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Gene: Nagk (N-acetylglucosamine kinase) Rattus norvegicus

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Symbol:

Nagk

Name:

N-acetylglucosamine kinase

RGD ID:

1305057

Description:

Predicted to enable N-acetylglucosamine kinase activity; N-acylmannosamine kinase activity; and muramyl dipeptide kinase activity. Predicted to be involved in several processes, including N-acetylglucosamine catabolic process; UDP-N-acetylglucosamine biosynthetic process; and positive regulation of nucleotide-binding activity oligomerization domain containing 2 signaling pathway. Predicted to act upstream of or within several processes, including intracellular signal transduction; protein polyubiquitination; and regulation of canonical NF-kappaB signal transduction. Orthologous to human NAGK (N-acetylglucosamine kinase); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; amino sugar metabolic pathway; french type sialuria pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

glcNAc kinase; LOC297393; MGC124788; muramyl dipeptide kinase; N-acetyl-D-glucosamine kinase; N-acetyl-D-mannosamine kinase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NAGK (N-acetylglucosamine kinase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Nagk (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nagk (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NAGK (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NAGK (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nagk (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NAGK (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NAGK (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nagk (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Nagk (N-acetylglucosamine kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NAGK (N-acetylglucosamine kinase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nagk (N-acetylglucosamine kinase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	nagk (N-acetylglucosamine kinase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	W06B4.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6218	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	W06B4.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	W06B4.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	nagk	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	117,838,761 - 117,846,304 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	117,838,826 - 117,847,836 (+)	Ensembl				GRCr8
mRatBN7.2	4	116,281,179 - 116,293,870 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	116,281,328 - 116,313,137 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	121,759,847 - 121,767,170 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	117,535,038 - 117,542,361 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	116,148,820 - 116,156,143 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	115,473,848 - 115,485,027 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	115,473,811 - 115,481,438 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	180,063,057 - 180,074,241 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	117,989,937 - 117,997,260 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	105,273,931 - 105,281,254 (+)	NCBI		Celera
RGSC_v3.1	4	118,234,435 - 118,242,566 (+)	NCBI
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Neoplasm Metastasis (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

clofibric acid (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

cyproconazole (ISO)

dextran sulfate (ISO)

dibutyl phthalate (EXP,ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

Evodiamine (ISO)

finasteride (EXP)

flutamide (EXP)

formaldehyde (ISO)

FR900359 (ISO)

furfural (ISO)

gentamycin (EXP)

inulin (ISO)

ivermectin (ISO)

leflunomide (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

ochratoxin A (EXP,ISO)

okadaic acid (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

Soman (EXP)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate phosphorylation (IEA)

defense response to bacterium (ISO,ISS)

immune system process (IEA)

innate immune response (IEA)

N-acetylglucosamine catabolic process (ISO)

N-acetylglucosamine metabolic process (IEA,ISO)

N-acetylneuraminate catabolic process (IEA)

positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway (IEA,ISO,ISS)

response to muramyl dipeptide (ISO,ISS)

UDP-N-acetylglucosamine biosynthetic process (ISO)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

muramyl dipeptide kinase activity (IEA,ISO,ISS)

N-acetylglucosamine kinase activity (IBA,IEA,ISO,ISS)

N-acylmannosamine kinase activity (IEA,ISO)

nucleotide binding (IEA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

2-hydroxyglutaric aciduria pathway (ISO)

amino sugar metabolic pathway (IEA,ISO)

french type sialuria pathway (ISO)

glutamic acid/glutamate metabolic pathway (ISO)

homocarnosinosis pathway (ISO)

nucleotide sugar metabolic pathway (IEA)

sialic acid storage disease pathway (ISO)

succinic semialdehyde dehydrogenase deficiency pathway (ISO)

Tay-Sachs disease pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9523722	PMID:10824116	PMID:12477932	PMID:15489334	PMID:17448495	PMID:19056867	PMID:22692205	PMID:23376485	PMID:24625575	PMID:25921606	PMID:26272270	PMID:26467288

Genomics

Comparative Map Data

Nagk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	117,838,761 - 117,846,304 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	117,838,826 - 117,847,836 (+)	Ensembl				GRCr8
mRatBN7.2	4	116,281,179 - 116,293,870 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	116,281,328 - 116,313,137 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	121,759,847 - 121,767,170 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	117,535,038 - 117,542,361 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	116,148,820 - 116,156,143 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	115,473,848 - 115,485,027 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	115,473,811 - 115,481,438 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	180,063,057 - 180,074,241 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	117,989,937 - 117,997,260 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	105,273,931 - 105,281,254 (+)	NCBI		Celera
RGSC_v3.1	4	118,234,435 - 118,242,566 (+)	NCBI
Cytogenetic Map	4	q34	NCBI

NAGK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	71,068,296 - 71,079,808 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	71,064,344 - 71,079,808 (+)	Ensembl			hg38	GRCh38
GRCh37	2	71,295,426 - 71,306,938 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	71,148,955 - 71,159,279 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	71,207,101 - 71,217,426	NCBI
Celera	2	71,146,088 - 71,156,678 (+)	NCBI		Celera
Cytogenetic Map	2	p13.3	NCBI
HuRef	2	71,031,829 - 71,042,418 (+)	NCBI		HuRef
CHM1_1	2	71,224,728 - 71,235,318 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	71,079,325 - 71,090,837 (+)	NCBI		T2T-CHM13v2.0

Nagk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,770,810 - 83,779,538 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	83,771,964 - 83,781,000 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	83,794,983 - 83,802,556 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,794,982 - 83,804,018 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	83,745,051 - 83,752,550 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	83,760,715 - 83,768,214 (+)	NCBI		MGSCv36	mm8
Celera	6	85,778,192 - 85,785,696 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.96	NCBI

Nagk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	14,205,813 - 14,215,156 (-)	Ensembl
ChiLan1.0	NW_004955424	14,205,689 - 14,215,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

NAGK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	55,308,450 - 55,318,837 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	55,304,932 - 55,321,577 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	71,114,832 - 71,125,182 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	72,616,072 - 72,626,435 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	72,616,077 - 72,626,435 (+)	Ensembl			panPan2	panpan1.1

NAGK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	51,367,477 - 51,376,461 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	51,105,625 - 51,114,621 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	52,328,061 - 52,337,018 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	52,328,068 - 52,337,024 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	51,330,536 - 51,339,383 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	51,402,356 - 51,411,380 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	51,977,092 - 51,986,120 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Nagk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	13,378,222 - 13,387,818 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	15,183,804 - 15,192,950 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	15,183,493 - 15,193,069 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NAGK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	71,500,337 - 71,512,955 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	71,496,191 - 71,513,020 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	74,946,433 - 74,959,118 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NAGK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	36,086,624 - 36,098,465 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	36,082,137 - 36,096,914 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	75,929,507 - 75,940,845 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nagk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	2,382,709 - 2,391,656 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624762	2,382,708 - 2,391,896 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Nagk
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	62,443,880 - 62,451,496 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Nagk
57 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	93
Count of miRNA genes:	82
Interacting mature miRNAs:	87
Transcripts:	ENSRNOT00000042875
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	96731383	141731383	Rat
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	92406430	137406430	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	88883695	133883695	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	88883695	133883695	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	113634167	149763391	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat

Markers in Region

MARC_12813-12814:999878148:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	117,840,781 - 117,841,585 (+)	Marker Load Pipeline
mRatBN7.2	4	116,283,157 - 116,283,961 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	115,475,833 - 115,476,636	NCBI	Rnor6.0
Rnor_5.0	4	180,065,037 - 180,065,840	UniSTS	Rnor5.0
RGSC_v3.4	4	117,991,738 - 117,992,541	UniSTS	RGSC3.4
Celera	4	105,275,732 - 105,276,535	UniSTS
Cytogenetic Map	4	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC107647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042875 ⟹ ENSRNOP00000039247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	117,839,735 - 117,847,836 (+)	Ensembl
mRatBN7.2 Ensembl	4	116,282,111 - 116,313,137 (+)	Ensembl
Rnor_6.0 Ensembl	4	115,473,811 - 115,481,438 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100970 ⟹ ENSRNOP00000078861

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	117,838,826 - 117,847,835 (+)	Ensembl
mRatBN7.2 Ensembl	4	116,281,328 - 116,288,647 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108444 ⟹ ENSRNOP00000084218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	117,838,952 - 117,847,836 (+)	Ensembl
mRatBN7.2 Ensembl	4	116,281,377 - 116,313,137 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118649 ⟹ ENSRNOP00000093402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	117,838,956 - 117,847,222 (+)	Ensembl
mRatBN7.2 Ensembl	4	116,281,375 - 116,289,602 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146359 ⟹ ENSRNOP00000102561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	117,838,952 - 117,847,836 (+)	Ensembl

RefSeq Acc Id:

NM_001037768 ⟹ NP_001032857

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,838,981 - 117,846,304 (+)	NCBI
mRatBN7.2	4	116,281,357 - 116,288,680 (+)	NCBI
Rnor_6.0	4	115,474,032 - 115,481,355 (+)	NCBI
Rnor_5.0	4	180,063,057 - 180,074,241 (+)	NCBI
RGSC_v3.4	4	117,989,937 - 117,997,260 (+)	RGD
Celera	4	105,273,931 - 105,281,254 (+)	RGD

Sequence:

show sequence

GGCTTGCTACGGCGAGACCTGCGGTGGTGACGGTAGTATGGCCGCACTTTATGGTGGCGTGGAA
GGGGGAGGCACACGGTCCAAAGTCCTTTTACTTTCTGAGGATGGGCAGATCCTGGCAGAAGCAG
ATGGACTGAGCACAAATCACTGGCTGATTGGCACAGGTACCTGTGTGGAGAGGATCAATGAGAT
GGTGGACAGGGCTAAACGGAAGGCTGGAGTGGATCCTCTGGTACCCCTTCGAAGCCTGGGCTTG
TCCCTGAGTGGTGGGGAGCAGGAGGATGCAGTGAGGCTCCTGATGGAGGAGTTGAGGGACCGAT
TTCCCTACCTGAGTGAAAGTTACTTCATCACCACTGATGCAGCAGGTTCCATCGCCACAGCTAC
ACCGGATGGTGGGATTGTGCTCATCTCTGGAACAGGCTCCAACTGTAGGCTTATCAACCCTGAT
GGCTCTGAGAGTGGCTGTGGTGGCTGGGGCCACATGATGGGAGACGAGGGATCAGCCTACTGGA
TTGCACACCAAGCTGTGAAAATTGTGTTTGACTCCATTGACAACCTGGAAGCAGCTCCTCATGA
TATTGGCCATGTCAAGCAGGCCATGTTCAACTACTTCCAGGTGCCAGATCGGCTAGGAATCCTC
ACTCACTTGTATAGGGACTTTGATAAGTCCAAGTTTGCTGGATTTTGTCAGAAAATTGCAGAAG
GTGCACAGCAGGGAGACCCTCTTTCCAGGTTCATCTTCAGAAAGGCTGGGGAGATGCTGGGCAG
ACACGTTGTGGCAGTATTGCCAGAGATTGACCCAGTTTTGTTCCAAGGGGAGCTTGGCCTCCCC
ATTCTGTGTGTGGGCTCAGTGTGGAAGAGCTGGGAGCTACTGAAGGAAGGCTTTCTCCTGGCAC
TGACGCAGGGCCGAGAGCAACAGGCACAGAACTCCTTCTCCAGTTTCACCCTGATGAAGTTGAG
GCACTCTTCTGCACTGGGAGGGGCCAGCCTGGGGGCCAGGCACATTGGACACCACCTTCCCATG
GACTACAGCGTCAATGCCATTGCCTTCTATTCCTATACCTTCTAGGGGCTGCCCCTCTTCCCAT
TCAGCCAACACTGAGTGTTGGGAGATTTCTCTTTTTTAAAAACACATGAGAAAATAAATGCACT
TTACTCCCTCCCCAGCAGGGTGTTATCCTCAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236740 ⟹ XP_006236802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,838,761 - 117,846,286 (+)	NCBI
mRatBN7.2	4	116,281,179 - 116,293,870 (+)	NCBI
Rnor_6.0	4	115,473,848 - 115,485,027 (+)	NCBI
Rnor_5.0	4	180,063,057 - 180,074,241 (+)	NCBI

Sequence:

show sequence

GCTGGGTTCCGCCTCCGCGGGAAGCCGGCACTTGAACAGCGGACTGGAAGAAGCCGGAGAGGCT
GTCTGGACGCGACAGCCAGGGAGAGAGAGGATGTAGCATCCACACCCTACGCATGCGTGTCGTC
ATCACATGACAGGGGCGGTGCCCGCGTGGGCGGGTGCGAAGTCCCGGCTAGGGTCGGGCTTGCT
ACGGCGAGACCTGCGGTGGTGACGGTAGTATGGCCGCACTTTATGGTGGCGTGGAAGGGGGAGG
CACACGGTCCAAAGTCCTTTTACTTTCTGAGGATGGGCAGATCCTGGCAGAAGCAGATGGACTG
AGCACAAATCACTGGCTGATTGGCACAGGTACCTGTGTGGAGAGGATCAATGAGATGGTGGACA
GGGCTAAACGGAAGGCTGGAGTGGATCCTCTGGTACCCCTTCGAAGCCTGGGCTTGTCCCTGAG
TGGTGGGGAGCAGGAGGATGCAGTGAGGCTCCTGATGGAGGAGTTGAGGGACCGATTTCCCTAC
CTGAGTGAAAGTTACTTCATCACCACTGATGCAGCAGGTTCCATCGCCACAGCTACACCGGATG
GTGGGATTGTGCTCATCTCTGGAACAGGCTCCAACTGTAGGCTTATCAACCCTGATGGCTCTGA
GAGTGGCTGTGGTGGCTGGGGCCACATGATGGGAGACGAGGGATCAGCCTACTGGATTGCACAC
CAAGCTGTGAAAATTGTGTTTGACTCCATTGACAACCTGGAAGCAGCTCCTCATGATATTGGCC
ATGTCAAGCAGGCCATGTTCAACTACTTCCAGGTGCCAGATCGGCTAGGAATCCTCACTCACTT
GTATAGGGACTTTGATAAGTCCAAGTTTGCTGGATTTTGTCAGAAAATTGCAGAAGGTTTTGTT
CCAAGGGGAGCTTGGCCTCCCCATTCTGTGTGTGGGCTCAGTGTGGAAGAGCTGGGAGCTACTG
AAGGAAGGCTTTCTCCTGGCACTGACGCAGGGCCGAGAGCAACAGGCACAGAACTCCTTCTCCA
GTTTCACCCTGATGAAGTTGAGGCACTCTTCTGCACTGGGAGGGGCCAGCCTGGGGGCCAGGCA
CATTGGACACCACCTTCCCATGGACTACAGCGTCAATGCCATTGCCTTCTATTCCTATACCTTC
TAGGGGCTGCCCCTCTTCCCATTCAGCCAACACTGAGTGTTGGGAGATTTCTCTTTTTTAAAAA
CACATGAGAAAATAAATGCACTTTACTCCCTCCCCAGCAGGGTGTTATCCTCAACACATTGCTG
TACATGTCCTCAGCACCTCCAGCAGGGTGACCTAGCAAGCTCTCAGTTTAAAGACCCACTCCAG
GGGCTTGCAAGCACCCACCAGGCTCTTAGGCACATAATAGCCCAACCCTTCCCATTTCTACACT
ATATGCTTTGGCTGTCTGAAGCTGGGACCCAAGTTTCCTCTTGGCAGTTATGATTCCTCACGAC
AGAACTAAGTGTGTCTATGCCTACCTCCTAGGGACTGACCCGAGATCTATCATACCCTCTCCCA
AGGTTCCCAATAGGATTTGGGAGACAGTACAATCCTAGTCTCAATTTTGACTTAATTGTATTTG
GTAGCTGTAGATACACGGGGCATTTTTTTTTTCTTGTGCAGATGAATCCCTGAGGGCCAAGTAG
GCACTGCTTAACTCAGTGGCCTGCCTACTTCTGACTGCTCCTCACCTGGCTCTGGTTATAGTGG
GGCACTTCTCTCTCAGACCTTTATATCTGGGCAGCCATTGCTGCCAGCCCTGCTGGAGAGTCTT
TCCTCTGGAGTGAATCCTTCCAGGAAATACTCCTGCCCAGAGACAGGTTTCTTCTTCATTCCCA
GATCCTGCTGGCTGCTGATTGATTAACCTGGTATGGATGTGCAACAATGCTAGTGTTTTAACCT
CTGGGTTTTTTTCCCCTGTCTCCAACACACAAGTGTCCATAAGGCATAGCCAGGAAGGTGCCAC
CTCAGCAAGTGTGAGTTTTTAAAACAGCTGCCATTTGATTTATAGAGCAAAAATCTTTATGTAA
CTTTTTTCAATTTTTGTGGTTTTAGGGGCATGTTCTTTTAGGGTTTTTTTGTTTTTGTTTTTGT
CTTTGCAAATTTTATGTTTGGATATTTTACCTCCAAATGTACTGTGTGTGTGCTGAGAAAAATC
AGATCCTCTGTCTGGGACTGAAGTTTCAGGTGGTTGTAGCTTCAATGTGGGTACTAGGAATGGA
GCCAGGAACCTGTTAAGAGTAGCCAGTGCTCTTAATTACTGAGCCATCTCTCCAGCCTTTTAAA
AAAAGGTTCTAAAATACCTGTTCCTGGAGCAACAAGGTTTTAAACACTTGCAACAGGAACCAAA
GTCCAGAGTCTGGACCTAGGTTTACTGGAGTTGTCAGGCAGCTGGAGCATCATCATGTGATCTA
CTGGCTCTGCCTTCTCCACGTTGGCCCTCTTCCTCCTGTGTGCGCCTCCACCTTACCTTCTTAC
CCTCATGTGTCCAGCAGAGTCTGTACAGCTCTTAGTACCCACAGACATGATTAGAAAGTTCAGC
AATCTTAACACTGATGATTTCATAAGTTGTGCTTGTTACTAACCGGCCTCAGGAACTTCTGGCC
TGCAGTAGACAGAGGTTCACAGGAAGCTGTACTGGCTGAGGTTCCTAAGAGGCACAGCATCTCC
TAAGTCCTGTGTGTACTTAGCCAAAGTGGAGGTAGAGAGCCATGCTTAAGGGACTCTGACAAAA
TGTTGAGAATACTCAACAGGAAACTGCTCCACAGTGAAAGAACGCCTTTAAAAAAAAAAAAAAA
AAACCCAAAACAACAAAAAGCCCAAACCAACCCCCCCACACACCTGCAAACCCAAACAATAACA
AAAAACCCAGCCAAATTAAAGAGACCACTAAGTGTTTAACTCTGACATGAGACATCCAGAAAAA
ATGCACTAGCCATATCAGGGCCCTGATGTGAAAGAGCTTACTGAGAAAGATGAATATGGTGGTT
CACTCAGTGACTTGGATAGTAAGTCTCACGATTTATATGGTAGGCTTCATTAGTGAACAACTAC
CCTAGCTCAAAGCTGTGTTTTGTTTTGAGGGCCCTGTTTCCACCTTTCGAGCATTAGTTTATTT
TTATTAACTTATTTATAGACGGAGTCTTGCTATATAGACCTGGCTGGTCTGAACTCTTATGTTG
GCCTCAAACTAGTGTTCTGCCTATCTCTGCCTCCCAAGTCCTGGGATTAAGGATGTGTACCACC
CACATCTGGCTGTTTTTTGAAGGATCACAATCAGGACAAAATTCTCCATATGTGTTTGAGGAAT
GAGACATTTACTGCTTTATAGGAAATATATTTTATACTCAAGGGACGCAGTTTGCTATTGGAAC
ACTTTCTCAGCTATGCATGAAATCTTCCATTTAGTCCTCAGGTTAAATATTATATTTATACATC
ATATCTTAAGGTATTAGGACAGCCTGGTGAGCCACACCTACAATGTCAGCACTGGAGAGGCTGA
AGTAGGGGATCAGAGGTTCAAGTCTAGTCCACCAGAAGACTGACTCAAAACAAGTATTTTTTAA
TAGCCTTGCCTAGGGTTAAGATATTAACCTCAGTGGTAGAATGCTTGCCTAGCTGTGTGAGGTT
CTGAGTTTGATCCTAAGAACTTCCAAGTTTTTTCCTTTAGAGCATCAAGTAGCCTAGAATGTTT
ATTCATTTTAAAGAAAAAAAATTAAATTTGGGGAGAAGAGCTCAGCAAATCTTCCATTTAAATT
ATAAGTAATAAAATGTAGGGAGGTTTTTACATTAAAAAAGAAAAGATATATGTGTCCTTGAATT
CCCTCCTGTTCCCCAAAGATAGGAAGTGTGGCTTCTAAGCTTGATACTCTGAAGAAAGCAGTGT
CTAATGTCCTAGTCTAATGTTCTGGGTCCAGCAGTGGGTTAGGTGACAGACAGAGGCCAGGTAG
TATGCAGTCAGCTTTATTGTTTGCTTGAATAGATTCCTGCTCTGTTCCTATTACCACCCATAGT
GCTGTGTGGGAGGAAAAAAACCTCACCTTCCAGATTGTAACTGCTGTCTGGTGACACCCTCAGG
GTAGTAGGATGGGCTTTAGTGGGTGCTCATACCCACTTCTCAGCCATCTCAGCACTGACAATCC
TAGGAGCAACAAGTCTCATGGCAATCGTGGACACAATCGGTCAGGGTCCCTGCTTCACATATCA
GCATCCTACTCTCTCTGCTTAGCAAACGGATGCTCTTTACCCATTTTCCCAGAGGAGAATGGCT
GGGCTGTGCTTTTCCATCAGGTAGGTACTTCTAGTAAAATTTGTCAGGCTCCTGAGTTCCCATC
CTTGGCATCCTGTAAATCAAGACCTTTACTGAAGAGGCCTGTCCCCTCTGGCAATAGGGGACAA
ACTCAGAAGGCCAGGCAGTTACATGCTCATTGCCACAGTCCCAATCAAGAGGTCTACTCTGGCT
TCCCCTCTTTCCCAGCTCCTTGAGAGTGTTGGTGATAACTCAGGGCTGTTTAACCACACCTTCG
TCTCTCTAAAAACAAAACCTTGACATAACAATAACCTGGAAAATACTTAGTTCACCAAAACCAT
TTATTTTTAAGCCATGGTTAACCTTACAATCTTAATGAAGCAATCATAGGTCATGTGACTTTGG
AAATAGGAATGCTACCCCAGTCTCAGCCTTTAGCAGGCCTGGAATACAGCTTGGTGTAGTGCTT
GCATAGCACATGTGAGGGCCTGGGTTCAATAAAAAAGACCCAATCTTCTGAGTATCTTCTGGCT
TGTTTATATGATAACCTCAAGTCAGGTACACTACAGATAGAAACTGGTCCTGACCCTGAGCTAC
AGTACCAAGGCTTTGGCTACCTCAGATTTGTGATGCAGTCCAAAATTCATGAAGAGGCACCCCC
CCCCAAGTTAATAA

hide sequence

RefSeq Acc Id:

XM_039107345 ⟹ XP_038963273

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,840,764 - 117,846,286 (+)	NCBI
mRatBN7.2	4	116,281,337 - 116,292,371 (+)	NCBI

RefSeq Acc Id:

XM_039107346 ⟹ XP_038963274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,838,761 - 117,843,252 (+)	NCBI
mRatBN7.2	4	116,281,179 - 116,285,525 (+)	NCBI

RefSeq Acc Id:

XM_039107347 ⟹ XP_038963275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	117,838,761 - 117,843,252 (+)	NCBI
mRatBN7.2	4	116,281,179 - 116,285,525 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032857	(Get FASTA)	NCBI Sequence Viewer
	XP_006236802	(Get FASTA)	NCBI Sequence Viewer
	XP_038963273	(Get FASTA)	NCBI Sequence Viewer
	XP_038963274	(Get FASTA)	NCBI Sequence Viewer
	XP_038963275	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07648	(Get FASTA)	NCBI Sequence Viewer
	EDL91169	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000084218
	ENSRNOP00000084218.1
	ENSRNOP00000093402
GenBank Protein	P81799	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001032857 ⟸ NM_001037768

- UniProtKB:

Q32Q91 (UniProtKB/Swiss-Prot), P81799 (UniProtKB/Swiss-Prot), A6IAP9 (UniProtKB/TrEMBL), A0A8L2ULG6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAALYGGVEGGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKAGVDP
LVPLRSLGLSLSGGEQEDAVRLLMEELRDRFPYLSESYFITTDAAGSIATATPDGGIVLISGTG
SNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQAMFNYF
QVPDRLGILTHLYRDFDKSKFAGFCQKIAEGAQQGDPLSRFIFRKAGEMLGRHVVAVLPEIDPV
LFQGELGLPILCVGSVWKSWELLKEGFLLALTQGREQQAQNSFSSFTLMKLRHSSALGGASLGA
RHIGHHLPMDYSVNAIAFYSYTF

hide sequence

RefSeq Acc Id:	XP_006236802 ⟸ XM_006236740
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AJS1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAALYGGVEGGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKAGVDP LVPLRSLGLSLSGGEQEDAVRLLMEELRDRFPYLSESYFITTDAAGSIATATPDGGIVLISGTG SNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQAMFNYF QVPDRLGILTHLYRDFDKSKFAGFCQKIAEGFVPRGAWPPHSVCGLSVEELGATEGRLSPGTDA GPRATGTELLLQFHPDEVEALFCTGRGQPGGQAHWTPPSHGLQRQCHCLLFLYLLGAAPLPIQP TLSVGRFLFFKNT hide sequence

Ensembl Acc Id:

ENSRNOP00000039247 ⟸ ENSRNOT00000042875

RefSeq Acc Id:	XP_038963274 ⟸ XM_039107346
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038963275 ⟸ XM_039107347
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038963273 ⟸ XM_039107345
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000093402 ⟸ ENSRNOT00000118649

Ensembl Acc Id:

ENSRNOP00000078861 ⟸ ENSRNOT00000100970

Ensembl Acc Id:

ENSRNOP00000084218 ⟸ ENSRNOT00000108444

Ensembl Acc Id:

ENSRNOP00000102561 ⟸ ENSRNOT00000146359

Protein Domains

ATPase BadF/BadG/BcrA/BcrD type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P81799-F1-model_v2	AlphaFold	P81799	1-343	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693189

Promoter ID:

EPDNEW_R3712

Type:

initiation region

Name:

Nagk_1

Description:

N-acetylglucosamine kinase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	115,474,045 - 115,474,105	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305057	AgrOrtholog
BioCyc Gene	G2FUF-43986	BioCyc
BioCyc Pathway	PWY-6517 [N-acetylglucosamine degradation II]	BioCyc
BioCyc Pathway Image	PWY-6517	BioCyc
Ensembl Genes	ENSRNOG00000013911	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000108444	ENTREZGENE
	ENSRNOT00000108444.1	UniProtKB/Swiss-Prot
	ENSRNOT00000118649	ENTREZGENE
Gene3D-CATH	3.30.420.40	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7121526	IMAGE-MGC_LOAD
	IMAGE:7930414	IMAGE-MGC_LOAD
InterPro	ATPase_BadF	UniProtKB/Swiss-Prot
	ATPase_NBD	UniProtKB/Swiss-Prot
	NAGK_prok_euk	UniProtKB/Swiss-Prot
KEGG Report	rno:297393	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124788	IMAGE-MGC_LOAD
	MGC:95011	IMAGE-MGC_LOAD
NCBI Gene	297393	ENTREZGENE
PANTHER	N-ACETYL-D-GLUCOSAMINE KINASE	UniProtKB/Swiss-Prot
	PTHR12862	UniProtKB/Swiss-Prot
Pfam	BcrAD_BadFG	UniProtKB/Swiss-Prot
PhenoGen	Nagk	PhenoGen
RatGTEx	ENSRNOG00000013911	RatGTEx
Superfamily-SCOP	SSF53067	UniProtKB/Swiss-Prot
UniProt	A0A8I6AJS1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G2G4_RAT	UniProtKB/TrEMBL
	A0A8L2ULG6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LCR5_RAT	UniProtKB/TrEMBL
	A6IAP9	ENTREZGENE, UniProtKB/TrEMBL
	NAGK_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q32Q91	ENTREZGENE
UniProt Secondary	Q32Q91	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Nagk	N-acetylglucosamine kinase	Nagk_predicted	N-acetylglucosamine kinase (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Nagk_predicted	N-acetylglucosamine kinase (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways