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Gene: Pabpc4 (poly(A) binding protein, cytoplasmic 4) Rattus norvegicus

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Symbol:

Pabpc4

Name:

poly(A) binding protein, cytoplasmic 4

RGD ID:

1305015

Description:

Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be involved in RNA splicing and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to act upstream of or within myeloid cell development and regulation of mRNA stability. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Orthologous to human PABPC4 (poly(A) binding protein cytoplasmic 4); PARTICIPATES IN mRNA decay pathway; RNA degradation pathway; RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC298510; poly A binding protein, cytoplasmic 4; poly(A) binding protein, cytoplasmic 4 (inducible form); polyadenylate-binding protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PABPC4 (poly(A) binding protein cytoplasmic 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pabpc4 (poly(A) binding protein, cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pabpc4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PABPC4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HEYL (hes related family bHLH transcription factor with YRPW motif like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pabpc4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PABPC4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PABPC4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pabpc4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pabpc4 (poly(A) binding protein cytoplasmic 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PABPC4 (poly(A) binding protein cytoplasmic 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pabpc4 (poly(A) binding protein, cytoplasmic 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pabpc4 (poly(A) binding protein, cytoplasmic 4 (inducible form))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PAB1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PAB1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4612	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	pAbp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	pAbp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pab-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pab-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pab-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pabpc4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pabpc4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Related Pseudogenes:

Pabpc4-ps1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	140,847,835 - 140,864,089 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	140,848,225 - 140,864,087 (+)	Ensembl				GRCr8
mRatBN7.2	5	135,563,142 - 135,578,985 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	135,563,562 - 135,578,979 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	138,269,597 - 138,284,890 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	140,039,563 - 140,054,856 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	140,046,708 - 140,062,001 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	140,978,893 - 140,994,732 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	140,979,435 - 140,994,732 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	142,599,706 - 142,615,003 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	134,102,156 - 134,117,452 (+)	NCBI		Celera
RGSC_v3.1	5	142,604,839 - 142,620,228 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Disease Models (ISO)

lung adenocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium acetate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlormequat chloride (EXP)

chloropicrin (ISO)

chlorpyrifos (ISO)

clofibrate (EXP)

copper(II) sulfate (ISO)

Cuprizon (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

diuron (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

furan (EXP)

ivermectin (ISO)

L-ethionine (EXP)

methotrexate (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylparaben (ISO)

N-methyl-4-phenylpyridinium (ISO)

omeprazole (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

phenethyl isothiocyanate (EXP)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sodium dichromate (EXP)

tetrachloroethene (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (ISO)

trimellitic anhydride (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

myeloid cell development (ISO)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IEA)

regulation of mRNA stability (ISO)

RNA splicing (IEA)

Cellular Component

cytoplasm (ISO)

cytoplasmic stress granule (IBA,IEA,ISO)

cytosol (IBA,ISO)

lamellipodium (IEA)

nucleus (IBA,ISO)

ribonucleoprotein complex (IBA,ISO)

spliceosomal complex (IEA)

Molecular Function

mRNA 3'-UTR binding (IBA)

mRNA binding (ISO)

nucleic acid binding (IEA)

poly(A) binding (IBA,ISO)

poly(C) RNA binding (ISO)

poly(U) RNA binding (IBA,ISO)

protein binding (ISO)

RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

mRNA decay pathway (IEA)

RNA degradation pathway (IEA)

RNA transport pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8524242	PMID:12477932	PMID:17289661	PMID:21940797	PMID:22658674	PMID:22681889	PMID:24469397

Genomics

Comparative Map Data

Pabpc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	140,847,835 - 140,864,089 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	140,848,225 - 140,864,087 (+)	Ensembl				GRCr8
mRatBN7.2	5	135,563,142 - 135,578,985 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	135,563,562 - 135,578,979 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	138,269,597 - 138,284,890 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	140,039,563 - 140,054,856 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	140,046,708 - 140,062,001 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	140,978,893 - 140,994,732 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	140,979,435 - 140,994,732 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	142,599,706 - 142,615,003 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	134,102,156 - 134,117,452 (+)	NCBI		Celera
RGSC_v3.1	5	142,604,839 - 142,620,228 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

PABPC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	39,560,816 - 39,576,790 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	39,560,709 - 39,576,868 (-)	Ensembl			hg38	GRCh38
GRCh37	1	40,026,488 - 40,042,462 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	39,799,075 - 39,815,003 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	39,695,580 - 39,711,509	NCBI
Celera	1	38,308,199 - 38,324,232 (-)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	38,145,698 - 38,161,736 (-)	NCBI		HuRef
CHM1_1	1	40,141,859 - 40,157,895 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	39,429,194 - 39,445,168 (-)	NCBI		T2T-CHM13v2.0

Pabpc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	123,172,722 - 123,192,718 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	123,156,144 - 123,192,718 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	123,282,303 - 123,298,925 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	123,262,351 - 123,298,925 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	122,960,154 - 122,976,075 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	122,785,214 - 122,801,135 (+)	NCBI		MGSCv36	mm8
Celera	4	121,615,267 - 121,631,202 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	57.42	NCBI

Pabpc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	17,084,805 - 17,101,026 (-)	Ensembl
ChiLan1.0	NW_004955452	17,083,679 - 17,101,436 (-)	NCBI	ChiLan1.0	ChiLan1.0

PABPC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	187,249,907 - 187,265,980 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	186,387,478 - 186,405,157 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	38,846,296 - 38,862,371 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	40,172,651 - 40,188,308 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	40,172,657 - 40,188,308 (-)	Ensembl			panPan2	panpan1.1

HEYL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	3,242,738 - 3,257,275 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	3,235,611 - 3,303,445 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	3,501,443 - 3,516,003 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	3,362,836 - 3,377,395 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	3,362,852 - 3,377,380 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	3,238,950 - 3,253,501 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	3,299,982 - 3,314,518 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	3,315,601 - 3,330,164 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pabpc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	55,627,296 - 55,643,277 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	21,452,005 - 21,468,065 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	21,453,244 - 21,468,059 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PABPC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	95,382,302 - 95,399,080 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	95,382,295 - 95,399,452 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	88,468,836 - 88,485,979 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PABPC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	93,161,868 - 93,177,863 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	93,161,877 - 93,177,839 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	23,501,232 - 23,517,166 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pabpc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	22,069,224 - 22,087,165 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	22,069,218 - 22,086,745 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pabpc4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	34,962,187 - 34,977,933 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pabpc4
137 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	229
Count of miRNA genes:	155
Interacting mature miRNAs:	174
Transcripts:	ENSRNOT00000056592
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130678987	145274255	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
7411722	Strs6	Sensitivity to stroke QTL 6	3.9		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	5	140258140	143398122	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

