACCAGAGAGGGCTACAGGCAGTGGGCGTGGGCATC
TTCCCCAACCTGGGCCTGGTGAACCATGACTGCTGGCCAAACTGCACTGTCATATTCAACAATG
GCAATCATGAGGCGGTGAAATCCATGTTTCACACGCAGATGAGGATTGAGCTCCGGGCCCTGGG
CAAGATCTCAGAAGGTGAGGAGCTGACGGTGTCCTACATAGACTTCCTCCACCTCAGCGAGGAG
CGCAGGCAGCAGCTGAAGAAGCAGTACTACTTTGACTGCTCCTGTGAACACTGCCAGAAGGGGC
TGAAGGACGACCTCTTCCTGGCAGTGAAGGAAGACCCCAAGCCCTCCCAGGAGGTGGTGAAGGA
GATGACACAATTCTCAAAGGATACACTGGAAAAAATAGACAAGGCTCGCTCTGAGGGTTTGTAT
CACGAGGTTGTGAAGCTGTGTCGGGAGTGCCTGGAGAAGCAGGAACCAGTGTTTGCTGACACCA
ACCTCTACGTGCTTCGGTTGCTAAGCATTGTGTCAGAAGTCCTCTCCTACCTCCAGGCCTTTGA
AGAGGCCTCCCATTATGCCAGGAGGATGGTGGATGGCTACATGAAACTCTACCACCATAACAAT
GCCCAACTGGGCATGGCTGTGATGCGGGCAGGGCTGACCAACTGGCATGCTGGTCACATTGAAG
TAGGGCACGGGATGATCTGCAAAGCCTATGCTATTCTCCTGGTGACCCATGGACCCTCCCACCC
TATCACCAAAGACTTAGAGGCCATGCGGATGCAGACAGAGATGGAGCTGCGTATGTTCCGCCAA
AATGAATTCATGTACCACAAAATGCGAGAGGCTGCCCTGAACAACCAGCCCATGCAGGTCATGG
CTGAGCCCAGCAACGAGCCAGCCCCAGCTCTGTTCCATAAGAAGCAATGAGGACCTTGTTGGAG
GGTGGGGGCATTGTGGCTGCGGAGCTGAGGAAATTACTACTCTGTGTCCCCCACCGCCATTTTG
GTTCAATTCAACTCAGCTTAGTTCTCTCTCATTTCAGACCAACTCTTTCTCTATGTGTCGGGTG
CTAGATTCCACCGTCTATTTAACAAGGAAGCCCCAAATATACTTCGGCTAGAAAGAAAAATGTA
AACAAACAAGGTACAGCATAATAGTAAATGCCACGGTGCACTCTATGGAGAGGGGTTCAGAGGA
GGTGAGTGTGTGTGAGTGAGTGAGTGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTAAAACACCTGAGCTAAGAGTGGCAGGTACCTAGAATCTCAGGTGGCTGCTT
GTTTCTTTGTGCAGGGGTCTCTGGGGCTGCTGGTTTCATCTACAGTTACGAACATTTAGGGTTC
TGCAGACTGGGATGGGTGATGATGACCTGTATCCTGAGGCTGGGACTGTTCTTGGCCCTTTGAG
ATCTACTCAATGGTGCCTAGAAAGAGGTAGGGATCTTGGGATCCTGTGGTCTTAATTTCCTAAT
CCAAGTTGAAGCATACTTTTAGAATAACTCTAGA

hide sequence

RefSeq Acc Id:

XM_006236632 ⟹ XP_006236694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	104,757,281 - 104,811,296 (-)	NCBI
mRatBN7.2	4	103,195,330 - 103,252,973 (-)	NCBI
Rnor_6.0	4	99,071,122 - 99,125,142 (-)	NCBI
Rnor_5.0	4	163,848,270 - 163,904,185 (-)	NCBI

Sequence:

show sequence

TGAAGGAGCTAAATATCTGCTGTGACAAGAGGCTTGGCTCAGTGTGAGCGAACCACCCTGGGGG
CCTGACAGACTCTGAGATGACAGTAGGCAGCATGGAGAATGTGGAGGTCTTTACTTCCGAGGGC
AAAGGCAGAGGACTGAAGGCCACGAAGGAGTTCTGGGCTGCGGATGTCATCTTTGCTGAGAGGG
CTTATTCGGCAGTGGTTTTTGACAGCCTCATTAACTTCGTGTGCCACACCTGCTTCAAGAGGCA
GGAGAGGCTCCATCGCTGCGGGCAATGCAAGTTCGCCCATTACTGCGACCGCACATGCCAGAAG
GATGCCTGGCTGAACCACAAGAACGAGTGCTCTGCCATCAAGAGATACGGGAAGGTGCCCAACG
AAAATATCAGGCTGGCAGCCCGCATCATGTGGCGGGTGGAGAGAGAGGGCACTGGACTCACAGA
GGGCTGCCTGGTGTCAGTGGATGACTTACAGAACCATGTGGAGCACTTTGGGGAGGAGGAGCAG
AAGGAACTACGAGTAGACGTGGATACATTCTTGCAGTACTGGCCACCACAGAGCCAGCAGTTCA
GCATGCAGTACATCTCACACATCTTTGGCGTGATCAACTGCAATGGTTTCACACTCAGTGACCA
GAGAGGGCTACAGGCAGTGGGCGTGGGCATCTTCCCCAACCTGGGCCTGGTGAACCATGACTGC
TGGCCAAACTGCACTGTCATATTCAACAATGGCAAGATTGAGCTCCGGGCCCTGGGCAAGATCT
CAGAAGGTGAGGAGCTGACGGTGTCCTACATAGACTTCCTCCACCTCAGCGAGGAGCGCAGGCA
GCAGCTGAAGAAGCAGTACTACTTTGACTGCTCCTGTGAACACTGCCAGAAGGGGCTGAAGGAC
GACCTCTTCCTGGCAGTGAAGGAAGACCCCAAGCCCTCCCAGGAGGTGGTGAAGGAGATGACAC
AATTCTCAAAGGATACACTGGAAAAAATAGACAAGGCTCGCTCTGAGGGTTTGTATCACGAGGT
TGTGAAGCTGTGTCGGGAGTGCCTGGAGAAGCAGGAACCAGTGTTTGCTGACACCAACCTCTAC
GTGCTTCGGTTGCTAAGCATTGTGTCAGAAGTCCTCTCCTACCTCCAGGCCTTTGAAGAGGCCT
CCCATTATGCCAGGAGGATGGTGGATGGCTACATGAAACTCTACCACCATAACAATGCCCAACT
GGGCATGGCTGTGATGCGGGCAGGGCTGACCAACTGGCATGCTGGTCACATTGAAGTAGGGCAC
GGGATGATCTGCAAAGCCTATGCTATTCTCCTGGTGACCCATGGACCCTCCCACCCTATCACCA
AAGACTTAGAGGCCATGCGGATGCAGACAGAGATGGAGCTGCGTATGTTCCGCCAAAATGAATT
CATGTACCACAAAATGCGAGAGGCTGCCCTGAACAACCAGCCCATGCAGGTCATGGCTGAGCCC
AGCAACGAGCCAGCCCCAGCTCTGTTCCATAAGAAGCAATGAGGACCTTGTTGGAGGGTGGGGG
CATTGTGGCTGCGGAGCTGAGGAAATTACTACTCTGTGTCCCCCACCGCCATTTTGGTTCAATT
CAACTCAGCTTAGTTCTCTCTCATTTCAGACCAACTCTTTCTCTATGTGTCGGGTGCTAGATTC
CACCGTCTATTTAACAAGGAAGCCCCAAATATACTTCGGCTAGAAAGAAAAATGTAAACAAACA
AGGTACAGCATAATAGTAAATGCCACGGTGCACTCTATGGAGAGGGGTTCAGAGGAGGTGAGTG
TGTGTGAGTGAGTGAGTGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTAAAACACCTGAGCTAAGAGTGGCAGGTACCTAGAATCTCAGGTGGCTGCTTGTTTCTTT
GTGCAGGGGTCTCTGGGGCTGCTGGTTTCATCTACAGTTACGAACATTTAGGGTTCTGCAGACT
GGGATGGGTGATGATGACCTGTATCCTGAGGCTGGGACTGTTCTTGGCCCTTTGAGATCTACTC
AATGGTGCCTAGAAAGAGGTAGGGATCTTGGGATCCTGTGGTCTTAATTTCCTAATCCAAGTTG
AAGCATACTTTTAGAATAACTCTAGAACACACAGAGAAGGAATTTTTCCCTTCCTGGTCCTACC
CACCAAGTCTGTATCTCCTTGTGATGTTGAAGGAAAGCTGAGGTTTTCCTGGCCATTGACTTGT
AGGAGTAGGGAAGGCTTTTCAGGGTAAAGCTGACGGTGTGTGTGCCTGGCAATGACGGACCCTC
AGAAGCAGTGTGTAGGGGTTTTGATACTCAGCAGTCTGCCTCAGCCTAGGCTTCATCATTGGCC
TGATGAGGCTCTACCCATCATATCGAGTGAATGACAGTTCCTCTGCTTGATGCCTTTATCCTGT
CTGTGCTCTGGGGGCTTCTGCCCTTAGGAGAAGGCAGTCCACACGACCTAGGAACTCATCATAA
GTGTGACCAGTTTGTTCTCCTTTGCTTAGAGGCTGACTTCTGACTGAGAGATGAAGGTCCCAGA
ATGGCCTTTTAGTTTCTGGAATTCCAACTTTCTCACCAACATGGAGGGAGACCATGAAGTAAAT
TCCTTTAGTAGAAGGAAAACTTCTACGAAGCCTTGTGCTATCACTGACCCCAGACCTCTAACAC
CTTGAAGTCCTATGGTTCCCACTAAACTGCAATCTGTCTAAAGTGTTAGTTCCTCTGTCCCCAA
