Ro60 (Ro60, Y RNA binding protein) - Rat Genome Database

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Gene: Ro60 (Ro60, Y RNA binding protein) Rattus norvegicus
Analyze
Symbol: Ro60
Name: Ro60, Y RNA binding protein
RGD ID: 1305083
Description: Predicted to enable U2 snRNA binding activity. Predicted to be involved in cellular response to interferon-alpha and regulation of gene expression. Predicted to act upstream of or within several processes, including cilium assembly; response to UV; and smoothened signaling pathway. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human RO60 (Ro60, Y RNA binding protein); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60 kDa SS-A/Ro ribonucleoprotein; LOC304833; RNA-binding protein RO60; Sjogren syndrome antigen A2; Ssa2; TROVE domain family, member 2; Trove2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81358,049,838 - 58,070,828 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1358,049,858 - 58,076,264 (-)EnsemblGRCr8
mRatBN7.21355,499,514 - 55,520,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1355,499,534 - 55,520,504 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1358,067,723 - 58,089,035 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01359,335,175 - 59,356,177 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01356,620,315 - 56,641,564 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01360,546,892 - 60,567,882 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1360,546,912 - 60,567,882 (-)Ensemblrn6Rnor6.0
Rnor_5.01365,535,453 - 65,556,443 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41357,584,656 - 57,605,648 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1355,587,205 - 55,608,219 (-)NCBICelera
RGSC_v3.11357,600,708 - 57,614,506 (-)NCBI
Cytogenetic Map13q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
chloroacetaldehyde  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clodronic acid  (ISO)
cocaine  (EXP)
crotonaldehyde  (ISO)
Cuprizon  (EXP,ISO)
cyclosporin A  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
fenofibrate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
isoprenaline  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
metformin  (EXP)
methylmercury chloride  (ISO)
miconazole  (ISO)
nickel dichloride  (ISO)
Nutlin-3  (ISO)
omega-6 fatty acid  (ISO)
ozone  (ISO)
phenobarbital  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
succimer  (ISO)
thioacetamide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
ribonucleoprotein complex  (IBA,IEA,ISO)

Molecular Function
metal ion binding  (IEA)
protein binding  (ISO)
RNA binding  (IBA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12788971   PMID:14680639   PMID:17289661   PMID:21289087   PMID:26382853  


Genomics

Comparative Map Data
Ro60
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81358,049,838 - 58,070,828 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1358,049,858 - 58,076,264 (-)EnsemblGRCr8
mRatBN7.21355,499,514 - 55,520,504 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1355,499,534 - 55,520,504 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1358,067,723 - 58,089,035 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01359,335,175 - 59,356,177 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01356,620,315 - 56,641,564 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01360,546,892 - 60,567,882 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1360,546,912 - 60,567,882 (-)Ensemblrn6Rnor6.0
Rnor_5.01365,535,453 - 65,556,443 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41357,584,656 - 57,605,648 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1355,587,205 - 55,608,219 (-)NCBICelera
RGSC_v3.11357,600,708 - 57,614,506 (-)NCBI
Cytogenetic Map13q21NCBI
RO60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,059,612 - 193,091,777 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,059,445 - 193,091,777 (+)Ensemblhg38GRCh38
GRCh371193,028,742 - 193,060,907 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361191,295,376 - 191,327,530 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341189,760,820 - 189,786,771NCBI
Celera1166,138,163 - 166,170,512 (+)NCBICelera
Cytogenetic Map1q31.2NCBI
HuRef1164,264,353 - 164,296,702 (+)NCBIHuRef
CHM1_11194,450,271 - 194,482,819 (+)NCBICHM1_1
T2T-CHM13v2.01192,406,634 - 192,438,985 (+)NCBIT2T-CHM13v2.0
Ro60
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,626,528 - 143,652,794 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,626,528 - 143,652,806 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381143,750,790 - 143,777,063 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,750,790 - 143,777,068 (-)Ensemblmm10GRCm38
MGSCv371145,597,920 - 145,624,181 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361145,517,790 - 145,539,196 (-)NCBIMGSCv36mm8
Celera1146,325,813 - 146,352,080 (-)NCBICelera
Cytogenetic Map1FNCBI
cM Map162.54NCBI
Ro60
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540630,468,775 - 30,491,206 (+)Ensembl
ChiLan1.0NW_00495540630,468,775 - 30,491,206 (+)NCBIChiLan1.0ChiLan1.0
RO60
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2156,701,008 - 56,733,264 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1156,370,687 - 56,397,192 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01168,518,796 - 168,551,137 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11172,811,822 - 172,844,152 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1172,811,822 - 172,838,373 (+)EnsemblpanPan2panpan1.1
RO60
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,975,824 - 6,004,327 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl385,975,935 - 5,997,945 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha386,072,834 - 6,101,961 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0385,992,433 - 6,021,602 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl385,992,542 - 6,021,612 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1385,991,803 - 6,020,913 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0386,357,378 - 6,386,491 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0386,586,152 - 6,615,302 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ro60
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934480,822,410 - 80,855,492 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366381,304,048 - 1,317,948 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366381,289,452 - 1,320,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RO60
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl10694,445 - 725,346 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.110694,335 - 725,378 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2102,325,305 - 2,327,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RO60
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12536,339,236 - 36,364,066 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2536,340,487 - 36,363,637 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605537,288,148 - 37,312,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ro60
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624814503,271 - 528,807 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624814503,271 - 528,872 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ro60
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11023,670,090 - 23,696,453 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ro60
143 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:184
Count of miRNA genes:125
Interacting mature miRNAs:154
Transcripts:ENSRNOT00000004701
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133996821183286298Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133708798382087983Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)134098358585983585Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133379409678794096Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133992469384924693Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133483494779834947Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133379409660914504Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133981472684814726Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133996821184968211Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)133828629883286298Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat

Markers in Region
RH143150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21355,505,775 - 55,505,986 (+)MAPPERmRatBN7.2
Rnor_6.01360,553,154 - 60,553,364NCBIRnor6.0
Rnor_5.01365,541,715 - 65,541,925UniSTSRnor5.0
RGSC_v3.41357,590,918 - 57,591,128UniSTSRGSC3.4
Celera1355,593,467 - 55,593,677UniSTS
Cytogenetic Map13q21UniSTS
RH143907  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21355,500,894 - 55,501,105 (+)MAPPERmRatBN7.2
Rnor_6.01360,548,273 - 60,548,483NCBIRnor6.0
Rnor_5.01365,536,834 - 65,537,044UniSTSRnor5.0
RGSC_v3.41357,586,037 - 57,586,247UniSTSRGSC3.4
Celera1355,588,586 - 55,588,796UniSTS
Cytogenetic Map13q21UniSTS
Cytogenetic Map13q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 355 192 11 140 80 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004701   ⟹   ENSRNOP00000004701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1358,049,858 - 58,070,828 (-)Ensembl
mRatBN7.2 Ensembl1355,499,534 - 55,520,504 (-)Ensembl
Rnor_6.0 Ensembl1360,546,912 - 60,567,882 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100498   ⟹   ENSRNOP00000079108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1358,049,858 - 58,070,828 (-)Ensembl
mRatBN7.2 Ensembl1355,499,534 - 55,520,504 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121339   ⟹   ENSRNOP00000105272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1358,049,858 - 58,076,264 (-)Ensembl
RefSeq Acc Id: NM_001107183   ⟹   NP_001100653
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81358,049,838 - 58,070,828 (-)NCBI
mRatBN7.21355,499,514 - 55,520,504 (-)NCBI
Rnor_6.01360,546,892 - 60,567,882 (-)NCBI
Rnor_5.01365,535,453 - 65,556,443 (-)NCBI
RGSC_v3.41357,584,656 - 57,605,648 (-)RGD
Celera1355,587,205 - 55,608,219 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100653 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM09604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004701
  ENSRNOP00000004701.4
  ENSRNOP00000079108.1
  ENSRNOP00000105272.1
RefSeq Acc Id: NP_001100653   ⟸   NM_001107183
- UniProtKB: D3ZRN5 (UniProtKB/TrEMBL),   A6ICP3 (UniProtKB/TrEMBL),   A0A8I5ZM47 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004701   ⟸   ENSRNOT00000004701
Ensembl Acc Id: ENSRNOP00000079108   ⟸   ENSRNOT00000100498
Ensembl Acc Id: ENSRNOP00000105272   ⟸   ENSRNOT00000121339
Protein Domains
TROVE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRN5-F1-model_v2 AlphaFold D3ZRN5 1-538 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698873
Promoter ID:EPDNEW_R9398
Type:initiation region
Name:Trove2_1
Description:TROVE domain family, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01360,567,874 - 60,567,934EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305083 AgrOrtholog
BioCyc Gene G2FUF-18026 BioCyc
Ensembl Genes ENSRNOG00000003434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004701 ENTREZGENE
  ENSRNOT00000004701.9 UniProtKB/TrEMBL
  ENSRNOT00000100498.2 UniProtKB/TrEMBL
  ENSRNOT00000121339.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro TROVE UniProtKB/TrEMBL
  TROVE2 UniProtKB/TrEMBL
  TROVE_dom_sf UniProtKB/TrEMBL
  vWA_Ro60 UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:304833 UniProtKB/TrEMBL
NCBI Gene 304833 ENTREZGENE
PANTHER 60 KDA SS-A/RO RIBONUCLEOPROTEIN UniProtKB/TrEMBL
  PTHR14202 UniProtKB/TrEMBL
Pfam TROVE UniProtKB/TrEMBL
  vWA_Ro60 UniProtKB/TrEMBL
PhenoGen Ro60 PhenoGen
PROSITE TROVE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003434 RatGTEx
Superfamily-SCOP SSF140864 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5ZM47 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LK12_RAT UniProtKB/TrEMBL
  A6ICP3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZRN5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-12-04 Ro60  Ro60, Y RNA binding protein  Trove2  TROVE domain family, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Trove2  TROVE domain family, member 2   Trove2_predicted  TROVE domain family, member 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Trove2_predicted  TROVE domain family, member 2 (predicted)  Ssa2_predicted  Sjogren syndrome antigen A2 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Ssa2_predicted  Sjogren syndrome antigen A2 (predicted)      Symbol and Name status set to approved 70820 APPROVED