A001T47

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	135,578,722 - 135,578,827 (+)	MAPPER	mRatBN7.2
mRatBN7.2	12	3,119,189 - 3,119,294 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	135,578,722 - 135,578,827 (-)	MAPPER	mRatBN7.2
mRatBN7.2	12	3,119,189 - 3,119,294 (-)	MAPPER	mRatBN7.2
Rnor_6.0	5	140,994,470 - 140,994,574	NCBI	Rnor6.0
Rnor_6.0	12	3,921,767 - 3,921,871	NCBI	Rnor6.0
Rnor_5.0	5	144,784,133 - 144,784,237	UniSTS	Rnor5.0
Rnor_5.0	12	6,052,808 - 6,052,912	UniSTS	Rnor5.0
RGSC_v3.4	5	142,614,741 - 142,614,845	UniSTS	RGSC3.4
RGSC_v3.4	12	1,017,446 - 1,017,550	UniSTS	RGSC3.4
Celera	12	4,938,060 - 4,938,164	UniSTS
Celera	5	134,117,190 - 134,117,294	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	12	p12	UniSTS

UniSTS:479187

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	3,117,723 - 3,118,323 (-)	MAPPER	mRatBN7.2
Rnor_6.0	12	3,922,738 - 3,923,337	NCBI	Rnor6.0
Rnor_5.0	12	6,053,779 - 6,054,378	UniSTS	Rnor5.0
RGSC_v3.4	12	1,018,417 - 1,019,016	UniSTS	RGSC3.4
Celera	12	4,936,594 - 4,937,193	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	12	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH005388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056592 ⟹ ENSRNOP00000053432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	140,848,237 - 140,864,087 (+)	Ensembl
mRatBN7.2 Ensembl	5	135,563,562 - 135,578,979 (+)	Ensembl
Rnor_6.0 Ensembl	5	140,979,435 - 140,994,732 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106428 ⟹ ENSRNOP00000090731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	140,848,225 - 140,864,087 (+)	Ensembl
mRatBN7.2 Ensembl	5	135,563,562 - 135,578,979 (+)	Ensembl

RefSeq Acc Id:

NM_001100538 ⟹ NP_001094008

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,848,792 - 140,864,089 (+)	NCBI
mRatBN7.2	5	135,563,687 - 135,578,985 (+)	NCBI
Rnor_6.0	5	140,979,435 - 140,994,732 (+)	NCBI
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI
RGSC_v3.4	5	142,599,706 - 142,615,003 (+)	RGD
Celera	5	134,102,156 - 134,117,452 (+)	RGD

Sequence:

show sequence

GTGTCCCCAAGGCCGCTGTGAGCGCAGCATCTGGCTGCCTCTAGAAAAAATTTTTGCCCCCTCT
GCAAGGGGATTCCCTACTTCAATTTTTATCTTTTAAGCTCCAAGCCAGGACAGCTGGAGAGTAC
AAACTCCAGGAGAGGGCCATATTGTTTTTGAGAGCCTTTTGTCTTGGGGCTTTTGCGGTCCGGT
GTAAGTCGTCCCGCACTCCGGTCCCGCCTCGGAGCCTCCCTGCTCCAGCCTCTCCCAGCGTCGC
TGGTGCCACCTGTGCGCTGCGGCGCGTGCCACAGCTCTTCGGAGCCCCTTTTGTCCTGCAGTAG
GCCCTGCAAGAAGTCCTGGCGGGGCTCGGGGTAGTAGGGGGTGGGGAGATGAACGCTGCGGCCA
GCAGCTACCCCATGGCCTCCTTATACGTGGGCGATCTGCACTCCGATGTCACCGAAGCCATGCT
GTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACC
CGCCGCTCTCTGGGTTATGCCTACGTCAACTTCCAGCAGCCAGCTGACGCTGAGAGGGCCTTGG
ACACCATGAACTTTGATGTGATTAAGGGGAAGCCAATCCGGATCATGTGGTCTCAGAGGGACCC
CTCTTTGAGGAAGTCTGGTGTGGGAAATGTCTTCATCAAGAACCTGGACAAGTCTATAGACAAC
AAGGCACTGTATGACACTTTCTCTGCCTTCGGAAACATCCTGTCCTGTAAGGTGGTCTGTGATG
AGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTCGAGACCCAAGAGGCTGCCAACAAGGCCAT
CGAGAAGATGAATGGCATGCTCCTCAATGACCGCAAAGTGTTCGTGGGCAGATTCAAGTCTCGC
AAAGAGCGGGAAGCCGAGCTTGGAGCCAAGGCCAAGGAATTCACCAATGTTTATATCAAAAACT
TTGGAGAAGAGGTGGATGATGAGAATCTGAGGGAGCTATTCAGCCAGTTTGGTAAGACCTTAAG
TGTCAAGGTGATGAGAGACTGCAGTGGGAAGTCCAAAGGCTTCGGCTTCGTGAGCTATGAGAAA
CATGAGGATGCCAATAAGGCTGTGGAAGAAATGAATGGAAAAGAAATGAGTGGGAAATCCATAT
TTGTAGGCCGTGCTCAGAAAAAAGTAGAACGTCAGGCGGAGTTAAAACGGAAATTCGAACAGCT
GAAGCAGGAGAGGATTAGTCGGTACCAGGGAGTGAATCTCTACATTAAGAACTTGGATGACACC
ATTGACGATGAGAAGTTAAGGAAAGAGTTCTCACCCTTTGGATCAATCACCAGTGCGAAGGTGA
TGCTGGAAGACGGGAGAAGCAAAGGGTTTGGCTTTGTCTGTTTCTCCTCTCCTGAAGAGGCAAC
CAAAGCGGTCACGGAGATGAACGGACGCATTGTGGGCTCCAAGCCTCTGTACGTCGCCCTGGCC
CAGAGGAAGGAGGAGCGGAAGGCTCACCTGACTAACCAGTATATGCAGCGTGTGGCAGGAATGA
GAGCGCTCCCTGCCAACGCCATCTTAAATCAGTTCCAGCCTGCAGCTGGTGGCTACTTTGTGCC
GGCAGTGCCACAGGCCCAGGGAAGACCTCCATATTACACACCTAATCAATTAGCGCAAATGAGG
CCTAATCCACGCTGGCAGCAAGGCGGGAGACCTCAAGGCTTCCAAGGAATGCCAAGTGCCCTGC
GGCAATCTGGGCCTCGTCCAGCTCTTCGGCATCTGGCTCCAACTGGGTCTGAGTGCCCGGACCG
CTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTGACAGCTGCCAGTCT
GGAGGCGTCCCTACGGCTGTGCCAAACCTTGCACCTCGTGCTACAGTCGCTGCTGCTGCTCCCA
GGGCTGTGGCTCCATACAAGTATGCCTCCAATGTCCGCAGCCCTCACCCTGCCATTCAGCCGCT
GCAGGCCCCCCAGCCTGCAGTCCATGTCCAGGGTCAAGAACCCCTGACTGCCTCCATGCTGGCT
GCAGCTCCTCCCCAGGAGCAGAAGCAGATGCTGGGGGAGCGTTTGTTCCCACTTATCCAAACAA
TGCATTCAAACCTGGCTGGAAAAATTACAGGGATGCTGCTAGAAATCGACAACTCTGAGCTGCT
CCACATGCTGGAGTCCCCCGAGTCCCTCCGTTCCAAGGTGGATGAAGCTGTGGCAGTCCTGCAG
GCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCACTGTTGCTGCTGCTACCTCTTAAA
CCAGAAGAGTCAAAAGCCAAATAACCCCTCACGGCATTCAGCTGAGGTCTGAAGACTTCCTAGT
TTGTCTGTGGACCTCTTTCAAGAACCAAGTTACAAATTCAACAGGTCATTTTGTATCAAAAGGT
CAATTATGAAGCACCTAGAATTTTTCAATTATAAGAATATATTCTCTGGGTTCTGTTGTGGCCC
AGATGATGGTAACTTTTTTTTCTATTATGAGTTCTGTTTTTTTTCCCCTCTCCCAGAAATTGGT
TTTGATGTACCCAAGACTTAAGTTTCTCAATAAAGGAAATAAAATCTCCAA

hide sequence

RefSeq Acc Id:

XM_006238798 ⟹ XP_006238860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,863,928 (+)	NCBI
mRatBN7.2	5	135,563,143 - 135,578,985 (+)	NCBI
Rnor_6.0	5	140,978,893 - 140,994,732 (+)	NCBI
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI

Sequence:

show sequence

CGACTGCGCCCAGGTCGCGAGGCGCCCTTCGACCAGCAGCGCCCGGGGCGGGAGGGTATAAATG
GAGCGGTGGCTGCTTCAGCCGCCTCTCTCCGCCCCGGGTCGCAGTCGCTAGTGCTGCGTTTGGG
CTCAGCAAGCCTAAAGCAAAAAAGAGAAAAAGCTTAAAAAAAATTTAAAAAAGCCTCAAAAAAC
CCTAAAAAAAAGAAAAGAAGAAAAGAAGAGAAAAAAAAAGAAAAAGGAAGGAAAAGAAGAAAAA
GAACGAGACCGCGACTTGTGCTGGGAGCCCGCGGGGAAGTGACTTTCACAGCTTCCGGCCTGCC
TGTCCGTCGGCGTCTGTCTGTCCGTCCCGTGGTGAGCCGTCCCCCAGGCCCGGCCCGCCCCCGC
ACGCCTCCGCGCCGCGTGGCAGCCCCGCGCCCCGGCTGGCCGCACCACGTGTCCGCGCTGCCCT
TCGCCGGCACCCGCAAAGATTTGGTTTCCCCCTTCCCGGGCCGCTGTAATTGTAAACCGCCGGG
AGCCCGGGGCCTATATTTATCGCGAAACGCGTGTCCCCAAGGCCGCTGTGAGCGCAGCATCTGG
CTGCCTCTAGAAAAAATTTTTGCCCCCTCTGCAAGGGGATTCCCTACTTCAATTTTTATCTTTT
AAGCTCCAAGCCAGGACAGCTGGAGAGTACAAACTCCAGGAGAGGGCCATATTGTTTTTGAGAG
CCTTTTGTCTTGGGGCTTTTGCGGTCCGGTGTAAGTCGTCCCGCACTCCGGTCCCGCCTCGGAG
CCTCCCTGCTCCAGCCTCTCCCAGCGTCGCTGGTGCCACCTGTGCGCTGCGGCGCGTGCCACAG
CTCTTCGGAGCCCCTTTTGTCCTGCAGTAGGCCCTGCAAGAAGTCCTGGCGGGGCTCGGGGTAG
TAGGGGGTGGGGAGATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGA
TCTGCACTCCGATGTCACCGAAGCCATGCTGTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTG
TCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCTCTGGGTTATGCCTACGTCAACTTCC
AGCAGCCAGCTGACGCTGAGAGGGCCTTGGACACCATGAACTTTGATGTGATTAAGGGGAAGCC
AATCCGGATCATGTGGTCTCAGAGGGACCCCTCTTTGAGGAAGTCTGGTGTGGGAAATGTCTTC
ATCAAGAACCTGGACAAGTCTATAGACAACAAGGCACTGTATGACACTTTCTCTGCCTTCGGAA
ACATCCTGTCCTGTAAGGTGGTCTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTT
CGAGACCCAAGAGGCTGCCAACAAGGCCATCGAGAAGATGAATGGCATGCTCCTCAATGACCGC
AAAGTGTTCGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAGGCCA
AGGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGAGAATCTGAGGGA
GCTATTCAGCCAGTTTGGTAAGACCTTAAGTGTCAAGGTGATGAGAGACTGCAGTGGGAAGTCC
AAAGGCTTCGGCTTCGTGAGCTATGAGAAACATGAGGATGCCAATAAGGCTGTGGAAGAAATGA
ATGGAAAAGAAATGAGTGGGAAATCCATATTTGTAGGCCGTGCTCAGAAAAAAGTAGAACGTCA
GGCGGAGTTAAAACGGAAATTCGAACAGCTGAAGCAGGAGAGGATTAGTCGGTACCAGGGAGTG
AATCTCTACATTAAGAACTTGGATGACACCATTGACGATGAGAAGTTAAGGAAAGAGTTCTCAC
CCTTTGGATCAATCACCAGTGCGAAGGTGATGCTGGAAGACGGGAGAAGCAAAGGGTTTGGCTT
TGTCTGTTTCTCCTCTCCTGAAGAGGCAACCAAAGCGGTCACGGAGATGAACGGACGCATTGTG
GGCTCCAAGCCTCTGTACGTCGCCCTGGCCCAGAGGAAGGAGGAGCGGAAGGCTCACCTGACTA
ACCAGTATATGCAGCGTGTGGCAGGAATGAGAGCGCTCCCTGCCAACGCCATCTTAAATCAGTT
CCAGCCTGCAGCTGGTGGCTACTTTGTGCCGGCAGTGCCACAGGCCCAGGGAAGACCTCCATAT
TACACACCTAATCAATTAGCGCAAATGAGGCCTAATCCACGCTGGCAGCAAGGCGGGAGACCTC
AAGGCTTCCAAGGAATGCCAAGTGCCCTGCGGCAATCTGGGCCTCGTCCAGCTCTTCGGCATCT
GGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTTCCTACTACCGCTCAGAGAGTCGGGTCT
GAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTG
ACAGCTGCCAGTCTGGAGGCGTCCCTACGGCTGTGCCAAACCTTGCACCTCGTGCTACAGTCGC
TGCTGCTGCTCCCAGGGCTGTGGCTCCATACAAGTATGCCTCCAATGTCCGCAGCCCTCACCCT
GCCATTCAGCCGCTGCAGGCCCCCCAGCCTGCAGTCCATGTCCAGGGTCAAGAACCCCTGACTG
CCTCCATGCTGGCTGCAGCTCCTCCCCAGGAGCAGAAGCAGATGCTGGGGGAGCGTTTGTTCCC
ACTTATCCAAACAATGCATTCAAACCTGGCTGGAAAAATTACAGGGATGCTGCTAGAAATCGAC
AACTCTGAGCTGCTCCACATGCTGGAGTCCCCCGAGTCCCTCCGTTCCAAGGTGGATGAAGCTG
TGGCAGTCCTGCAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCACTGTTGCTGC
TGCTACCTCTTAAACCAGAAGAGTCAAAAGCCAAATAACCCCTCACGGCATTCAGCTGAGGTCT
GAAGACTTCCTAGTTTGTCTGTGGACCTCTTTCAAGAACCAAGTTACAAATTCAACAGGTCATT
TTGTATCAAAAGGTCAATTATGAAGCACCTAGAATTTTTCAATTATAAGAATATATTCTCTGGG
TTCTGTTGTGGCCCAGATGATGGTAACTTTTTTTTCTATTATGAGTTCTGTTTTTTTTCCCCTC
TCCCAGAAATTGGTTTTGATGTACCCAAGACTTAAGTTTCTCAATAAAGGAAATAAAATCTCCA
A

hide sequence

RefSeq Acc Id:

XM_006238799 ⟹ XP_006238861

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,864,089 (+)	NCBI
mRatBN7.2	5	135,563,142 - 135,578,985 (+)	NCBI
Rnor_6.0	5	140,978,893 - 140,994,732 (+)	NCBI
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI

Sequence:

show sequence

CGACTGCGCCCAGGTCGCGAGGCGCCCTTCGACCAGCAGCGCCCGGGGCGGGAGGGTATAAATG
GAGCGGTGGCTGCTTCAGCCGCCTCTCTCCGCCCCGGGTCGCAGTCGCTAGTGCTGCGTTTGGG
CTCAGCAAGCCTAAAGCAAAAAAGAGAAAAAGCTTAAAAAAAATTTAAAAAAGCCTCAAAAAAC
CCTAAAAAAAAGAAAAGAAGAAAAGAAGAGAAAAAAAAAGAAAAAGGAAGGAAAAGAAGAAAAA
GAACGAGACCGCGACTTGTGCTGGGAGCCCGCGGGGAAGTGACTTTCACAGCTTCCGGCCTGCC
TGTCCGTCGGCGTCTGTCTGTCCGTCCCGTGGTGAGCCGTCCCCCAGGCCCGGCCCGCCCCCGC
ACGCCTCCGCGCCGCGTGGCAGCCCCGCGCCCCGGCTGGCCGCACCACGTGTCCGCGCTGCCCT
TCGCCGGCACCCGCAAAGATTTGGTTTCCCCCTTCCCGGGCCGCTGTAATTGTAAACCGCCGGG
AGCCCGGGGCCTATATTTATCGCGAAACGCGTGTCCCCAAGGCCGCTGTGAGCGCAGCATCTGG
CTGCCTCTAGAAAAAATTTTTGCCCCCTCTGCAAGGGGATTCCCTACTTCAATTTTTATCTTTT
AAGCTCCAAGCCAGGACAGCTGGAGAGTACAAACTCCAGGAGAGGGCCATATTGTTTTTGAGAG
CCTTTTGTCTTGGGGCTTTTGCGGTCCGGTGTAAGTCGTCCCGCACTCCGGTCCCGCCTCGGAG
CCTCCCTGCTCCAGCCTCTCCCAGCGTCGCTGGTGCCACCTGTGCGCTGCGGCGCGTGCCACAG
CTCTTCGGAGCCCCTTTTGTCCTGCAGTAGGCCCTGCAAGAAGTCCTGGCGGGGCTCGGGGTAG
TAGGGGGTGGGGAGATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGA
TCTGCACTCCGATGTCACCGAAGCCATGCTGTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTG
TCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCTCTGGGTTATGCCTACGTCAACTTCC
AGCAGCCAGCTGACGCTGAGAGGGCCTTGGACACCATGAACTTTGATGTGATTAAGGGGAAGCC
AATCCGGATCATGTGGTCTCAGAGGGACCCCTCTTTGAGGAAGTCTGGTGTGGGAAATGTCTTC
ATCAAGAACCTGGACAAGTCTATAGACAACAAGGCACTGTATGACACTTTCTCTGCCTTCGGAA
ACATCCTGTCCTGTAAGGTGGTCTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTT
CGAGACCCAAGAGGCTGCCAACAAGGCCATCGAGAAGATGAATGGCATGCTCCTCAATGACCGC
AAAGTGTTCGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAGGCCA
AGGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGAGAATCTGAGGGA
GCTATTCAGCCAGTTTGGTAAGACCTTAAGTGTCAAGGTGATGAGAGACTGCAGTGGGAAGTCC
AAAGGCTTCGGCTTCGTGAGCTATGAGAAACATGAGGATGCCAATAAGGCTGTGGAAGAAATGA
ATGGAAAAGAAATGAGTGGGAAATCCATATTTGTAGGCCGTGCTCAGAAAAAAGTAGAACGTCA
GGCGGAGTTAAAACGGAAATTCGAACAGCTGAAGCAGGAGAGGATTAGTCGGTACCAGGGAGTG
AATCTCTACATTAAGAACTTGGATGACACCATTGACGATGAGAAGTTAAGGAAAGAGTTCTCAC
CCTTTGGATCAATCACCAGTGCGAAGGTGATGCTGGAAGACGGGAGAAGCAAAGGGTTTGGCTT
TGTCTGTTTCTCCTCTCCTGAAGAGGCAACCAAAGCGGTCACGGAGATGAACGGACGCATTGTG
GGCTCCAAGCCTCTGTACGTCGCCCTGGCCCAGAGGAAGGAGGAGCGGAAGGCTCACCTGACTA
ACCAGTATATGCAGCGTGTGGCAGGAATGAGAGCGCTCCCTGCCAACGCCATCTTAAATCAGTT
CCAGCCTGCAGCTGGTGGCTACTTTGTGCCGGCAGTGCCACAGGCCCAGGGAAGACCTCCATAT
TACACACCTAATCAATTAGCGCAAATGAGGCCTAATCCACGCTGGCAGCAAGGCGGGAGACCTC
AAGGCTTCCAAGGAATGCCAAGTGCCCTGCGGCAATCTGGGCCTCGTCCAGCTCTTCGGCATCT
GGCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTTCCTACTACCGCTCAGAGAGTCGGGTCT
GAGTGCCCGGACCGCTTGGCTATGGACTTTGGTGGGGCTGGTGCCGCCCAGCAAGGGCTGACTG
ACAGCTGCCAGTCTGGAGGCGTCCCTACGGCTGTGCCAAACCTTGCACCTCGTGCTACAGTCGC
TGCTGCTGCTCCCAGGGCTGTGGCTCCATACAAGTATGCCTCCAATGTCCGCAGCCCTCACCCT
GCCATTCAGCCGCTGCAGGCCCCCCAGCCTGCAGTCCATGTCCAGGGTCAAGAACCCCTGACTG
CCTCCATGCTGGCTGCAGCTCCTCCCCAGGAGCAGAAGCAGATGCTGGGGGAGCGTTTGTTCCC
ACTTATCCAAACAATGCATTCAAACCTGGCTGGAAAAATTACAGGGATGCTGCTAGAAATCGAC
AACTCTGAGCTGCTCCACATGCTGGAGTCCCCCGAGTCCCTCCGTTCCAAGGTGGATGAAGCTG
TGGCAGTCCTGCAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGAGTCAAAAGCCAAATA
ACCCCTCACGGCATTCAGCTGAGGTCTGAAGACTTCCTAGTTTGTCTGTGGACCTCTTTCAAGA
ACCAAGTTACAAATTCAACAGGTCATTTTGTATCAAAAGGTCAATTATGAAGCACCTAGAATTT
TTCAATTATAAGAATATATTCTCTGGGTTCTGTTGTGGCCCAGATGATGGTAACTTTTTTTTCT
ATTATGAGTTCTGTTTTTTTTCCCCTCTCCCAGAAATTGGTTTTGATGTACCCAAGACTTAAGT
TTCTCAATAAAGGAAATAAAATCTCCAA

hide sequence

RefSeq Acc Id:

XM_006238800 ⟹ XP_006238862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,863,928 (+)	NCBI
mRatBN7.2	5	135,563,144 - 135,578,985 (+)	NCBI
Rnor_6.0	5	140,978,894 - 140,994,732 (+)	NCBI
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI

Sequence:

show sequence

GACTGCGCCCAGGTCGCGAGGCGCCCTTCGACCAGCAGCGCCCGGGGCGGGAGGGTATAAATGG
AGCGGTGGCTGCTTCAGCCGCCTCTCTCCGCCCCGGGTCGCAGTCGCTAGTGCTGCGTTTGGGC
TCAGCAAGCCTAAAGCAAAAAAGAGAAAAAGCTTAAAAAAAATTTAAAAAAGCCTCAAAAAACC
CTAAAAAAAAGAAAAGAAGAAAAGAAGAGAAAAAAAAAGAAAAAGGAAGGAAAAGAAGAAAAAG
AACGAGACCGCGACTTGTGCTGGGAGCCCGCGGGGAAGTGACTTTCACAGCTTCCGGCCTGCCT
GTCCGTCGGCGTCTGTCTGTCCGTCCCGTGGTGAGCCGTCCCCCAGGCCCGGCCCGCCCCCGCA
CGCCTCCGCGCCGCGTGGCAGCCCCGCGCCCCGGCTGGCCGCACCACGTGTCCGCGCTGCCCTT
CGCCGGCACCCGCAAAGATTTGGTTTCCCCCTTCCCGGGCCGCTGTAATTGTAAACCGCCGGGA
GCCCGGGGCCTATATTTATCGCGAAACGCGTGTCCCCAAGGCCGCTGTGAGCGCAGCATCTGGC
TGCCTCTAGAAAAAATTTTTGCCCCCTCTGCAAGGGGATTCCCTACTTCAATTTTTATCTTTTA
AGCTCCAAGCCAGGACAGCTGGAGAGTACAAACTCCAGGAGAGGGCCATATTGTTTTTGAGAGC
CTTTTGTCTTGGGGCTTTTGCGGTCCGGTGTAAGTCGTCCCGCACTCCGGTCCCGCCTCGGAGC
CTCCCTGCTCCAGCCTCTCCCAGCGTCGCTGGTGCCACCTGTGCGCTGCGGCGCGTGCCACAGC
TCTTCGGAGCCCCTTTTGTCCTGCAGTAGGCCCTGCAAGAAGTCCTGGCGGGGCTCGGGGTAGT
AGGGGGTGGGGAGATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGAT
CTGCACTCCGATGTCACCGAAGCCATGCTGTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTGT
CCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCTCTGGGTTATGCCTACGTCAACTTCCA
GCAGCCAGCTGACGCTGAGAGGGCCTTGGACACCATGAACTTTGATGTGATTAAGGGGAAGCCA
ATCCGGATCATGTGGTCTCAGAGGGACCCCTCTTTGAGGAAGTCTGGTGTGGGAAATGTCTTCA
TCAAGAACCTGGACAAGTCTATAGACAACAAGGCACTGTATGACACTTTCTCTGCCTTCGGAAA
CATCCTGTCCTGTAAGGTGGTCTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTC
GAGACCCAAGAGGCTGCCAACAAGGCCATCGAGAAGATGAATGGCATGCTCCTCAATGACCGCA
AAGTGTTCGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAGGCCAA
GGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGAGAATCTGAGGGAG
CTATTCAGCCAGTTTGGTAAGACCTTAAGTGTCAAGGTGATGAGAGACTGCAGTGGGAAGTCCA
AAGGCTTCGGCTTCGTGAGCTATGAGAAACATGAGGATGCCAATAAGGCTGTGGAAGAAATGAA
TGGAAAAGAAATGAGTGGGAAATCCATATTTGTAGGCCGTGCTCAGAAAAAAGTAGAACGTCAG
GCGGAGTTAAAACGGAAATTCGAACAGCTGAAGCAGGAGAGGATTAGTCGGTACCAGGGAGTGA
ATCTCTACATTAAGAACTTGGATGACACCATTGACGATGAGAAGTTAAGGAAAGAGTTCTCACC
CTTTGGATCAATCACCAGTGCGAAGGTGATGCTGGAAGACGGGAGAAGCAAAGGGTTTGGCTTT
GTCTGTTTCTCCTCTCCTGAAGAGGCAACCAAAGCGGTCACGGAGATGAACGGACGCATTGTGG
GCTCCAAGCCTCTGTACGTCGCCCTGGCCCAGAGGAAGGAGGAGCGGAAGGCTCACCTGACTAA
CCAGTATATGCAGCGTGTGGCAGGAATGAGAGCGCTCCCTGCCAACGCCATCTTAAATCAGTTC
CAGCCTGCAGCTGGTGGCTACTTTGTGCCGGCAGTGCCACAGGCCCAGGGAAGACCTCCATATT
ACACACCTAATCAATTAGCGCAAATGAGGCCTAATCCACGCTGGCAGCAAGGCGGGAGACCTCA
AGGCTTCCAAGGAATGCCAAGTGCCCTGCGGCAATCTGGGCCTCGTCCAGCTCTTCGGCATCTG
GCTCCAACTGGTAATGCTCCGGCCTCTCGTGGCCTTCCTACTACCGCTCAGAGAGTCGGCGTCC
CTACGGCTGTGCCAAACCTTGCACCTCGTGCTACAGTCGCTGCTGCTGCTCCCAGGGCTGTGGC
TCCATACAAGTATGCCTCCAATGTCCGCAGCCCTCACCCTGCCATTCAGCCGCTGCAGGCCCCC
CAGCCTGCAGTCCATGTCCAGGGTCAAGAACCCCTGACTGCCTCCATGCTGGCTGCAGCTCCTC
CCCAGGAGCAGAAGCAGATGCTGGGGGAGCGTTTGTTCCCACTTATCCAAACAATGCATTCAAA
CCTGGCTGGAAAAATTACAGGGATGCTGCTAGAAATCGACAACTCTGAGCTGCTCCACATGCTG
GAGTCCCCCGAGTCCCTCCGTTCCAAGGTGGATGAAGCTGTGGCAGTCCTGCAGGCTCATCATG
CCAAGAAAGAAGCTGCCCAGAAGGTGGGCACTGTTGCTGCTGCTACCTCTTAAACCAGAAGAGT
CAAAAGCCAAATAACCCCTCACGGCATTCAGCTGAGGTCTGAAGACTTCCTAGTTTGTCTGTGG
ACCTCTTTCAAGAACCAAGTTACAAATTCAACAGGTCATTTTGTATCAAAAGGTCAATTATGAA
GCACCTAGAATTTTTCAATTATAAGAATATATTCTCTGGGTTCTGTTGTGGCCCAGATGATGGT
AACTTTTTTTTCTATTATGAGTTCTGTTTTTTTTCCCCTCTCCCAGAAATTGGTTTTGATGTAC
CCAAGACTTAAGTTTCTCAATAAAGGAAATAAAATCTCCAA

hide sequence

RefSeq Acc Id:

XM_006238801 ⟹ XP_006238863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,863,928 (+)	NCBI
mRatBN7.2	5	135,563,143 - 135,578,985 (+)	NCBI
Rnor_6.0	5	140,978,894 - 140,994,732 (+)	NCBI
Rnor_5.0	5	144,768,558 - 144,784,395 (+)	NCBI

Sequence:

show sequence

GACTGCGCCCAGGTCGCGAGGCGCCCTTCGACCAGCAGCGCCCGGGGCGGGAGGGTATAAATGG
AGCGGTGGCTGCTTCAGCCGCCTCTCTCCGCCCCGGGTCGCAGTCGCTAGTGCTGCGTTTGGGC
TCAGCAAGCCTAAAGCAAAAAAGAGAAAAAGCTTAAAAAAAATTTAAAAAAGCCTCAAAAAACC
CTAAAAAAAAGAAAAGAAGAAAAGAAGAGAAAAAAAAAGAAAAAGGAAGGAAAAGAAGAAAAAG
AACGAGACCGCGACTTGTGCTGGGAGCCCGCGGGGAAGTGACTTTCACAGCTTCCGGCCTGCCT
GTCCGTCGGCGTCTGTCTGTCCGTCCCGTGGTGAGCCGTCCCCCAGGCCCGGCCCGCCCCCGCA
CGCCTCCGCGCCGCGTGGCAGCCCCGCGCCCCGGCTGGCCGCACCACGTGTCCGCGCTGCCCTT
CGCCGGCACCCGCAAAGATTTGGTTTCCCCCTTCCCGGGCCGCTGTAATTGTAAACCGCCGGGA
GCCCGGGGCCTATATTTATCGCGAAACGCGTGTCCCCAAGGCCGCTGTGAGCGCAGCATCTGGC
TGCCTCTAGAAAAAATTTTTGCCCCCTCTGCAAGGGGATTCCCTACTTCAATTTTTATCTTTTA
AGCTCCAAGCCAGGACAGCTGGAGAGTACAAACTCCAGGAGAGGGCCATATTGTTTTTGAGAGC
CTTTTGTCTTGGGGCTTTTGCGGTCCGGTGTAAGTCGTCCCGCACTCCGGTCCCGCCTCGGAGC
CTCCCTGCTCCAGCCTCTCCCAGCGTCGCTGGTGCCACCTGTGCGCTGCGGCGCGTGCCACAGC
TCTTCGGAGCCCCTTTTGTCCTGCAGTAGGCCCTGCAAGAAGTCCTGGCGGGGCTCGGGGTAGT
AGGGGGTGGGGAGATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCTTATACGTGGGCGAT
CTGCACTCCGATGTCACCGAAGCCATGCTGTATGAAAAGTTCAGCCCTGCGGGGCCTGTGCTGT
CCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCTCTGGGTTATGCCTACGTCAACTTCCA
GCAGCCAGCTGACGCTGAGAGGGCCTTGGACACCATGAACTTTGATGTGATTAAGGGGAAGCCA
ATCCGGATCATGTGGTCTCAGAGGGACCCCTCTTTGAGGAAGTCTGGTGTGGGAAATGTCTTCA
TCAAGAACCTGGACAAGTCTATAGACAACAAGGCACTGTATGACACTTTCTCTGCCTTCGGAAA
CATCCTGTCCTGTAAGGTGGTCTGTGATGAGAACGGCTCTAAGGGTTATGCCTTTGTCCACTTC
GAGACCCAAGAGGCTGCCAACAAGGCCATCGAGAAGATGAATGGCATGCTCCTCAATGACCGCA
AAGTGTTCGTGGGCAGATTCAAGTCTCGCAAAGAGCGGGAAGCCGAGCTTGGAGCCAAGGCCAA
GGAATTCACCAATGTTTATATCAAAAACTTTGGAGAAGAGGTGGATGATGAGAATCTGAGGGAG
CTATTCAGCCAGTTTGGTAAGACCTTAAGTGTCAAGGTGATGAGAGACTGCAGTGGGAAGTCCA
AAGGCTTCGGCTTCGTGAGCTATGAGAAACATGAGGATGCCAATAAGGCTGTGGAAGAAATGAA
TGGAAAAGAAATGAGTGGGAAATCCATATTTGTAGGCCGTGCTCAGAAAAAAGTAGAACGTCAG
GCGGAGTTAAAACGGAAATTCGAACAGCTGAAGCAGGAGAGGATTAGTCGGTACCAGGGAGTGA
ATCTCTACATTAAGAACTTGGATGACACCATTGACGATGAGAAGTTAAGGAAAGAGTTCTCACC
CTTTGGATCAATCACCAGTGCGAAGGTGATGCTGGAAGACGGGAGAAGCAAAGGGTTTGGCTTT
GTCTGTTTCTCCTCTCCTGAAGAGGCAACCAAAGCGGTCACGGAGATGAACGGACGCATTGTGG
GCTCCAAGCCTCTGTACGTCGCCCTGGCCCAGAGGAAGGAGGAGCGGAAGGCTCACCTGACTAA
CCAGTATATGCAGCGTGTGGCAGGAATGAGAGCGCTCCCTGCCAACGCCATCTTAAATCAGTTC
CAGCCTGCAGCTGGTGGCTACTTTGTGCCGGCAGTGCCACAGGCCCAGGGAAGACCTCCATATT
ACACACCTAATCAATTAGCGCAAATGAGGCCTAATCCACGCTGGCAGCAAGGCGGGAGACCTCA
AGGCTTCCAAGGAATGCCAAGTGCCCTGCGGCAATCTGGGCCTCGTCCAGCTCTTCGGCATCTG
GCTCCAACTGGCGTCCCTACGGCTGTGCCAAACCTTGCACCTCGTGCTACAGTCGCTGCTGCTG
CTCCCAGGGCTGTGGCTCCATACAAGTATGCCTCCAATGTCCGCAGCCCTCACCCTGCCATTCA
GCCGCTGCAGGCCCCCCAGCCTGCAGTCCATGTCCAGGGTCAAGAACCCCTGACTGCCTCCATG
CTGGCTGCAGCTCCTCCCCAGGAGCAGAAGCAGATGCTGGGGGAGCGTTTGTTCCCACTTATCC
AAACAATGCATTCAAACCTGGCTGGAAAAATTACAGGGATGCTGCTAGAAATCGACAACTCTGA
GCTGCTCCACATGCTGGAGTCCCCCGAGTCCCTCCGTTCCAAGGTGGATGAAGCTGTGGCAGTC
CTGCAGGCTCATCATGCCAAGAAAGAAGCTGCCCAGAAGGTGGGCACTGTTGCTGCTGCTACCT
CTTAAACCAGAAGAGTCAAAAGCCAAATAACCCCTCACGGCATTCAGCTGAGGTCTGAAGACTT
CCTAGTTTGTCTGTGGACCTCTTTCAAGAACCAAGTTACAAATTCAACAGGTCATTTTGTATCA
AAAGGTCAATTATGAAGCACCTAGAATTTTTCAATTATAAGAATATATTCTCTGGGTTCTGTTG
TGGCCCAGATGATGGTAACTTTTTTTTCTATTATGAGTTCTGTTTTTTTTCCCCTCTCCCAGAA
ATTGGTTTTGATGTACCCAAGACTTAAGTTTCTCAATAAAGGAAATAAAATCTCCAA

hide sequence

RefSeq Acc Id:

XM_039109613 ⟹ XP_038965541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,864,089 (+)	NCBI
mRatBN7.2	5	135,563,143 - 135,578,985 (+)	NCBI

RefSeq Acc Id:

XM_039109614 ⟹ XP_038965542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,854,787 - 140,863,928 (+)	NCBI
mRatBN7.2	5	135,569,685 - 135,578,985 (+)	NCBI

RefSeq Acc Id:

XM_063287433 ⟹ XP_063143503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,864,089 (+)	NCBI

RefSeq Acc Id:

XM_063287434 ⟹ XP_063143504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	140,847,835 - 140,864,089 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094008	(Get FASTA)	NCBI Sequence Viewer
	NP_001423634	(Get FASTA)	NCBI Sequence Viewer
	NP_001423635	(Get FASTA)	NCBI Sequence Viewer
	NP_001423636	(Get FASTA)	NCBI Sequence Viewer
	NP_001423637	(Get FASTA)	NCBI Sequence Viewer
	NP_001423638	(Get FASTA)	NCBI Sequence Viewer
	NP_001423639	(Get FASTA)	NCBI Sequence Viewer
	NP_001423640	(Get FASTA)	NCBI Sequence Viewer
	XP_006238860	(Get FASTA)	NCBI Sequence Viewer
	XP_006238861	(Get FASTA)	NCBI Sequence Viewer
	XP_006238862	(Get FASTA)	NCBI Sequence Viewer
	XP_006238863	(Get FASTA)	NCBI Sequence Viewer
	XP_038965541	(Get FASTA)	NCBI Sequence Viewer
	XP_038965542	(Get FASTA)	NCBI Sequence Viewer
	XP_063143503	(Get FASTA)	NCBI Sequence Viewer
	XP_063143504	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB60665	(Get FASTA)	NCBI Sequence Viewer
	AAH88337	(Get FASTA)	NCBI Sequence Viewer
	AAI66452	(Get FASTA)	NCBI Sequence Viewer
	EDL80375	(Get FASTA)	NCBI Sequence Viewer
	EDL80376	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053432
	ENSRNOP00000053432.4
	ENSRNOP00000090731
	ENSRNOP00000090731.2

RefSeq Acc Id:

NP_001094008 ⟸ NM_001100538

- UniProtKB:

A0A8J8XGC4 (UniProtKB/TrEMBL), A6IS24 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD
AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC
KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN
VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM
SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI
TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ
RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQG
MPSALRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVPNLAPRATV
AAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLF
PLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVA
AATS

hide sequence

RefSeq Acc Id:

XP_006238860 ⟸ XM_006238798

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD
AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC
KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN
VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM
SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI
TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ
RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQG
MPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQS
GGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLA
AAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ
AHHAKKEAAQKVGTVAAATS

hide sequence

RefSeq Acc Id:

XP_006238861 ⟸ XM_006238799

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD
AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC
KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN
VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM
SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI
TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ
RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQG
MPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQS
GGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLA
AAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ
AHHAKKEAAQKESKAK

hide sequence

RefSeq Acc Id:

XP_006238862 ⟸ XM_006238800

- Peptide Label:

isoform X4

- Sequence:

show sequence

MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD
AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC
KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN
VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM
SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI
TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ
RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQG
MPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVPNLAPRATVAAAAPRAVAPYKY
ASNVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGK
ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS

hide sequence

RefSeq Acc Id:

XP_006238863 ⟸ XM_006238801

- Peptide Label:

isoform X6

- Sequence:

show sequence

MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD
AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC
KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN
VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM
SGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI
TSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ
RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQG
MPSALRQSGPRPALRHLAPTGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQA
PQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM
LESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS

hide sequence

Ensembl Acc Id:

ENSRNOP00000053432 ⟸ ENSRNOT00000056592

RefSeq Acc Id:	XP_038965541 ⟸ XM_039109613
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038965542 ⟸ XM_039109614
- Peptide Label:	isoform X8
- UniProtKB:	Q5I0G7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090731 ⟸ ENSRNOT00000106428

RefSeq Acc Id:	XP_063143503 ⟸ XM_063287433
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063143504 ⟸ XM_063287434
- Peptide Label:	isoform X7

Protein Domains

PABC RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V9N0-F1-model_v2	AlphaFold	G3V9N0	1-644	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305015	AgrOrtholog
BioCyc Gene	G2FUF-40011	BioCyc
Ensembl Genes	ENSRNOG00000015642	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056592	ENTREZGENE
	ENSRNOT00000056592.5	UniProtKB/TrEMBL
	ENSRNOT00000106428	ENTREZGENE
	ENSRNOT00000106428.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	c-terminal domain of poly(a) binding protein	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7366578	IMAGE-MGC_LOAD
	IMAGE:8372968	IMAGE-MGC_LOAD
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	PABP-dom	UniProtKB/TrEMBL
	PABP_1234	UniProtKB/TrEMBL
	PABP_HYD	UniProtKB/TrEMBL
	PABP_RRM1	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM2_I_PABPs	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	RRM_dom_euk	UniProtKB/TrEMBL
KEGG Report	rno:298510	UniProtKB/TrEMBL
MGC_CLONE	MGC:109607	IMAGE-MGC_LOAD
	MGC:187687	IMAGE-MGC_LOAD
NCBI Gene	298510	ENTREZGENE
PANTHER	RNA BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	PABP	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
PhenoGen	Pabpc4	PhenoGen
PROSITE	PABC	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015642	RatGTEx
SMART	PolyA	UniProtKB/TrEMBL
	RRM	UniProtKB/TrEMBL
	RRM_1	UniProtKB/TrEMBL
Superfamily-SCOP	PABP_HYD	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I6ACF6_RAT	UniProtKB/TrEMBL
	A0A8J8XGC4	ENTREZGENE, UniProtKB/TrEMBL
	A6IS24	ENTREZGENE, UniProtKB/TrEMBL
	A6IS25	ENTREZGENE, UniProtKB/TrEMBL
	A6IS26	ENTREZGENE, UniProtKB/TrEMBL
	B2GUY3	ENTREZGENE
	G3V9N0	ENTREZGENE, UniProtKB/TrEMBL
	Q5I0G7	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	B2GUY3	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-12-15	Pabpc4	poly(A) binding protein, cytoplasmic 4	Pabpc4	poly A binding protein, cytoplasmic 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Pabpc4	poly A binding protein, cytoplasmic 4	Pabpc4_predicted	poly A binding protein, cytoplasmic 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pabpc4_predicted	poly A binding protein, cytoplasmic 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)