CCTGTCATCCCAGAATAGTACCCTGCCTGCCCTTGAGCCCTGCCCTGCGGCTGAGGCCTGGGAT
GTGAGCACCTCTTTGTGGAATATTAGCACTGACCCTTGGTTCTTTTTGAGGGTTAGTTCTTCTC
TAGAAACTTCTATGAAGACTGACAGTTGTTTCAGGCTTAGAGACAACACCAACAATCCCCTTAA
GAATCGTGCCAGTGACTCTGAGTCACCATTCTTCTTCCCACAGAGACCCTGCTCCAGACCCGGT
CATTTTTTGTCATAGTTGTCTGCCCACCTTGTCCATTATTGCTTCTCATCTTCCTACAACCTGT
TTCTTCAGAATGGATCACTGTGTGTTCCTCCACCTTTCTCAGAACCGTAGACTGGGGTCCCCTT
CTCAGAGCTATCCTGTCGGCTGTGGTCCCCCTCTCTCACTAGCCACCCTCTGTTCCTGCTCTGG
GCCTCTTGCTTTCCAGTGCCTTCCAGACCTTACTCCATTATCACCCTTTCCATCCAAGGCCTTG
CCATCCTCCCCCGACTAGGCTTCTTATCTTTTTCTTTCTTTCTCCCTCCCCTCTTAGTTTTTTA
AGACAGGGTCTCTCTACTTCGCCCTGGATGTCCTGGAACTCACTCTATAGACTGGGTTGGTCTC
GAACTCACAGAGGTCTGCCTGCCTCTGCCATGAGAGTCCTGGGAGTATAGCCACTCACTACCAC
TGCCTGGCACCACTGGCCTTCTTTAATGACGCCAATTAGCATGCCAAGGACCCTTGGATCGCCA
CCTTCACAGCTGGAGTTCTCTTCAGACTTTTCAATCTGTCTCCCCTCTCTTCCCATTTCTTCCC
TAACCCACTGCACACCGCCTTCCATGTTTGCCTCTCCATTGAAACGACTCCTTTCTAGTTCCGT
ACGCTAGCCAGCTTCCCTGTGTAATACAGCCCAAGCTTGGTTTCTGTGACTCGGTTTCTTTGTG
ATGAGCCTCTGATGTGGTCTCTCTGGCTTTCACTGGTCTTGTTTCTCCACCTGACCCTGATACG
CTGAAATGTCCCTGAGTTGACTTTGTCCTTGGTTAATTCTATTCTTGTTCTGCACACTCCTAGC
GTGAATTTAGGTGACATTTTATGTAACGACTACATTGAGGCTTCTGGTTCTCAGGTTTGTTATC
TGATCTTACATCTTGAGCTCCAGCCCCTCACATCTTCCCGGGCGCTCTGCAGGTGCATCAAAGT
CAGTATGCTCCATGAGACCCCAGTATGAGGTCTCCTAACACTTTGTCATTCTCAGAACAGCACC
CAAGATACCACACCCTCCATCATGTTGTGGGCTCCTGAGAGCAGGGCCACATTCCTTCATTCAT
CTTCCTGTCTCTAGAATAGATCCTGGAACACAGTAGGTGCTCAATTAGTGTAAATTGAGTGAAT
AAATGAAGGACATGTTTATCTCAAAGTTAAGAGATGCACAACTGTATATTTGAGTATCTTATGT
TATAGCACTCAGCAAAGTCCAGCAAACCATCTCTGGATATGGGACTTTCTTTCTGATAGTCTTT
CCAGAGAAGCTTGATGCTATGGAATTTCCTGTGGTGATAGGGAGGGCTTTCATCTGCGAGGTCC
AGTTTAGTAGTCATCAACAGCATGTGACGACTGAGACTAGAAACAGCTTAAGGACATGAAAATG
TTATTTTATTTAGTTTCAATTCATTTAAGTCTAACTAGGCAAGATGGCCAGTGGCTGCTAAATT
AAACTATAATTTAATTAATTGTTTTAAAGAGCAGTTTCTTCATAGCTATCCTGATACCACACTG
TTACCTTCTTCCTGCCTCAGTTTCCTCAACTCTCCCTCTGCCTAAGTTGGCAGCTGAGTTTTTA
CACTTGATCTTAGCCAAAAGGCCGAGAAGCGATTGCAGCTGAGTTTTTAAAAGGCTTATCTTAT
ACAGACTGTAGGATAACACCAGACCCCAGCAGCGTTTAAAGAGAACTCGTTAGTGTTACACTGG
TTGAGACCACATTTCTCCTGGGGTTTCCATTTTTCTCATTAGAAAGGTAAGGGGTGAGTTGTGG
TGGGTTGCGATGGACTGAAACTGACTTTATCTGCTTTGTGGGCCAACTGTGCACAGGTCTGCCC
AGCATCCTGCTCACTGATTGGTAACTTGCAGTTGGCCCTAATAGGACTGTGAAGACCATACTCA
GTGTCTTACGCTTAGAACACGTATATAAACTTACAAAAAGGGAGCAACAGAGTGGATCCTTAGA
ATGTTAAAGGAGTCTTGGCTTAACTGGAGACTGTACTTGCAAACCTTTATCCCCGAGAGCCACA
GTAAACATGCTTAAGAGTCCTACACACCGGGGTTGGGGATTTAGCTCAGCAGTAGAGCACTTGC
CTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAACTCCGAAAAAAAGAAAAAAGAAAAAAAGAA
AAAAAAAAAGAGTCCTACACACCAACCGCACCATGAAGGCATCTGCATCTTCACTAAAATGGGG
TGGCTCTGGTTCCACTAATCAGACATAGTTGTTCCCTGGTGACTCTCTTAGGGACTGCCTCTCT
AAAGATCTGAGGAAGAAAACTATGGCTAGAACTCCACCATGGCCAGAAGGATTTTCCTACAAAG
CACTTTATCTGCAGAGTGTAAACCTGTCATTAAGCACCTGCTGTCTGCTGGGTCAAGTTCAAAC
TCCTTTCCAAAGTCAAAAGATTCTCTGCAGATAACTTGGCTCTGTCTCGGTCTCCTCTCTTGTA
TGCCCTTTCACCTTACCTGCTCACAAAATAAATACCCTTGGATGCTC

hide sequence

RefSeq Acc Id:

XM_017592535 ⟹ XP_017448024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	104,757,281 - 104,811,293 (-)	NCBI
mRatBN7.2	4	103,195,330 - 103,252,989 (-)	NCBI
Rnor_6.0	4	99,071,122 - 99,125,143 (-)	NCBI

Sequence:

show sequence

GTGAAGGAGCTAAATATCTGCTGTGACAAGAGGCTTGGCTCAGTGTGAGCGAACCACCCTGGGG
GCCTGACAGACTCTGAGATGACAGTAGGCAGCATGGAGAATGTGGAGGTCTTTACTTCCGAGGG
CAAAGGCAGAGGACTGAAGGCCACGAAGGAGTTCTGGGCTGCGGATGTCATCTTTGCTGAGAGG
GCTTATTCGGCAGTGGTTTTTGACAGCCTCATTAACTTCGTGTGCCACACCTGCTTCAAGAGGC
AGGAGAGGCTCCATCGCTGCGGGCAATGCAAGTTCGCCCATTACTGCGACCGCACATGCCAGAA
GGATGCCTGGCTGAACCACAAGAACGAGTGCTCTGCCATCAAGAGATACGGGAAGGTGCCCAAC
GAAAATATCAGGCTGGCAGCCCGCATCATGTGGCGGGTGGAGAGAGAGGGCACTGGACTCACAG
AGGGCTGCCTGGTGTCAGTGGATGACTTACAGAACCATGTGGAGCACTTTGGGGAGGAGGAGCA
GAAGGAACTACGAGTAGACGTGGATACATTCTTGCAGTACTGGCCACCACAGAGCCAGCAGTTC
AGCATGCAGTACATCTCACACATCTTTGGCGTGATCAACTGCAATGGTTTCACACTCAGTGACC
AGAGAGGGCTACAGGCAGTGGGCGTGGGCATCTTCCCCAACCTGGGCCTGGTGAACCATGACTG
CTGGCCAAACTGCACTGTCATATTCAACAATGGCAATCATGAGGCGGTGAAATCCATGTTTCAC
ACGCAGATGAGGATTGAGCTCCGGGCCCTGGGCAAGATCTCAGAAGGTGAGGAGCTGACGGTGT
CCTACATAGACTTCCTCCACCTCAGCGAGGAGCGCAGGCAGCAGCTGAAGAAGCAGTACTACTT
TGACTGCTCCTGTGAACACTGCCAGAAGGGGCTGAAGGACGACCTCTTCCTGGCAGTGAAGGAA
GACCCCAAGGTTGTGAAGCTGTGTCGGGAGTGCCTGGAGAAGCAGGAACCAGTGTTTGCTGACA
CCAACCTCTACGTGCTTCGGTTGCTAAGCATTGTGTCAGAAGTCCTCTCCTACCTCCAGGCCTT
TGAAGAGGCCTCCCATTATGCCAGGAGGATGGTGGATGGCTACATGAAACTCTACCACCATAAC
AATGCCCAACTGGGCATGGCTGTGATGCGGGCAGGGCTGACCAACTGGCATGCTGGTCACATTG
AAGTAGGGCACGGGATGATCTGCAAAGCCTATGCTATTCTCCTGGTGACCCATGGACCCTCCCA
CCCTATCACCAAAGACTTAGAGGCCATGCGGATGCAGACAGAGATGGAGCTGCGTATGTTCCGC
CAAAATGAATTCATGTACCACAAAATGCGAGAGGCTGCCCTGAACAACCAGCCCATGCAGGTCA
TGGCTGAGCCCAGCAACGAGCCAGCCCCAGCTCTGTTCCATAAGAAGCAATGAGGACCTTGTTG
GAGGGTGGGGGCATTGTGGCTGCGGAGCTGAGGAAATTACTACTCTGTGTCCCCCACCGCCATT
TTGGTTCAATTCAACTCAGCTTAGTTCTCTCTCATTTCAGACCAACTCTTTCTCTATGTGTCGG
GTGCTAGATTCCACCGTCTATTTAACAAGGAAGCCCCAAATATACTTCGGCTAGAAAGAAAAAT
GTAAACAAACAAGGTACAGCATAATAGTAAATGCCACGGTGCACTCTATGGAGAGGGGTTCAGA
GGAGGTGAGTGTGTGTGAGTGAGTGAGTGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTAAAACACCTGAGCTAAGAGTGGCAGGTACCTAGAATCTCAGGTGGCTG
CTTGTTTCTTTGTGCAGGGGTCTCTGGGGCTGCTGGTTTCATCTACAGTTACGAACATTTAGGG
TTCTGCAGACTGGGATGGGTGATGATGACCTGTATCCTGAGGCTGGGACTGTTCTTGGCCCTTT
GAGATCTACTCAATGGTGCCTAGAAAGAGGTAGGGATCTTGGGATCCTGTGGTCTTAATTTCCT
AATCCAAGTTGAAGCATACTTTTAGAATAACTCTAGAACACACAGAGAAGGAATTTTTCCCTTC
CTGGTCCTACCCACCAAGTCTGTATCTCCTTGTGATGTTGAAGGAAAGCTGAGGTTTTCCTGGC
CATTGACTTGTAGGAGTAGGGAAGGCTTTTCAGGGTAAAGCTGACGGTGTGTGTGCCTGGCAAT
GACGGACCCTCAGAAGCAGTGTGTAGGGGTTTTGATACTCAGCAGTCTGCCTCAGCCTAGGCTT
CATCATTGGCCTGATGAGGCTCTACCCATCATATCGAGTGAATGACAGTTCCTCTGCTTGATGC
CTTTATCCTGTCTGTGCTCTGGGGGCTTCTGCCCTTAGGAGAAGGCAGTCCACACGACCTAGGA
ACTCATCATAAGTGTGACCAGTTTGTTCTCCTTTGCTTAGAGGCTGACTTCTGACTGAGAGATG
AAGGTCCCAGAATGGCCTTTTAGTTTCTGGAATTCCAACTTTCTCACCAACATGGAGGGAGACC
ATGAAGTAAATTCCTTTAGTAGAAGGAAAACTTCTACGAAGCCTTGTGCTATCACTGACCCCAG
ACCTCTAACACCTTGAAGTCCTATGGTTCCCACTAAACTGCAATCTGTCTAAAGTGTTAGTTCC
TCTGTCCCCAACCTGTCATCCCAGAATAGTACCCTGCCTGCCCTTGAGCCCTGCCCTGCGGCTG
AGGCCTGGGATGTGAGCACCTCTTTGTGGAATATTAGCACTGACCCTTGGTTCTTTTTGAGGGT
TAGTTCTTCTCTAGAAACTTCTATGAAGACTGACAGTTGTTTCAGGCTTAGAGACAACACCAAC
AATCCCCTTAAGAATCGTGCCAGTGACTCTGAGTCACCATTCTTCTTCCCACAGAGACCCTGCT
CCAGACCCGGTCATTTTTTGTCATAGTTGTCTGCCCACCTTGTCCATTATTGCTTCTCATCTTC
CTACAACCTGTTTCTTCAGAATGGATCACTGTGTGTTCCTCCACCTTTCTCAGAACCGTAGACT
GGGGTCCCCTTCTCAGAGCTATCCTGTCGGCTGTGGTCCCCCTCTCTCACTAGCCACCCTCTGT
TCCTGCTCTGGGCCTCTTGCTTTCCAGTGCCTTCCAGACCTTACTCCATTATCACCCTTTCCAT
CCAAGGCCTTGCCATCCTCCCCCGACTAGGCTTCTTATCTTTTTCTTTCTTTCTCCCTCCCCTC
TTAGTTTTTTAAGACAGGGTCTCTCTACTTCGCCCTGGATGTCCTGGAACTCACTCTATAGACT
GGGTTGGTCTCGAACTCACAGAGGTCTGCCTGCCTCTGCCATGAGAGTCCTGGGAGTATAGCCA
CTCACTACCACTGCCTGGCACCACTGGCCTTCTTTAATGACGCCAATTAGCATGCCAAGGACCC
TTGGATCGCCACCTTCACAGCTGGAGTTCTCTTCAGACTTTTCAATCTGTCTCCCCTCTCTTCC
CATTTCTTCCCTAACCCACTGCACACCGCCTTCCATGTTTGCCTCTCCATTGAAACGACTCCTT
TCTAGTTCCGTACGCTAGCCAGCTTCCCTGTGTAATACAGCCCAAGCTTGGTTTCTGTGACTCG
GTTTCTTTGTGATGAGCCTCTGATGTGGTCTCTCTGGCTTTCACTGGTCTTGTTTCTCCACCTG
ACCCTGATACGCTGAAATGTCCCTGAGTTGACTTTGTCCTTGGTTAATTCTATTCTTGTTCTGC
ACACTCCTAGCGTGAATTTAGGTGACATTTTATGTAACGACTACATTGAGGCTTCTGGTTCTCA
GGTTTGTTATCTGATCTTACATCTTGAGCTCCAGCCCCTCACATCTTCCCGGGCGCTCTGCAGG
TGCATCAAAGTCAGTATGCTCCATGAGACCCCAGTATGAGGTCTCCTAACACTTTGTCATTCTC
AGAACAGCACCCAAGATACCACACCCTCCATCATGTTGTGGGCTCCTGAGAGCAGGGCCACATT
CCTTCATTCATCTTCCTGTCTCTAGAATAGATCCTGGAACACAGTAGGTGCTCAATTAGTGTAA
ATTGAGTGAATAAATGAAGGACATGTTTATCTCAAAGTTAAGAGATGCACAACTGTATATTTGA
GTATCTTATGTTATAGCACTCAGCAAAGTCCAGCAAACCATCTCTGGATATGGGACTTTCTTTC
TGATAGTCTTTCCAGAGAAGCTTGATGCTATGGAATTTCCTGTGGTGATAGGGAGGGCTTTCAT
CTGCGAGGTCCAGTTTAGTAGTCATCAACAGCATGTGACGACTGAGACTAGAAACAGCTTAAGG
ACATGAAAATGTTATTTTATTTAGTTTCAATTCATTTAAGTCTAACTAGGCAAGATGGCCAGTG
GCTGCTAAATTAAACTATAATTTAATTAATTGTTTTAAAGAGCAGTTTCTTCATAGCTATCCTG
ATACCACACTGTTACCTTCTTCCTGCCTCAGTTTCCTCAACTCTCCCTCTGCCTAAGTTGGCAG
CTGAGTTTTTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATTGCAGCTGAGTTTTTAAAAG
GCTTATCTTATACAGACTGTAGGATAACACCAGACCCCAGCAGCGTTTAAAGAGAACTCGTTAG
TGTTACACTGGTTGAGACCACATTTCTCCTGGGGTTTCCATTTTTCTCATTAGAAAGGTAAGGG
GTGAGTTGTGGTGGGTTGCGATGGACTGAAACTGACTTTATCTGCTTTGTGGGCCAACTGTGCA
CAGGTCTGCCCAGCATCCTGCTCACTGATTGGTAACTTGCAGTTGGCCCTAATAGGACTGTGAA
GACCATACTCAGTGTCTTACGCTTAGAACACGTATATAAACTTACAAAAAGGGAGCAACAGAGT
GGATCCTTAGAATGTTAAAGGAGTCTTGGCTTAACTGGAGACTGTACTTGCAAACCTTTATCCC
CGAGAGCCACAGTAAACATGCTTAAGAGTCCTACACACCGGGGTTGGGGATTTAGCTCAGCAGT
AGAGCACTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAACTCCGAAAAAAAGAAAAAA
GAAAAAAAGAAAAAAAAAAAGAGTCCTACACACCAACCGCACCATGAAGGCATCTGCATCTTCA
CTAAAATGGGGTGGCTCTGGTTCCACTAATCAGACATAGTTGTTCCCTGGTGACTCTCTTAGGG
ACTGCCTCTCTAAAGATCTGAGGAAGAAAACTATGGCTAGAACTCCACCATGGCCAGAAGGATT
TTCCTACAAAGCACTTTATCTGCAGAGTGTAAACCTGTCATTAAGCACCTGCTGTCTGCTGGGT
CAAGTTCAAACTCCTTTCCAAAGTCAAAAGATTCTCTGCAGATAACTTGGCTCTGTCTCGGTCT
CCTCTCTTGTATGCCCTTTCACCTTACCTGCTCACAAAATAAATACCCTTGGATGCTC

hide sequence

RefSeq Acc Id:

XM_039107313 ⟹ XP_038963241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	104,757,281 - 104,811,300 (-)	NCBI
mRatBN7.2	4	103,195,330 - 103,252,989 (-)	NCBI

RefSeq Acc Id:

XM_063285775 ⟹ XP_063141845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	104,757,281 - 104,811,293 (-)	NCBI

RefSeq Acc Id:

XM_063285776 ⟹ XP_063141846

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	104,757,281 - 104,811,307 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100065	(Get FASTA)	NCBI Sequence Viewer
	XP_006236694	(Get FASTA)	NCBI Sequence Viewer
	XP_017448024	(Get FASTA)	NCBI Sequence Viewer
	XP_038963241	(Get FASTA)	NCBI Sequence Viewer
	XP_063141845	(Get FASTA)	NCBI Sequence Viewer
	XP_063141846	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90985	(Get FASTA)	NCBI Sequence Viewer
	EDL90986	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009184
	ENSRNOP00000009184.5
	ENSRNOP00000077690.2
	ENSRNOP00000086450
	ENSRNOP00000086450.2
	ENSRNOP00000093849.2
	ENSRNOP00000097130.1
	ENSRNOP00000101538.1

RefSeq Acc Id:

NP_001100065 ⟸ NM_001106595

- UniProtKB:

D4A3D2 (UniProtKB/TrEMBL), A6IA68 (UniProtKB/TrEMBL), A0A8I6AQZ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTVGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQERLHR
CGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVS
VDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQA
VGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFL
HLSEERRQQLKKQYYFDCSCEHCQKGLKDDLFLAVKEDPKPSQEVVKEMTQFSKDTLEKIDKAR
SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIVSEVLSYLQAFEEASHYARRMVDGYMKL
YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL
RMFRQNEFMYHKMREAALNNQPMQVMAEPSNEPAPALFHKKQ

hide sequence

RefSeq Acc Id:	XP_006236694 ⟸ XM_006236632
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AKQ9 (UniProtKB/TrEMBL), A6IA67 (UniProtKB/TrEMBL), A0A8I6AQZ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQERLHR CGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVS VDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQA VGVGIFPNLGLVNHDCWPNCTVIFNNGKIELRALGKISEGEELTVSYIDFLHLSEERRQQLKKQ YYFDCSCEHCQKGLKDDLFLAVKEDPKPSQEVVKEMTQFSKDTLEKIDKARSEGLYHEVVKLCR ECLEKQEPVFADTNLYVLRLLSIVSEVLSYLQAFEEASHYARRMVDGYMKLYHHNNAQLGMAVM RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM REAALNNQPMQVMAEPSNEPAPALFHKKQ hide sequence

RefSeq Acc Id:	XP_017448024 ⟸ XM_017592535
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AQZ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQERLHR CGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVS VDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQA VGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFL HLSEERRQQLKKQYYFDCSCEHCQKGLKDDLFLAVKEDPKVVKLCRECLEKQEPVFADTNLYVL RLLSIVSEVLSYLQAFEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGM ICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPSN EPAPALFHKKQ hide sequence

Ensembl Acc Id:

ENSRNOP00000009184 ⟸ ENSRNOT00000009184

RefSeq Acc Id:	XP_038963241 ⟸ XM_039107313
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5YCG5 (UniProtKB/TrEMBL), A0A8I6AQZ0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093849 ⟸ ENSRNOT00000097634

Ensembl Acc Id:

ENSRNOP00000097130 ⟸ ENSRNOT00000093960

Ensembl Acc Id:

ENSRNOP00000086450 ⟸ ENSRNOT00000119454

Ensembl Acc Id:

ENSRNOP00000077690 ⟸ ENSRNOT00000094006

RefSeq Acc Id:	XP_063141846 ⟸ XM_063285776
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063141845 ⟸ XM_063285775
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A681 (UniProtKB/TrEMBL), A0A8I6AQZ0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101538 ⟸ ENSRNOT00000128930

Protein Domains

MYND-type SET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3D2-F1-model_v2	AlphaFold	D4A3D2	1-490	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693110

Promoter ID:

EPDNEW_R3635

Type:

single initiation site

Name:

Smyd1_1

Description:

SET and MYND domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	99,125,102 - 99,125,162	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305105	AgrOrtholog
BioCyc Gene	G2FUF-44191	BioCyc
Ensembl Genes	ENSRNOG00000006776	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009184	ENTREZGENE
	ENSRNOT00000009184.7	UniProtKB/TrEMBL
	ENSRNOT00000093960.2	UniProtKB/TrEMBL
	ENSRNOT00000094006.2	UniProtKB/TrEMBL
	ENSRNOT00000097634.2	UniProtKB/TrEMBL
	ENSRNOT00000119454	ENTREZGENE
	ENSRNOT00000119454.2	UniProtKB/TrEMBL
	ENSRNOT00000128930.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.220.160	UniProtKB/TrEMBL
	1.25.40.10	UniProtKB/TrEMBL
	1.25.40.970	UniProtKB/TrEMBL
	2.170.270.10	UniProtKB/TrEMBL
	6.10.140.2220	UniProtKB/TrEMBL
InterPro	H3K4_H4K5_MeTrfase	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	SMYD1_SET	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	Znf_MYND	UniProtKB/TrEMBL
KEGG Report	rno:297333	UniProtKB/TrEMBL
NCBI Gene	297333	ENTREZGENE
PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD	UniProtKB/TrEMBL
	HISTONE-LYSINE N-METHYLTRANSFERASE SMYD1	UniProtKB/TrEMBL
Pfam	SET	UniProtKB/TrEMBL
	zf-MYND	UniProtKB/TrEMBL
PhenoGen	Smyd1	PhenoGen
PROSITE	SET	UniProtKB/TrEMBL
	ZF_MYND_1	UniProtKB/TrEMBL
	ZF_MYND_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006776	RatGTEx
SMART	SET	UniProtKB/TrEMBL
Superfamily-SCOP	SSF82199	UniProtKB/TrEMBL
UniProt	A0A8I5YCG5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A681	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKQ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQZ0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L979_RAT	UniProtKB/TrEMBL
	A6IA67	ENTREZGENE, UniProtKB/TrEMBL
	A6IA68	ENTREZGENE, UniProtKB/TrEMBL
	D4A3D2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Smyd1	SET and MYND domain containing 1	Smyd1_predicted	SET and MYND domain containing 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Smyd1_predicted	SET and MYND domain containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations