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Gene: Baz2a (bromodomain adjacent to zinc finger domain, 2A) Rattus norvegicus

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Symbol:

Baz2a

Name:

bromodomain adjacent to zinc finger domain, 2A

RGD ID:

1305037

Description:

Predicted to enable several functions, including DNA binding activity; histone H4K16ac reader activity; and histone binding activity. Predicted to contribute to RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to be involved in DNA methylation-dependent constitutive heterochromatin formation and negative regulation of transcription by RNA polymerase I. Predicted to act upstream of or within rDNA heterochromatin formation. Predicted to be located in nucleolus. Predicted to be part of NoRC complex and chromatin silencing complex. Predicted to be active in rDNA heterochromatin. Orthologous to human BAZ2A (bromodomain adjacent to zinc finger domain 2A); INTERACTS WITH 17beta-estradiol; 4,4'-sulfonyldiphenol; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bromodomain adjacent to zinc finger domain protein 2A; LOC304601

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,107,377 - 1,145,507 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	1,107,796 - 1,145,507 (+)	Ensembl				GRCr8
mRatBN7.2	7	523,204 - 560,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	523,265 - 560,659 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	3,286,873 - 3,319,479 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,162,887 - 5,195,491 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,464,102 - 5,496,679 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,518,267 - 2,548,840 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,529,077 - 2,547,062 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	2,496,857 - 2,528,058 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	1,389,681 - 1,421,170 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	407,644 - 438,253 (+)	NCBI		Celera
RGSC_v3.1	7	1,400,490 - 1,420,646 (+)	NCBI
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

C60 fullerene (EXP)

cadmium dichloride (EXP)

caffeine (ISO)

calcitriol (ISO)

choline (ISO)

cisplatin (ISO)

coumarin (ISO)

coumestrol (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

disodium selenite (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

glyphosate (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methidathion (ISO)

nitrofen (EXP)

ozone (ISO)

perfluorooctanoic acid (ISO)

sodium arsenite (EXP,ISO)

sunitinib (ISO)

testosterone (ISO)

titanium dioxide (ISO)

tributylstannane (EXP)

triptonide (ISO)

triticonazole (EXP)

tungsten (ISO)

urethane (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (ISO)

DNA methylation-dependent constitutive heterochromatin formation (ISO)

DNA-templated transcription (IEA)

heterochromatin formation (ISO)

negative regulation of transcription by RNA polymerase I (ISO)

rDNA heterochromatin formation (ISO)

RNA polymerase I preinitiation complex assembly (IEA)

Cellular Component

chromatin silencing complex (ISO)

NoRC complex (ISO)

nuclear speck (ISO)

nucleolus (ISO)

nucleus (IEA,ISO)

rDNA heterochromatin (IBA,ISO)

Molecular Function

chromatin-protein adaptor activity (ISO)

DNA binding (IEA,ISO)

histone binding (ISO)

histone H4K16ac reader activity (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA binding (ISO)

RNA polymerase I core promoter sequence-specific DNA binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11532953	PMID:12198165	PMID:12368916	PMID:16085498	PMID:16678107	PMID:18600236	PMID:19578370	PMID:20168299	PMID:22368283

Genomics

Comparative Map Data

Baz2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,107,377 - 1,145,507 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	1,107,796 - 1,145,507 (+)	Ensembl				GRCr8
mRatBN7.2	7	523,204 - 560,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	523,265 - 560,659 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	3,286,873 - 3,319,479 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,162,887 - 5,195,491 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,464,102 - 5,496,679 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,518,267 - 2,548,840 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,529,077 - 2,547,062 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	2,496,857 - 2,528,058 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	1,389,681 - 1,421,170 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	407,644 - 438,253 (+)	NCBI		Celera
RGSC_v3.1	7	1,400,490 - 1,420,646 (+)	NCBI
Cytogenetic Map	7	q11	NCBI

BAZ2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	56,595,596 - 56,638,318 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	56,595,596 - 56,636,913 (-)	Ensembl			hg38	GRCh38
GRCh37	12	56,989,380 - 57,030,143 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	55,275,647 - 55,316,430 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	55,275,646 - 55,316,417	NCBI
Celera	12	56,642,037 - 56,681,875 (-)	NCBI		Celera
Cytogenetic Map	12	q13.3	NCBI
HuRef	12	54,028,733 - 54,069,441 (-)	NCBI		HuRef
CHM1_1	12	56,956,914 - 56,997,696 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	56,563,591 - 56,604,975 (-)	NCBI		T2T-CHM13v2.0

Baz2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	127,927,453 - 127,965,172 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	127,927,446 - 127,965,172 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	128,091,370 - 128,129,303 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,091,577 - 128,129,303 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	127,529,839 - 127,566,359 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	127,511,956 - 127,529,702 (+)	NCBI		MGSCv36	mm8
Celera	10	130,487,519 - 130,524,047 (+)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	76.4	NCBI

Baz2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	4,151,886 - 4,170,641 (-)	Ensembl
ChiLan1.0	NW_004955458	4,149,610 - 4,186,647 (-)	NCBI	ChiLan1.0	ChiLan1.0

BAZ2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	37,690,399 - 37,733,952 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	37,687,165 - 37,727,286 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,274,240 - 32,313,839 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	32,529,106 - 32,568,619 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	32,529,634 - 32,566,248 (+)	Ensembl			panPan2	panpan1.1

BAZ2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	834,018 - 868,817 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	836,465 - 863,874 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	897,471 - 931,995 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	846,002 - 862,650 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	10	820,274 - 854,983 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	1,063,450 - 1,098,153 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	1,187,189 - 1,221,915 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Baz2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	57,921,173 - 57,955,291 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	914,818 - 949,101 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	914,944 - 949,057 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BAZ2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,936,260 - 21,983,032 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	21,932,527 - 21,983,033 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	23,610,949 - 23,657,360 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BAZ2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	52,545,183 - 52,585,822 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	52,547,789 - 52,566,799 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	193,390,934 - 193,431,694 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Baz2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624802	11,410,424 - 11,448,810 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Baz2a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	155,577,561 - 155,609,253 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Baz2a
199 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	46
Count of miRNA genes:	42
Interacting mature miRNAs:	45
Transcripts:	ENSRNOT00000046048
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH69868

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	559,944 - 560,104 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	2,549,817 - 2,549,976	NCBI	Rnor6.0
Rnor_5.0	7	2,529,035 - 2,529,194	UniSTS	Rnor5.0
RGSC_v3.4	7	1,422,147 - 1,422,306	UniSTS	RGSC3.4
Celera	7	439,230 - 439,389	UniSTS
Cytogenetic Map	7	q11	UniSTS

BI291455

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	527,268 - 527,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	2,517,155 - 2,517,354	NCBI	Rnor6.0
Rnor_5.0	7	2,495,745 - 2,495,944	UniSTS	Rnor5.0
RGSC_v3.4	7	1,388,569 - 1,388,768	UniSTS	RGSC3.4
Celera	7	406,532 - 406,731	UniSTS
Cytogenetic Map	7	q11	UniSTS

RH124269

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	558,635 - 558,897 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	2,548,508 - 2,548,769	NCBI	Rnor6.0
Rnor_5.0	7	2,527,726 - 2,527,987	UniSTS	Rnor5.0
RGSC_v3.4	7	1,420,838 - 1,421,099	UniSTS	RGSC3.4
Celera	7	437,921 - 438,182	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079383 ⟹ ENSRNOP00000071731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	1,112,823 - 1,142,221 (+)	Ensembl
mRatBN7.2 Ensembl	7	528,381 - 557,625 (+)	Ensembl
Rnor_6.0 Ensembl	7	2,529,077 - 2,547,062 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107364 ⟹ ENSRNOP00000089740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	1,107,796 - 1,145,507 (+)	Ensembl
mRatBN7.2 Ensembl	7	523,265 - 560,659 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111243 ⟹ ENSRNOP00000079756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	1,112,823 - 1,145,507 (+)	Ensembl
mRatBN7.2 Ensembl	7	528,381 - 560,659 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126073 ⟹ ENSRNOP00000098645

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	1,112,838 - 1,145,507 (+)	Ensembl

RefSeq Acc Id:

NM_001107158 ⟹ NP_001100628

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,112,823 - 1,145,507 (+)	NCBI
mRatBN7.2	7	528,224 - 560,911 (+)	NCBI
Rnor_6.0	7	2,518,267 - 2,548,840 (+)	NCBI
Rnor_5.0	7	2,496,857 - 2,528,058 (+)	NCBI
RGSC_v3.4	7	1,389,681 - 1,421,170 (+)	RGD
Celera	7	407,644 - 438,253 (+)	RGD

Sequence:

show sequence

GGGAGAAGCGAGCCCCGACCCGGCCGGACGCGGTCGCCTCAGAAATGGAGGCAAACGACCATTT
TAATTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCAGGG
GAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAAGTTTGAATGGGG
ATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGC
TCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAAC
TACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAAT
ACCCTGGGGGGCAATACCCGCTCAACGGTATCCTTGGGGGCAGCCAACAACCTTCATCCCCAAG
TCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCGTG
GGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGACCAGAATTTTGAGGTGATGC
CCAATGGACCCCCAAGTTTTTTCACCTCCCCACAGACTTCTCCAATGCTGGGGTCTAGTATCCA
GACCTTTGCACCTTCCCAGGGTGTAAGCAGTGACCTCCATCCTGATGAGGCAGCGGAAAAGGAG
CTGACCTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAACTGGAGGAAGAGC
AGCCAGAACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTGCACCAAGA
AGTCTCGGTCCTGGTCCCTGACCCCACAGTGAGCTGTCTGGATGATCCTTCACATCTTCCTGAG
CAACTGGAAGACACTCCAATCCTCAGTGAAGACTCCCTCGAGCCCTTTGACTCTCTGGCAGCAG
AGCCAGTGAGTGAAGGACTTTATAGTATAGATGACACAGAGCTGATGGGTACAGAAGACAAGCT
CCCTCTGGAGGACAACCCTGTGATCTCTGCCCTCGATTGCCCTGCTCTCAGTAATGCTAATGCC
TTCAGTCTCCTGGCAGAGGACAGCCAAACATCAGCCTCCATTTTTGTCAGTCCTACCTCCCCAC
CTGTCTTAGGGGAGTCTGTCTTGCAAGATAATAGCTTTGGACTGAACAGTTGCAGTGACTCTGA
ACAGGAAGAAATGGAGACCCAGTCTTCAAACTTCCAACGTTCCTTGACTGAGCCAGCCCCCGAC
CAGCCACCTAGTATTCAGCTACATCCAGCAGCCTCACCAACAGCCTCCCCAGTAGCCTCCTTGG
CAGCATCTGCAGAAATCTCTCCAGCCGCATCTCCAGTAGCATCCTCGCCTATCCCTCCTGAAGT
CTTCCCAGCAGTCTCTCCAGCTTCCTCACCTGCTCTCCCAGCCATCTCTTTGGAAGCTTCTATG
GCGGCTCCCGTGACTTCTCCTCCAGGTTCCCCTGAGCCTTCTGCACCCGCTGCCTTGCAGACAG
TCTCCACAGCTAGTAAAGATGGTAGCAGTGCCCCTGGAGCTTGTGCTGGTCAGGAAGAGATGGC
TGGAGAAGCAGTTGCAGGATCTGGGATTGGTGATGTACTGAAGAGACATATTGCTACCCCAGAA
GAAGTTCGTCTTCCCCTCCAACATGGGTGGCGAAGAGAAGTGCGCATTAAGAAGGGCAGCCATC
GGTGGCAGGGGGAGACTTGGTATTATGGCCCCTGTGGGAAGAGAATGAAGCAATTTCCAGAAGT
TATCAAGTACCTGAGCCGAAATGTGGTGCACAGTGTCCGCCGAGAGCACTTCAGCTTCAGCCCC
CGAATGCCTGTTGGAGATTTCTTTGAAGAAAGAGATACACCAGAGGGCTTGCAATGGGTCCAGT
TGTCAGCAGAGGAGATTCCTTCCAGGATTCAAGCCATCACTGGCAGACGAGGCCGACCTCGAAA
CAGTGAGAAGAGCAAGGACAAGGACAAGGAGGTCCCCAGAGTGAGGCGGGGCCGGGGCCGGCCT
CCTAAGGTCCAAGTGCCTGGACTGCTGACTGAAACGGACAACCGACTTCCAAAAAAACTGGAAA
CCCAAGAAACACTGAGTGAGGAAGATAAAGCAAAGATGACTAAGAGCAAAAAGAAGGTGAGGCA
GAAGGTTCAGCGGGGAGAGAGTCAGCCTCCTGTCCAAGGGCAGGCCAGAAACAAGAGGAAGCAA
GACACCAAGAACTCAAAGCCGAAGGACACTAAGAGGAAGTTCAAGGCTGAGAAAGAGAAGATGA
AGACAAAGCAGGAGAAGCTGAAGGAAAAGGTGAAGAGGGAAAAGAAAGAAAAGGTAAAAGTGAA
GGGAAAGGAAGAGCCCAGAGCCAGGCCATCCTGTAGAGCTACACAGAGGCGACTGGAGGAGCGG
CAGAGGCAGCAGGTCATCTTGGAGGAGATGAAGAAGCCCACGGAGGATATGTGTCTGGCTGACC
ACCAGCCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGCAGGGCTTTCTCAGA
TTGCTTGACCATCGTGGAGTTCCTGCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAA
GATGTTCCTAGTCTCGGAGTCCTGCAGGAGGGGCTCTTATGTCAAGGTGACAGCTTGGACAAAG
TGCAGGACCTGCTGGTCCGGCTCCTGAAGGCTGCACTTCACGATCCTGGTTTGCCCTCCTACTG
TCAGTCCCTAAAGATCCTGGGGGAGAAGGTGTCAGAGATCCCATTGACCAGAGACAATGTGTCT
GAGGTACTGCGCTGCTTCCTCATGGCATACAGAGTGGAGCCGTCCTTCTGTGACAGTCTGCGAA
CTCAGCCTTTTCAGGCCCAGCCGCCTCAGCAGAAGGCTTCTGTCCTAGCCTTCCTTGTGCATGA
GCTCAACGGCTCCACCATTGTCATCAATGAGATTGACAAGACTCTGGAGAACATGTCTAGCTAC
AGGAAAAACAAATGGATTGTTGAAGGCCGACTCCGGAGACTGAAAACTGCCCTAGCCAAGCGAA
CTGGGCGGCCTGAAGTTATGATGGAAGGGGTAGATGACAGCCTGGGACGGAGGCGCAGCTCTCG
GATCATGGAGGAGACCAGTGGCATAGAAGAGGAGGAAGAGGAGGAAAATACAGTAGCTGTTCAT
GGCCGCAGGGGTCGAAGAGATGGGGAGGTTGATGTTGCAGCATCTAGCATCCCAGAGCTAGAGC
GCCAGATAGAGAAACTCAGTAAGCGTCAGCTCTTCTTTAGAAAAAAACTGCTTCACTCGTCCCA
GATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTTTAGACGCCATTACTGGGTCTTACCGTGT
CTTGCTGGTATCTTTGTGGAAGGATCAGAGGGGAGTGCAGTTACTGAAGATGGAATAAAGCAAG
AAACCGAGTCCTTGATGGAAGCAGTCACTTCAACGCCCAGCTCTGCCCAAGTCTCTGTAAAGAG
GGAGCCAACGGGCTCTACCACCTCTACTTCTCCTGCCCGGTCCCGAGGGCGACCTCGAAAACCT
AAGCCAGGGTCTCTGCAGCCTCAGCACCTTAAGTCCACCATTAGAGAACATGATTCAGAACAAG
CCCAGTCTCAAGCTCACCCAAGAGCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCCTCAGCCTCA
GCCTCAGACTCCTATCCAGCCTCATCTTCAGTCAAGTAACGGGTTCCTAGAACCGGAAGGTTCC
CCTTTCTCTCTGGGTCAGAGCCAGCACGACCTCAGCCAGTCTGCCTTCCTGTCTTGGCTGAGCC
AGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCTGATAGCAGCCCCGGAAA
ATTAGACTCTGCTCCATCTCAGTCCTTAGAGGAGCCAGAGCCTGATGAGACACAACCCTGCCCT
GGTCCTCAAGGTCCGTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCAC
CTCCTGCAGTGTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCCTGCCTCCTCTAAACCAAT
GAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGA
GGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGAC
AACCAAAACGGAGAGGGAGACCTCCTAGCAAGTTCTTCAAGCAGGTGGAGCAACATTACTTAAC
CCAGCTGACAGCCCAGCCTATCCCCCCTGATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCT
GAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACA
AACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTGACCCCAT
CTTTGAGCCCAGTCAGCTGCCTGCCTTGGAAGAAGGAATTATGAGTTGGTCCCCCAAAGAGAAA
ACTTTCGAGACAGACCTGGCTGTGCTTCAGTGGGTGGAGGAGCTAGAACGGCGAGTCGTCCTCT
CTGATCTGCAGATTCGGGGCTGGACATGCCCTAGTCCAGACTCCACCAGAGAAGACTTGACCTA
CTGTGAGCATCTGCCTGACTCTCAGGAGGACATCCCTTGGAGGGGTCGGGGCAGGGAAGGAGCA
GTGCCTCAGCGGCAGAACACCAACCCTCTGGACCTCGCTGTGATGCGATTGGCTGTTCTGGAGC
AAAACGTGGAGCGGCGGTACTTGCGGGAGCCTTTGTGGGCAGCTCACGAGGTGGTAGTGGAGAA
GGCCCTCCTGAGCACACCCAGTGGTGAGCCTGACAGTGCCACGACTGAGATATCCTATGAGATC
ACGCCTCGGGTCCGAGTCTGGCGGCAGACACTTGAGAGGTGCCGCAGTGCAGCCCAAGTGTGCC
TGTGCGTGGGCCAGCTGGAAAGGTCCATCGCCTGGGAGAAGTCTGTCAACAAAGTGACCCTGTC
TGGTCTGGTCGGAAGGGTGACAATGACGAGTTTCTCCTGCAGTCGTGCACGATTCCGACGGTAA
ACCACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTCCAGAAGGAGACTGGTTCTGTGCTGT
CTGTCTGGCCCAGCAGGTAGAGGAAGAATACACTCAGAGGCCTGCTTCTCTAAAACGAGGCCAG
AAGCGGAAAAGTAGTTTTCCACTGACCTTCACAGAAGGTGACAGCCGGCGGCGGCGGCGGCGGC
GAAGGATGTTGTCAAGGAATAGAGAAAGCCCAGCAGTGTCTCAGTACCCAGAAGACAGGCTATC
TCCCTCCAAAAGACGGCGACTTTCGATGAGAAGCCACCACAGTGATCTCACATTTTGCGAGATC
ATCCTAATGGAGATGGAGTCCCATGATGCAGCCTGGCCTTTCCTAGAACCTGTGAACCCCCGCT
TGGTGAGTGGGTACCGGCGCGTCATCAAGAACCCTATGGACTTTTCCACCATGCGAGAACGGCT
GCTCCGGGGAGGGTACACTAGCTCAGAGGAGTTTGCAGCTGATGCCCTGCTGGTTTTTGACAAC
TGCCAGACCTTCAATGAGGATGACTCTGAAGTGGGCAAGGCTGGGCACATCATGCGCCGCTTCT
TTGAGAGCCGCTGGGAGGAATTTTATCAGGGAAAACAGGCCAATCTATGAGGCAAGGAAGGTGG
GAGTCACCTTGTGGCATCTTCTCCAACCTTCCAAACAAAAACCTGCCGTTCTCACCTGCTGATG
GCTGCCCTGGGTGGACTCAAGTCAGACAATGCTGATTTTTGACTGCCCTCGGCAGCACCCACAT
CCTCTCCTTCCTAATCCCTTTTCTCCCTCCTCTTGCTCCTCAAATAAGAGATGCAGAGATGAGG
TCCTTCTGGACAGAAAGCCAAAAAAGAAAGAATTTTCCTGTTTTTTCTCCCTGAGTTACAATGG
AGAGAGGCAAAGAAGCCCTCCCTCCTTGTCCTAGCCTCCTCCCTTCCCTTTCCATGATGCCTCA
GCTTCCTGGGGTTATTTAACAATAGCAATAGTTCTAGTGAATGTGTGAAACCGAGAAACACTCT
GTACTGTGTGCGGACCCGCAGTGACGGCCAGTAAAGTGGACTTAACTCCCAGGTGTGTCGAGCC
GGACACCGGGCCCTGAACATGCTGCTTTTGTCTGTGTTGAGTCCTCCCTCCTCCTCTAACTC

hide sequence

RefSeq Acc Id:

XM_039078958 ⟹ XP_038934886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,377 - 1,145,507 (+)	NCBI
mRatBN7.2	7	523,277 - 560,911 (+)	NCBI

RefSeq Acc Id:

XM_039078959 ⟹ XP_038934887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,380 - 1,145,507 (+)	NCBI
mRatBN7.2	7	523,277 - 558,923 (+)	NCBI

RefSeq Acc Id:

XM_039078960 ⟹ XP_038934888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,380 - 1,145,507 (+)	NCBI
mRatBN7.2	7	523,278 - 560,902 (+)	NCBI

RefSeq Acc Id:

XM_039078961 ⟹ XP_038934889

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,112,483 - 1,145,507 (+)	NCBI
mRatBN7.2	7	527,884 - 560,902 (+)	NCBI

RefSeq Acc Id:

XM_039078962 ⟹ XP_038934890

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,810 - 1,145,507 (+)	NCBI
mRatBN7.2	7	523,204 - 560,902 (+)	NCBI

RefSeq Acc Id:

XM_039078965 ⟹ XP_038934893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,810 - 1,145,507 (+)	NCBI
mRatBN7.2	7	523,204 - 560,902 (+)	NCBI

RefSeq Acc Id:

XM_039078966 ⟹ XP_038934894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,109,164 - 1,145,507 (+)	NCBI
mRatBN7.2	7	524,562 - 560,902 (+)	NCBI

RefSeq Acc Id:

XM_039078968 ⟹ XP_038934896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,129,787 - 1,145,507 (+)	NCBI
mRatBN7.2	7	545,184 - 560,902 (+)	NCBI

RefSeq Acc Id:

XM_063263394 ⟹ XP_063119464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,380 - 1,145,507 (+)	NCBI

RefSeq Acc Id:

XM_063263395 ⟹ XP_063119465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,107,380 - 1,145,507 (+)	NCBI

RefSeq Acc Id:

XM_063263396 ⟹ XP_063119466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,113,062 - 1,145,507 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100628	(Get FASTA)	NCBI Sequence Viewer
	XP_038934886	(Get FASTA)	NCBI Sequence Viewer
	XP_038934887	(Get FASTA)	NCBI Sequence Viewer
	XP_038934888	(Get FASTA)	NCBI Sequence Viewer
	XP_038934889	(Get FASTA)	NCBI Sequence Viewer
	XP_038934890	(Get FASTA)	NCBI Sequence Viewer
	XP_038934893	(Get FASTA)	NCBI Sequence Viewer
	XP_038934894	(Get FASTA)	NCBI Sequence Viewer
	XP_038934896	(Get FASTA)	NCBI Sequence Viewer
	XP_063119464	(Get FASTA)	NCBI Sequence Viewer
	XP_063119465	(Get FASTA)	NCBI Sequence Viewer
	XP_063119466	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84888	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071731.2
	ENSRNOP00000079756
	ENSRNOP00000079756.1
	ENSRNOP00000089740
	ENSRNOP00000089740.2
	ENSRNOP00000098645
	ENSRNOP00000098645.1

RefSeq Acc Id:

NP_001100628 ⟸ NM_001107158

- UniProtKB:

A0A0G2K178 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEANDHFNFTGLPPAPAASGLKPSPSSGEGLYTNGSPMNFPQQGKSLNGDVNVNGLSTVSHTTT
SGILNSAPHSSSTSHLHHPNVAYDCLWNYSQYPSANPGNNLKDPPLLSQYPGGQYPLNGILGGS
QQPSSPSHNTNLRAGSQEFWANGTQSPVGLNFDSQELYDSFPDQNFEVMPNGPPSFFTSPQTSP
MLGSSIQTFAPSQGVSSDLHPDEAAEKELTSVVAENGTGLVGSLELEEEQPELKMCGYNGSVSS
VESLHQEVSVLVPDPTVSCLDDPSHLPEQLEDTPILSEDSLEPFDSLAAEPVSEGLYSIDDTEL
MGTEDKLPLEDNPVISALDCPALSNANAFSLLAEDSQTSASIFVSPTSPPVLGESVLQDNSFGL
NSCSDSEQEEMETQSSNFQRSLTEPAPDQPPSIQLHPAASPTASPVASLAASAEISPAASPVAS
SPIPPEVFPAVSPASSPALPAISLEASMAAPVTSPPGSPEPSAPAALQTVSTASKDGSSAPGAC
AGQEEMAGEAVAGSGIGDVLKRHIATPEEVRLPLQHGWRREVRIKKGSHRWQGETWYYGPCGKR
MKQFPEVIKYLSRNVVHSVRREHFSFSPRMPVGDFFEERDTPEGLQWVQLSAEEIPSRIQAITG
RRGRPRNSEKSKDKDKEVPRVRRGRGRPPKVQVPGLLTETDNRLPKKLETQETLSEEDKAKMTK
SKKKVRQKVQRGESQPPVQGQARNKRKQDTKNSKPKDTKRKFKAEKEKMKTKQEKLKEKVKREK
KEKVKVKGKEEPRARPSCRATQRRLEERQRQQVILEEMKKPTEDMCLADHQPLPDFTRIPGLTL
SSRAFSDCLTIVEFLHSFGKVLGFDLTKDVPSLGVLQEGLLCQGDSLDKVQDLLVRLLKAALHD
PGLPSYCQSLKILGEKVSEIPLTRDNVSEVLRCFLMAYRVEPSFCDSLRTQPFQAQPPQQKASV
LAFLVHELNGSTIVINEIDKTLENMSSYRKNKWIVEGRLRRLKTALAKRTGRPEVMMEGVDDSL
GRRRSSRIMEETSGIEEEEEEENTVAVHGRRGRRDGEVDVAASSIPELERQIEKLSKRQLFFRK
KLLHSSQMLRAVSLGQDRFRRHYWVLPCLAGIFVEGSEGSAVTEDGIKQETESLMEAVTSTPSS
AQVSVKREPTGSTTSTSPARSRGRPRKPKPGSLQPQHLKSTIREHDSEQAQSQAHPRAQPQPQP
QPQPQPQPQTPIQPHLQSSNGFLEPEGSPFSLGQSQHDLSQSAFLSWLSQTQSHNSLLSSSVLT
PDSSPGKLDSAPSQSLEEPEPDETQPCPGPQGPWFNFSAQIPCDAAPTPPPAVSEDQPTPSLQL
PASSKPMNTPGAANPCSPVQLSFTHLPGGGPKRLSGDSEEIPQSPTGLGQPKRRGRPPSKFFKQ
VEQHYLTQLTAQPIPPDMCSGWWWIRDPETLDVLLKALHPRGIREKALHKHLSKHKDFLQEVCL
QPLTDPIFEPSQLPALEEGIMSWSPKEKTFETDLAVLQWVEELERRVVLSDLQIRGWTCPSPDS
TREDLTYCEHLPDSQEDIPWRGRGREGAVPQRQNTNPLDLAVMRLAVLEQNVERRYLREPLWAA
HEVVVEKALLSTPSGEPDSATTEISYEITPRVRVWRQTLERCRSAAQVCLCVGQLERSIAWEKS
VNKVTLSGLVGRVTMTSFSCSRARFRR

hide sequence

Ensembl Acc Id:

ENSRNOP00000071731 ⟸ ENSRNOT00000079383

RefSeq Acc Id:	XP_038934890 ⟸ XM_039078962
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZP85 (UniProtKB/TrEMBL), A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934893 ⟸ XM_039078965
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZP85 (UniProtKB/TrEMBL), A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934886 ⟸ XM_039078958
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934887 ⟸ XM_039078959
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934888 ⟸ XM_039078960
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934894 ⟸ XM_039078966
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZP85 (UniProtKB/TrEMBL), A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934889 ⟸ XM_039078961
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZP85 (UniProtKB/TrEMBL), A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038934896 ⟸ XM_039078968
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000079756 ⟸ ENSRNOT00000111243

Ensembl Acc Id:

ENSRNOP00000089740 ⟸ ENSRNOT00000107364

RefSeq Acc Id:	XP_063119464 ⟸ XM_063263394
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119465 ⟸ XM_063263395
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A7X6 (UniProtKB/TrEMBL), A0A0G2K178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119466 ⟸ XM_063263396
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZP85 (UniProtKB/TrEMBL), A0A0G2K178 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098645 ⟸ ENSRNOT00000126073

Protein Domains

Bromo DDT MBD PHD-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305037	AgrOrtholog
BioCyc Gene	G2FUF-35392	BioCyc
Ensembl Genes	ENSRNOG00000053881	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000079383.3	UniProtKB/TrEMBL
	ENSRNOT00000107364	ENTREZGENE
	ENSRNOT00000107364.2	UniProtKB/TrEMBL
	ENSRNOT00000111243	ENTREZGENE
	ENSRNOT00000111243.2	UniProtKB/TrEMBL
	ENSRNOT00000126073	ENTREZGENE
	ENSRNOT00000126073.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.920.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	Methyl-cpg-binding Protein 2, Chain A	UniProtKB/TrEMBL
InterPro	AT_hook_DNA-bd_motif	UniProtKB/TrEMBL
	BAZ2A/B_Bromo	UniProtKB/TrEMBL
	Bromodomain	UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/TrEMBL
	Bromodomain_CS	UniProtKB/TrEMBL
	DDT_dom_superfamily	UniProtKB/TrEMBL
	DNA-bd_integrase-typ	UniProtKB/TrEMBL
	Methyl_CpG_DNA-bd	UniProtKB/TrEMBL
	TIP5	UniProtKB/TrEMBL
	WHIM1_dom	UniProtKB/TrEMBL
	WHIM2_dom	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:304601	UniProtKB/TrEMBL
NCBI Gene	304601	ENTREZGENE
PANTHER	PTHR45915:SF5	UniProtKB/TrEMBL
	TRANSCRIPTION INTERMEDIARY FACTOR	UniProtKB/TrEMBL
Pfam	Bromodomain	UniProtKB/TrEMBL
	DDT	UniProtKB/TrEMBL
	MBD	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
	WHIM1	UniProtKB/TrEMBL
	WSD	UniProtKB/TrEMBL
PhenoGen	Baz2a	PhenoGen
PRINTS	BROMODOMAIN	UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_1	UniProtKB/TrEMBL
	BROMODOMAIN_2	UniProtKB/TrEMBL
	DDT	UniProtKB/TrEMBL
	MBD	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000053881	RatGTEx
SMART	AT_hook	UniProtKB/TrEMBL
	BROMO	UniProtKB/TrEMBL
	DDT	UniProtKB/TrEMBL
	MBD	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	DNA-binding_integrase-type	UniProtKB/TrEMBL
	SSF47370	UniProtKB/TrEMBL
	SSF57903	UniProtKB/TrEMBL
UniProt	A0A0G2K178	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZP85	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7X6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LBX1_RAT	UniProtKB/TrEMBL
	A6KSA4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Baz2a	bromodomain adjacent to zinc finger domain, 2A	Baz2a_predicted	bromodomain adjacent to zinc finger domain, 2A (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Baz2a_predicted	bromodomain adjacent to zinc finger domain, 2A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD