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Gene: Ebf3 (EBF transcription factor 3) Rattus norvegicus

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Symbol:

Ebf3

Name:

EBF transcription factor 3

RGD ID:

1304956

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Human ortholog(s) of this gene implicated in hypotonia, ataxia, and delayed development syndrome. Orthologous to human EBF3 (EBF transcription factor 3); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

early B-cell factor 3; LOC361668; transcription factor COE3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EBF3 (EBF transcription factor 3)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ebf3 (early B cell factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ebf3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EBF3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EBF3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ebf3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EBF3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EBF3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ebf3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ebf3 (EBF transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EBF2 (EBF transcription factor 2)	HGNC	OrthoDB
Homo sapiens (human):	EBF1 (EBF transcription factor 1)	HGNC	OrthoDB
Homo sapiens (human):	EBF4 (EBF family member 4)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Ebf3 (early B cell factor 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ebf3 (early B cell factor 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EBF3 (EBF transcription factor 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EBF3 (EBF transcription factor 3)	Alliance	DIOPT (HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ebf3b (EBF transcription factor 3b)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	kn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kn	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ebf3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ebf3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	201,426,446 - 201,544,444 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	201,426,450 - 201,544,305 (-)	Ensembl				GRCr8
mRatBN7.2	1	191,996,726 - 192,114,593 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	191,996,730 - 192,114,359 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	200,365,993 - 200,483,688 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	207,516,764 - 207,634,175 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	200,190,207 - 200,307,625 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	209,523,153 - 209,641,143 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	209,523,157 - 209,641,123 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	216,447,386 - 216,565,414 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	196,927,457 - 197,045,432 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	189,703,632 - 189,821,535 (-)	NCBI		Celera
RGSC_v3.1	1	197,078,423 - 197,199,341 (-)	NCBI
Cytogenetic Map	1	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ataxia (ISO)

autism spectrum disorder (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

hypotonia, ataxia, and delayed development syndrome (ISO)

intellectual disability (ISO)

Language Development Disorders (ISO)

Moebius syndrome (ISO)

Muscle Hypotonia (ISO)

Neurodevelopmental Disorders (ISO)

neurogenic bladder (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

arotinoid acid (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

bisphenol F (ISO)

CHIR 99021 (ISO)

chlorpyrifos (ISO)

cortisol (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

doxorubicin (ISO)

entinostat (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

indometacin (ISO)

L-ascorbic acid (ISO)

L-ascorbic acid 2-phosphate (ISO)

lead(0) (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

SB 431542 (ISO)

sodium fluoride (ISO)

testosterone (EXP)

titanium dioxide (ISO)

topotecan (EXP)

valproic acid (ISO)

XAV939 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12139918	PMID:28017370	PMID:28017372	PMID:28017373

Genomics

Comparative Map Data

Ebf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	201,426,446 - 201,544,444 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	201,426,450 - 201,544,305 (-)	Ensembl				GRCr8
mRatBN7.2	1	191,996,726 - 192,114,593 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	191,996,730 - 192,114,359 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	200,365,993 - 200,483,688 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	207,516,764 - 207,634,175 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	200,190,207 - 200,307,625 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	209,523,153 - 209,641,143 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	209,523,157 - 209,641,123 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	216,447,386 - 216,565,414 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	196,927,457 - 197,045,432 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	189,703,632 - 189,821,535 (-)	NCBI		Celera
RGSC_v3.1	1	197,078,423 - 197,199,341 (-)	NCBI
Cytogenetic Map	1	q41	NCBI

EBF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	129,835,233 - 129,964,274 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	129,835,233 - 129,973,053 (-)	Ensembl			hg38	GRCh38
GRCh37	10	131,633,497 - 131,762,538 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	131,523,537 - 131,652,081 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	125,305,470 - 125,434,003 (-)	NCBI		Celera
Cytogenetic Map	10	q26.3	NCBI
HuRef	10	125,212,114 - 125,349,388 (-)	NCBI		HuRef
CHM1_1	10	131,916,175 - 132,044,674 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	130,762,552 - 130,891,466 (-)	NCBI		T2T-CHM13v2.0

Ebf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	136,795,400 - 136,924,528 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	136,795,402 - 136,916,174 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	137,193,671 - 137,322,805 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	137,193,673 - 137,314,445 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	144,385,354 - 144,506,128 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	137,032,064 - 137,152,788 (-)	NCBI		MGSCv36	mm8
Celera	7	137,016,552 - 137,137,034 (-)	NCBI		Celera
Cytogenetic Map	7	F3- F4	NCBI
cM Map	7	82.26	NCBI

Ebf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	7,434,482 - 7,556,504 (-)	Ensembl
ChiLan1.0	NW_004955477	7,435,324 - 7,557,212 (-)	NCBI	ChiLan1.0	ChiLan1.0

EBF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	141,731,104 - 141,858,956 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	141,735,293 - 141,864,303 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	126,432,326 - 126,561,328 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	130,677,182 - 130,802,938 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

EBF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	38,489,635 - 38,601,800 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	38,491,047 - 38,602,022 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	38,542,665 - 38,659,895 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	39,120,376 - 39,238,361 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	39,122,005 - 39,238,834 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	38,608,040 - 38,725,405 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	38,596,440 - 38,713,612 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	38,850,384 - 38,967,766 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ebf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	8,469,094 - 8,584,807 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	16,976,442 - 17,092,228 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	16,978,048 - 17,092,209 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EBF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	138,819,848 - 138,935,462 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	138,819,846 - 138,935,504 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	150,935,557 - 151,051,854 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EBF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	122,443,492 - 122,572,089 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	83,826,173 - 83,954,871 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ebf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	17,078,683 - 17,201,536 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	17,069,676 - 17,201,481 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ebf3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	64,636,210 - 64,753,745 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ebf3
314 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	718
Count of miRNA genes:	290
Interacting mature miRNAs:	368
Transcripts:	ENSRNOT00000021702
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	177339686	222339686	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	181059071	226059071	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	181059071	226059071	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	153679879	205813246	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	182039247	227039247	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	183564652	228564652	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	160573753	210707719	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	181059071	226059071	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	160573753	210707719	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	165278545	210278545	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	181059071	226059071	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	161077990	206077990	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	168063662	213063662	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	159894717	207261263	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	163992710	208992710	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	182535316	227535316	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	181059071	226059071	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	181059071	226059071	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
1359018	Hrtrt20	Heart rate QTL 20	3.08		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	194786607	207590403	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	162753891	207753891	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	180739993	225739993	Rat
61378	Bp43	Blood pressure QTL 43	22.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	191177449	205813246	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	191190115	223964326	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	172718770	228180370	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	178547286	206690557	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	185979875	230979875	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	197807365	233480676	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	210707719	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	165707719	210707719	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	173363824	227535316	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2325727	Pia41	Pristane induced arthritis QTL 41			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	188241285	233241285	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	210707719	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	183564652	205813246	Rat

Markers in Region

D1Got178

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	192,076,289 - 192,076,410 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	209,602,714 - 209,602,834	NCBI	Rnor6.0
Rnor_5.0	1	216,526,947 - 216,527,067	UniSTS	Rnor5.0
RGSC_v3.4	1	197,007,010 - 197,007,131	RGD	RGSC3.4
RGSC_v3.4	1	197,007,011 - 197,007,131	UniSTS	RGSC3.4
Celera	1	189,783,176 - 189,783,296	UniSTS
RGSC_v3.1	1	197,157,003 - 197,157,123	RGD
RH 3.4 Map	1	1421.6	UniSTS
RH 3.4 Map	1	1421.6	RGD
RH 2.0 Map	1	1028.6	RGD
Cytogenetic Map	1	q41	UniSTS

D20S589E

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	192,033,040 - 192,033,718 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	209,559,466 - 209,560,143	NCBI	Rnor6.0
Rnor_5.0	1	216,483,699 - 216,484,376	UniSTS	Rnor5.0
RGSC_v3.4	1	196,963,766 - 196,964,443	UniSTS	RGSC3.4
Celera	1	189,739,955 - 189,740,632	UniSTS
Cytogenetic Map	1	q41	UniSTS

Ebf3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	191,998,509 - 191,999,408 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	209,524,937 - 209,525,835	NCBI	Rnor6.0
Rnor_5.0	1	216,449,170 - 216,450,068	UniSTS	Rnor5.0
Celera	1	189,705,412 - 189,706,310	UniSTS
Cytogenetic Map	1	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	65	140	88	87	56	37	56	6	282	135	11	119	69	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021702 ⟹ ENSRNOP00000021702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	201,426,450 - 201,544,305 (-)	Ensembl
mRatBN7.2 Ensembl	1	191,996,730 - 192,114,359 (-)	Ensembl
Rnor_6.0 Ensembl	1	209,523,157 - 209,641,123 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107995 ⟹ ENSRNOP00000082695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	201,429,968 - 201,544,305 (-)	Ensembl
mRatBN7.2 Ensembl	1	192,000,248 - 192,114,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115779 ⟹ ENSRNOP00000085956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	201,428,106 - 201,544,305 (-)	Ensembl
mRatBN7.2 Ensembl	1	191,997,703 - 192,114,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000157206 ⟹ ENSRNOP00000108791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	201,429,461 - 201,544,305 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162603 ⟹ ENSRNOP00000107429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	201,428,544 - 201,544,305 (-)	Ensembl

RefSeq Acc Id:

NM_001108506 ⟹ NP_001101976

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,450 - 201,544,305 (-)	NCBI
mRatBN7.2	1	191,996,730 - 192,114,593 (-)	NCBI
Rnor_6.0	1	209,523,157 - 209,641,123 (-)	NCBI
Rnor_5.0	1	216,447,386 - 216,565,414 (-)	NCBI
RGSC_v3.4	1	196,927,457 - 197,045,432 (-)	RGD
Celera	1	189,703,632 - 189,821,535 (-)	RGD

Sequence:

show sequence

TGTGCGCCTCCGTCCGCTGCGCGCGCCGCTCCAGGCCCCGCCGCGCCCCGCCTGCGCCCGGGAC
TGCGCCGCGGCACTCACTGCTCCGTTTATTTGTCTTTGGAGCAGGCGGGCCGCGCCAGAAGCGG
GCGATCCCGCAGTGTCCTGCAGCCGCGGACGCCGCCTGGCTAGGATGACACCACGTTGAGCGCG
CCTGCAAACAACAACAACAACAAGCGCCGCCGCGGCCACCGCGTCCACCGCGCCCTGCTCCTCC
GAAGCGCCGCGCCGCCGCCGGTGCAGTCCGCCCGCGTCCCCGGCCGTCCGCAGCGCCCGGCCGC
CGGTGTATGCCGCGCCTGCCCGGGACGGGCTCGCCGCCGACCGCGGACGCGCTTTCGGCTGGGA
GTCGCGGCCGCTGCCAGCAGTGTTCATGTTTGGGATTCAGGAGAATATTCCGCGCGGGGGGACG
ACCATGAAGGAGGAGCCGCTGGGCAGCGGCATGAACCCGGTGCGCTCGTGGATGCACACGGCAG
GCGTGGTGGACGCCAACACGGCCGCCCAGAGCGGCGTGGGGCTGGCGCGGGCGCACTTCGAGAA
GCAGCCTCCTTCCAACCTCCGGAAATCCAATTTCTTCCACTTCGTGCTGGCGCTCTACGACAGG
CAGGGGCAGCCGGTGGAGATCGAAAGGACCGCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGC
CGAATAACGAGAAAACCAACAACGGCATTCACTACAAGCTGCAGCTACTGTACAGCAATGGCGT
CAGGACAGAGCAAGATCTGTATGTCCGCCTCATAGATTCAATGACCAAACAGGCCATCGTGTAT
GAAGGCCAGGACAAAAATCCGGAGATGTGCCGCGTGCTGCTGACCCATGAGATCATGTGCAGCC
GGTGCTGTGACAAGAAGAGTTGTGGCAATAGGAACGAAACACCCTCAGACCCTGTAATCATTGA
CAGATTCTTTCTAAAGTTCTTCCTCAAGTGCAATCAGAACTGCTTGAAGAATGCGGGCAACCCT
CGGGACATGCGGAGGTTCCAGGTCGTTGTATCGACAACCGTCAACGTGGACGGCCACGTGCTGG
CCGTGTCTGACAACATGTTTGTGCACAACAATTCCAAACACGGGAGGCGGGCCCGCCGCCTAGA
CCCGTCAGAAGGTACGGCCCCTTCTTATCTGGAAAATGCCACTCCATGCATCAAGGCCATCAGC
CCCAGTGAAGGCTGGACCACGGGGGGCGCCACTGTGATCATAATCGGGGACAACTTCTTTGACG
GTCTCCAAGTTGTGTTCGGAACTATGTTGGTGTGGAGTGAGCTGATAACCCCCCACGCCATCCG
AGTGCAGACGCCGCCGCGACACATCCCTGGAGTTGTTGAAGTGACCCTCTCCTACAAGTCTAAG
CAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTACACTGCCCTTAATGAGCCAACCATAGATT
ACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTGACCCCGAAAGGTTACCCAA
GGAAGTGTTACTGAAGAGGGCGGCAGACCTTGTGGAAGCCTTGTATGGGATGCCTCATAACAAC
CAGGAGATCATCCTGAAGAGAGCAGCCGACATTGCTGAGGCACTGTACAGCGTTCCCCGCAATC
ACAACCAGATCCCCACCTTGGGCAACACTCCAGCACACACTGGCATGATGGGTGTGAACTCCTT
CAGCAGCCAGCTAGCCGTTAATGTGTCAGAGACCTCACAAGCCAATGACCAAGTCGGCTACAGT
CGCAATACAAGCAGCGTGTCCCCGCGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTCCAATT
ACAACACAGTCAGCACTAGCATGAATGGATATGGAAGTGGCGCCATGGCCAATCTAGGGGTCCC
TGGCTCGCCTGGATTTCTTAATGGCTCCTCCGCTAACTCTCCCTACGGCATAGTGCCGTCCAGC
CCCACCATGGCAGCCTCTTCGGTCACCCTCCCTTCAAACTGTAGCAGCACACACGGCATTTTCT
CATTCTCACCTGCCAATGTCATCTCCGCAGTGAAACAGAAGAGCGCTTTCGCGCCCGTGGTCCG
GCCCCAAGCCTCGCCTCCTCCTTCCTGCACCAGCGCCAATGGGAACGGACTTCAAGCTATGTCT
GGGCTGGTAGTCCCGCCCATGTGAGGGACTCTGTTTACCTTCACAGCACCCAGCATCCAAGGAC
GGACTTCAGGGGACACGTGTAGTGTGCTAAGACGTGCTGATGGAAATGCTATCTCCAAAACTAA
AAATCAGCAACGGTTGAATGCTACAAAAGACATTTAAAGATTTTATTTAAACTGTTAAGAATCA
ACACGCGAACAAGCCTACTCCTTCATGAACAATTCCATTTTATTGACTGAACTTTTCTCACATC
TTCACATTTCTCAGTCCTGAAGATTAAGGAAAACAAAGCGATGCCTATTTTGTATAAAGTTTCT
GATTCCGTCTTGGCTGTCTAGTGCGTGCTATCTGTGTGGGGAGAAGCTTCGTGAATATGCACCG
TTTTGATGCCCATGCAACACTGAGGAAGAAAGCCTCGAAACATTTTTCTGTACTCATATTTAGA
TTCACAATGGTTGTGTATCTCTATAATGTGAAATATTTTTTTGTGGTGAAAAAAAGGGGGCCAA
GGAGGTATGAGCCATTAACTGGAACAGAGGAGGATTATGACTAGGTGAATTTGGGGTGGCAGGG
AGGGAGGGAGGGTTTATCATTGCTTAACTTCATCTTAATGAAATGAAACTTTGTAACTTATTGT
AGTTAGAAATTGTAACTTTGATATCGAATCTCTTGCCTTCAACAAGCACACTGACAGAGAAAAA
GATTATGCTACTGTCTGTTGGTTCCAATATTCTCCCACCTAGAGCTTCCTGTTAAAGCAAGTGC
GGTCAGCAACATTTTTTCAACTTTCACGCACTGTAAACCTATTGCATTCTTAGGCTACTGTGAG
GTCTATGTTTCTTGTACCTGAAATTGTCCTTTTGACTTCTAGACCCTTCTTCCCCGATGTGTTT
TGTATGTGGTTATAAAATTGTAGACTTTTGTGATTTTGCCAAAGTTGTAGCTAAATATTTATAC
ACTTGTCTTGAATTTTTTTCAGATCCACTTAAAATATTTAGAAAAATGAGTTTTATTCCTTATG
TGTCTTATAGGGGATAAAATGCTCTCTCACGTGACGCTTCCTTTCCCATGAACACTTGCAGTTG
CTAAGGGACTTTATTTTGTAACATATCAATTATAAATATTGTATTTATCTTTGAAATTTTGTAC
ATTGCTTTCCCTGCCTTCTTTTTTTCACGTCTGTATTGGTGTTTGATCTGCCCAGTGTTGAAGC
ATAGGGAACGAGCAGACACCAAGAGCTTGTCTCTTTAATCCGTTTTGTTGAAGTGAACCAATGT
CCTTACATTTCATTTGTACCTAAACCATTTGCTATCGTTTAGACTTTCCATCCCCCACCCCTTT
TTTTATGTTGAGGAAAAGTCAAATTCATTGTTTATTTTTATATTATTTTTAAGTTATCTGAACA
AATACTTTTGAAAAGAAAAGTTTGTTGTATAGTCAAAAGAAAACGGTGTCAGCCGGCCGTGACA
AATTCTAGTAGGTTCTGTGCATGTGGAGCGGCCGTGAAGGGGCCACACCGTCCAGGCTGTGTTC
TTATTTTATTTTTAATTTTTAATTTTTTTCGTAGAATGTAAAAAAAAAGTCATTTTAGCTGCCA
CCTATGACTTTGCCACATAGCTGAACTGTGTTTACTGGAAAAATTCAGAGGCCTAAAGTTTAAA
ATAAAATTTACTTCCGACGTTTTAATTACAAATGTTTGCCACATTAACTTCTCTGATGCCTTAA
AAGTGGACTTCTTTGAAGAACTTCTGTGCTATTTTATCACAGGCTCACACCACAATTGTTAATA
TCTGGAGATGGGTGATGAACACACACACACACACACACACACACACACACACACACACACACAC
ACACAGGCCAAAAGCACAAACCTCCAGTCTGCCAGTCACTTCTTCCTGGGTCTGCCTGCTGCTT
TCTGCTCTCTTTAGCTCACCTTGGAGTTAGAGAGGCATTGGGGGACACTGCTGGTTAGTTCATT
TTTATTTTAAACAGGACCTTTTTGTGGTCAGATCCAACAGCACTGTCTGTACATTTTTAACTGG
AAAGACCTCCTTCAGACACTCCGCCTCTTAGTGCCAAACCCACCGTGAGACCAAGAAACAGGAC
TCTTTTTTTTCCCTTCACACTCATTGCTCTCACAGACAGCGCAGGCCTTGCAAACAGCAGCAGA
AGTCACATTTAAAACAAAAAGGAGGGGACTTACAAAACTTAGACAAACACCTTCACGAAGGAAT
GACATAGAGCTTAGCAAGTGTTCATTCGAGGGACTCAATACGAGTAACAGAACGTCCCCAAGGG
TCAGTGGGCCACACTCTGGCTTTGTGGCTGCTGACAGGGCTTAGCTACATGAACAGCCTGAGAA
GTCACTTTGGAACTAAATTGCCTCGATTTATTTTGTGTAAGGAAGGGTTTGACCTAAAAAGAGC
TCATGTGCACATTAGTCCGCATCCTCATGTCCGCACCCGGTTTGTGTTTTAGATCAACTAGTCA
ACGCCCTCATTGCTTCATTGTGTCAAAAACCGAGAGCTTCACTAAATGGTAGATTTTGCTGTCA
GAGACCCTACAATAAGATTGTTTTATCTGTACATTTTTTCAGATATTTAACTGTATAAAATGTT
CATTTTACACAATATTTAATTAAAGTATTTCTTGTCTGTGAAT

hide sequence

RefSeq Acc Id:

NM_001415982 ⟹ NP_001402911

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,446 - 201,544,305 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,593 (-)	NCBI

RefSeq Acc Id:

XM_006230462 ⟹ XP_006230524

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,441 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI
Rnor_6.0	1	209,523,153 - 209,641,142 (-)	NCBI
Rnor_5.0	1	216,447,386 - 216,565,414 (-)	NCBI

Sequence:

show sequence

GGGAGAGAGGGCTGAGTTTTGTGCGCCTCCGTCCGCTGCGCGCGCCGCTCCAGGCCCCGCCGCG
CCCCGCCTGCGCCCGGGACTGCGCCGCGGCACTCACTGCTCCGTTTATTTGTCTTTGGAGCAGG
CGGGCCGCGCCAGAAGCGGGCGATCCCGCAGTGTCCTGCAGCCGCGGACGCCGCCTGGCTAGGA
TGACACCACGTTGAGCGCGCCTGCAAACAACAACAACAACAAGCGCCGCCGCGGCCACCGCGTC
CACCGCGCCCTGCTCCTCCGAAGCGCCGCGCCGCCGCCGGTGCAGTCCGCCCGCGTCCCCGGCC
GTCCGCAGCGCCCGGCCGCCGGTGTATGCCGCGCCTGCCCGGGACGGGCTGAAGCCGGCGGCGG
GCCGCACCGCAGGCGCCGAGCAGGGCCAGGGCGGCCAGGGCAGCCTCCTGCCGCCGAGCCCCGA
GCGCCGCCGACCGCGGACGCGCTTTCGGCTGGGAGTCGCGGCCGCTGCCAGCAGTGTTCATGTT
TGGGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGC
ATGAACCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGA
GCGGCGTGGGGCTGGCGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAA
TTTCTTCCACTTCGTGCTGGCGCTCTACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACC
GCTTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCCGAATAACGAGAAAACCAACAACGGCATTC
ACTACAAGCTGCAGCTACTGTACAGCAATGGCGTCAGGACAGAGCAAGATCTGTATGTCCGCCT
CATAGATTCAATGACCAAACAGGCCATCGTGTATGAAGGCCAGGACAAAAATCCGGAGATGTGC
CGCGTGCTGCTGACCCATGAGATCATGTGCAGCCGGTGCTGTGACAAGAAGAGTTGTGGCAATA
GGAACGAAACACCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTCTTCCTCAAGTG
CAATCAGAACTGCTTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGGTTCCAGGTCGTTGTA
TCGACAACCGTCAACGTGGACGGCCACGTGCTGGCCGTGTCTGACAACATGTTTGTGCACAACA
ATTCCAAACACGGGAGGCGGGCCCGCCGCCTAGACCCGTCAGAAGGTACGGCCCCTTCTTATCT
GGAAAATGCCACTCCATGCATCAAGGCCATCAGCCCCAGTGAAGGCTGGACCACGGGGGGCGCC
ACTGTGATCATAATCGGGGACAACTTCTTTGACGGTCTCCAAGTTGTGTTCGGAACTATGTTGG
TGTGGAGTGAGCTGATAACCCCCCACGCCATCCGAGTGCAGACGCCGCCGCGACACATCCCTGG
AGTTGTTGAAGTGACCCTCTCCTACAAGTCTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTT
GTCTACACTGCCCTTAATGAGCCAACCATAGATTACGGCTTCCAGAGGTTGCAGAAAGTGATAC
CCAGACATCCAGGTGACCCCGAAAGGTTACCCAAGGAAGTGTTACTGAAGAGGGCGGCAGACCT
TGTGGAAGCCTTGTATGGGATGCCTCATAACAACCAGGAGATCATCCTGAAGAGAGCAGCCGAC
ATTGCTGAGGCACTGTACAGCGTTCCCCGCAATCACAACCAGATCCCCACCTTGGGCAACACTC
CAGCACACACTGGCATGATGGGTGTGAACTCCTTCAGCAGCCAGCTAGCCGTTAATGTGTCAGA
GACCTCACAAGCCAATGACCAAGTCGGCTACAGTCGCAATACAAGCAGCGTGTCCCCGCGAGGC
TACGTCCCCAGCAGTACTCCCCAGCAGTCCAATTACAACACAGTCAGCACTAGCATGAATGGAT
ATGGAAGTGGCGCCATGGCCAATCTAGGGGTCCCTGGCTCGCCTGGATTTCTTAATGGCTCCTC
CGCTAACTCTCCCTACGGCATAGTGCCGTCCAGCCCCACCATGGCAGCCTCTTCGGTCACCCTC
CCTTCAAACTGTAGCAGCACACACGGCATTTTCTCATTCTCACCTGCCAATGTCATCTCCGCAG
TGAAACAGAAGAGCGCTTTCGCGCCCGTGGTCCGGCCCCAAGCCTCGCCTCCTCCTTCCTGCAC
CAGCGCCAATGGGAACGGACTTCAAGGCTCTCTGCTGGGTGCCGAGGACGCAACCGTGGAGAAG
ACAAACTGGCCCTTTTGTGAAGTCGGTGGTATATTCCACTTTGATGAACTAATGCTCAAAAAAG
GAACTGGAAAGCTATGTCTGGGCTGGTAGTCCCGCCCATGTGAGGGACTCTGTTTACCTTCACA
GCACCCAGCATCCAAGGACGGACTTCAGGGGACACGTGTAGTGTGCTAAGACGTGCTGATGGAA
ATGCTATCTCCAAAACTAAAAATCAGCAACGGTTGAATGCTACAAAAGACATTTAAAGATTTTA
TTTAAACTGTTAAGAATCAACACGCGAACAAGCCTACTCCTTCATGAACAATTCCATTTTATTG
ACTGAACTTTTCTCACATCTTCACATTTCTCAGTCCTGAAGATTAAGGAAAACAAAGCGATGCC
TATTTTGTATAAAGTTTCTGATTCCGTCTTGGCTGTCTAGTGCGTGCTATCTGTGTGGGGAGAA
GCTTCGTGAATATGCACCGTTTTGATGCCCATGCAACACTGAGGAAGAAAGCCTCGAAACATTT
TTCTGTACTCATATTTAGATTCACAATGGTTGTGTATCTCTATAATGTGAAATATTTTTTTGTG
GTGAAAAAAAGGGGGCCAAGGAGGTATGAGCCATTAACTGGAACAGAGGAGGATTATGACTAGG
TGAATTTGGGGTGGCAGGGAGGGAGGGAGGGTTTATCATTGCTTAACTTCATCTTAATGAAATG
AAACTTTGTAACTTATTGTAGTTAGAAATTGTAACTTTGATATCGAATCTCTTGCCTTCAACAA
GCACACTGACAGAGAAAAAGATTATGCTACTGTCTGTTGGTTCCAATATTCTCCCACCTAGAGC
TTCCTGTTAAAGCAAGTGCGGTCAGCAACATTTTTTCAACTTTCACGCACTGTAAACCTATTGC
ATTCTTAGGCTACTGTGAGGTCTATGTTTCTTGTACCTGAAATTGTCCTTTTGACTTCTAGACC
CTTCTTCCCCGATGTGTTTTGTATGTGGTTATAAAATTGTAGACTTTTGTGATTTTGCCAAAGT
TGTAGCTAAATATTTATACACTTGTCTTGAATTTTTTTCAGATCCACTTAAAATATTTAGAAAA
ATGAGTTTTATTCCTTATGTGTCTTATAGGGGATAAAATGCTCTCTCACGTGACGCTTCCTTTC
CCATGAACACTTGCAGTTGCTAAGGGACTTTATTTTGTAACATATCAATTATAAATATTGTATT
TATCTTTGAAATTTTGTACATTGCTTTCCCTGCCTTCTTTTTTTCACGTCTGTATTGGTGTTTG
ATCTGCCCAGTGTTGAAGCATAGGGAACGAGCAGACACCAAGAGCTTGTCTCTTTAATCCGTTT
TGTTGAAGTGAACCAATGTCCTTACATTTCATTTGTACCTAAACCATTTGCTATCGTTTAGACT
TTCCATCCCCCACCCCTTTTTTTATGTTGAGGAAAAGTCAAATTCATTGTTTATTTTTATATTA
TTTTTAAGTTATCTGAACAAATACTTTTGAAAAGAAAAGTTTGTTGTATAGTCAAAAGAAAACG
GTGTCAGCCGGCCGTGACAAATTCTAGTAGGTTCTGTGCATGTGGAGCGGCCGTGAAGGGGCCA
CACCGTCCAGGCTGTGTTCTTATTTTATTTTTAATTTTTAATTTTTTTCGTAGAATGTAAAAAA
AAAGTCATTTTAGCTGCCACCTATGACTTTGCCACATAGCTGAACTGTGTTTACTGGAAAAATT
CAGAGGCCTAAAGTTTAAAATAAAATTTACTTCCGACGTTTTAATTACAAATGTTTGCCACATT
AACTTCTCTGATGCCTTAAAAGTGGACTTCTTTGAAGAACTTCTGTGCTATTTTATCACAGGCT
CACACCACAATTGTTAATATCTGGAGATGGGTGATGAACACACACACACACACACACACACACA
CACACACACACACACACACACACAGGCCAAAAGCACAAACCTCCAGTCTGCCAGTCACTTCTTC
CTGGGTCTGCCTGCTGCTTTCTGCTCTCTTTAGCTCACCTTGGAGTTAGAGAGGCATTGGGGGA
CACTGCTGGTTAGTTCATTTTTATTTTAAACAGGACCTTTTTGTGGTCAGATCCAACAGCACTG
TCTGTACATTTTTAACTGGAAAGACCTCCTTCAGACACTCCGCCTCTTAGTGCCAAACCCACCG
TGAGACCAAGAAACAGGACTCTTTTTTTTCCCTTCACACTCATTGCTCTCACAGACAGCGCAGG
CCTTGCAAACAGCAGCAGAAGTCACATTTAAAACAAAAAGGAGGGGACTTACAAAACTTAGACA
AACACCTTCACGAAGGAATGACATAGAGCTTAGCAAGTGTTCATTCGAGGGACTCAATACGAGT
AACAGAACGTCCCCAAGGGTCAGTGGGCCACACTCTGGCTTTGTGGCTGCTGACAGGGCTTAGC
TACATGAACAGCCTGAGAAGTCACTTTGGAACTAAATTGCCTCGATTTATTTTGTGTAAGGAAG
GGTTTGACCTAAAAAGAGCTCATGTGCACATTAGTCCGCATCCTCATGTCCGCACCCGGTTTGT
GTTTTAGATCAACTAGTCAACGCCCTCATTGCTTCATTGTGTCAAAAACCGAGAGCTTCACTAA
ATGGTAGATTTTGCTGTCAGAGACCCTACAATAAGATTGTTTTATCTGTACATTTTTTCAGATA
TTTAACTGTATAAAATGTTCATTTTACACAATATTTAATTAAAGTATTTCTTGTCTGTGAATTT
CA

hide sequence

RefSeq Acc Id:

XM_006230464 ⟹ XP_006230526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,438 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI
Rnor_6.0	1	209,523,153 - 209,641,140 (-)	NCBI
Rnor_5.0	1	216,447,386 - 216,565,414 (-)	NCBI

Sequence:

show sequence

GAGAGAGGGCTGAGTTTTGTGCGCCTCCGTCCGCTGCGCGCGCCGCTCCAGGCCCCGCCGCGCC
CCGCCTGCGCCCGGGACTGCGCCGCGGCACTCACTGCTCCGTTTATTTGTCTTTGGAGCAGGCG
GGCCGCGCCAGAAGCGGGCGATCCCGCAGTGTCCTGCAGCCGCGGACGCCGCCTGGCTAGGATG
ACACCACGTTGAGCGCGCCTGCAAACAACAACAACAACAAGCGCCGCCGCGGCCACCGCGTCCA
CCGCGCCCTGCTCCTCCGAAGCGCCGCGCCGCCGCCGGTGCAGTCCGCCCGCGTCCCCGGCCGT
CCGCAGCGCCCGGCCGCCGGTGTATGCCGCGCCTGCCCGGGACGGGCTGAAGCCGGCGGCGGGC
CGCACCGCAGGCGCCGAGCAGGGCCAGGGCGGCCAGGGCAGCCTCCTGCCGCCGAGCCCCGAGC
GCCGCCGACCGCGGACGCGCTTTCGGCTGGGAGTCGCGGCCGCTGCCAGCAGTGTTCATGTTTG
GGATTCAGGAGAATATTCCGCGCGGGGGGACGACCATGAAGGAGGAGCCGCTGGGCAGCGGCAT
GAACCCGGTGCGCTCGTGGATGCACACGGCAGGCGTGGTGGACGCCAACACGGCCGCCCAGAGC
GGCGTGGGGCTGGCGCGGGCGCACTTCGAGAAGCAGCCTCCTTCCAACCTCCGGAAATCCAATT
TCTTCCACTTCGTGCTGGCGCTCTACGACAGGCAGGGGCAGCCGGTGGAGATCGAAAGGACCGC
TTTTGTGGACTTTGTGGAGAAAGAGAAAGAGCCGAATAACGAGAAAACCAACAACGGCATTCAC
TACAAGCTGCAGCTACTGTACAGCAATGGCGTCAGGACAGAGCAAGATCTGTATGTCCGCCTCA
TAGATTCAATGACCAAACAGGCCATCGTGTATGAAGGCCAGGACAAAAATCCGGAGATGTGCCG
CGTGCTGCTGACCCATGAGATCATGTGCAGCCGGTGCTGTGACAAGAAGAGTTGTGGCAATAGG
AACGAAACACCCTCAGACCCTGTAATCATTGACAGATTCTTTCTAAAGTTCTTCCTCAAGTGCA
ATCAGAACTGCTTGAAGAATGCGGGCAACCCTCGGGACATGCGGAGGTTCCAGGTCGTTGTATC
GACAACCGTCAACGTGGACGGCCACGTGCTGGCCGTGTCTGACAACATGTTTGTGCACAACAAT
TCCAAACACGGGAGGCGGGCCCGCCGCCTAGACCCGTCAGAAGCCACTCCATGCATCAAGGCCA
TCAGCCCCAGTGAAGGCTGGACCACGGGGGGCGCCACTGTGATCATAATCGGGGACAACTTCTT
TGACGGTCTCCAAGTTGTGTTCGGAACTATGTTGGTGTGGAGTGAGCTGATAACCCCCCACGCC
ATCCGAGTGCAGACGCCGCCGCGACACATCCCTGGAGTTGTTGAAGTGACCCTCTCCTACAAGT
CTAAGCAGTTCTGCAAAGGCGCTCCTGGACGCTTTGTCTACACTGCCCTTAATGAGCCAACCAT
AGATTACGGCTTCCAGAGGTTGCAGAAAGTGATACCCAGACATCCAGGTGACCCCGAAAGGTTA
CCCAAGGAAGTGTTACTGAAGAGGGCGGCAGACCTTGTGGAAGCCTTGTATGGGATGCCTCATA
ACAACCAGGAGATCATCCTGAAGAGAGCAGCCGACATTGCTGAGGCACTGTACAGCGTTCCCCG
CAATCACAACCAGATCCCCACCTTGGGCAACACTCCAGCACACACTGGCATGATGGGTGTGAAC
TCCTTCAGCAGCCAGCTAGCCGTTAATGTGTCAGAGACCTCACAAGCCAATGACCAAGTCGGCT
ACAGTCGCAATACAAGCAGCGTGTCCCCGCGAGGCTACGTCCCCAGCAGTACTCCCCAGCAGTC
CAATTACAACACAGTCAGCACTAGCATGAATGGATATGGAAGTGGCGCCATGGCCAATCTAGGG
GTCCCTGGCTCGCCTGGATTTCTTAATGGCTCCTCCGCTAACTCTCCCTACGGCATAGTGCCGT
CCAGCCCCACCATGGCAGCCTCTTCGGTCACCCTCCCTTCAAACTGTAGCAGCACACACGGCAT
TTTCTCATTCTCACCTGCCAATGTCATCTCCGCAGTGAAACAGAAGAGCGCTTTCGCGCCCGTG
GTCCGGCCCCAAGCCTCGCCTCCTCCTTCCTGCACCAGCGCCAATGGGAACGGACTTCAAGCTA
TGTCTGGGCTGGTAGTCCCGCCCATGTGAGGGACTCTGTTTACCTTCACAGCACCCAGCATCCA
AGGACGGACTTCAGGGGACACGTGTAGTGTGCTAAGACGTGCTGATGGAAATGCTATCTCCAAA
ACTAAAAATCAGCAACGGTTGAATGCTACAAAAGACATTTAAAGATTTTATTTAAACTGTTAAG
AATCAACACGCGAACAAGCCTACTCCTTCATGAACAATTCCATTTTATTGACTGAACTTTTCTC
ACATCTTCACATTTCTCAGTCCTGAAGATTAAGGAAAACAAAGCGATGCCTATTTTGTATAAAG
TTTCTGATTCCGTCTTGGCTGTCTAGTGCGTGCTATCTGTGTGGGGAGAAGCTTCGTGAATATG
CACCGTTTTGATGCCCATGCAACACTGAGGAAGAAAGCCTCGAAACATTTTTCTGTACTCATAT
TTAGATTCACAATGGTTGTGTATCTCTATAATGTGAAATATTTTTTTGTGGTGAAAAAAAGGGG
GCCAAGGAGGTATGAGCCATTAACTGGAACAGAGGAGGATTATGACTAGGTGAATTTGGGGTGG
CAGGGAGGGAGGGAGGGTTTATCATTGCTTAACTTCATCTTAATGAAATGAAACTTTGTAACTT
ATTGTAGTTAGAAATTGTAACTTTGATATCGAATCTCTTGCCTTCAACAAGCACACTGACAGAG
AAAAAGATTATGCTACTGTCTGTTGGTTCCAATATTCTCCCACCTAGAGCTTCCTGTTAAAGCA
AGTGCGGTCAGCAACATTTTTTCAACTTTCACGCACTGTAAACCTATTGCATTCTTAGGCTACT
GTGAGGTCTATGTTTCTTGTACCTGAAATTGTCCTTTTGACTTCTAGACCCTTCTTCCCCGATG
TGTTTTGTATGTGGTTATAAAATTGTAGACTTTTGTGATTTTGCCAAAGTTGTAGCTAAATATT
TATACACTTGTCTTGAATTTTTTTCAGATCCACTTAAAATATTTAGAAAAATGAGTTTTATTCC
TTATGTGTCTTATAGGGGATAAAATGCTCTCTCACGTGACGCTTCCTTTCCCATGAACACTTGC
AGTTGCTAAGGGACTTTATTTTGTAACATATCAATTATAAATATTGTATTTATCTTTGAAATTT
TGTACATTGCTTTCCCTGCCTTCTTTTTTTCACGTCTGTATTGGTGTTTGATCTGCCCAGTGTT
GAAGCATAGGGAACGAGCAGACACCAAGAGCTTGTCTCTTTAATCCGTTTTGTTGAAGTGAACC
AATGTCCTTACATTTCATTTGTACCTAAACCATTTGCTATCGTTTAGACTTTCCATCCCCCACC
CCTTTTTTTATGTTGAGGAAAAGTCAAATTCATTGTTTATTTTTATATTATTTTTAAGTTATCT
GAACAAATACTTTTGAAAAGAAAAGTTTGTTGTATAGTCAAAAGAAAACGGTGTCAGCCGGCCG
TGACAAATTCTAGTAGGTTCTGTGCATGTGGAGCGGCCGTGAAGGGGCCACACCGTCCAGGCTG
TGTTCTTATTTTATTTTTAATTTTTAATTTTTTTCGTAGAATGTAAAAAAAAAGTCATTTTAGC
TGCCACCTATGACTTTGCCACATAGCTGAACTGTGTTTACTGGAAAAATTCAGAGGCCTAAAGT
TTAAAATAAAATTTACTTCCGACGTTTTAATTACAAATGTTTGCCACATTAACTTCTCTGATGC
CTTAAAAGTGGACTTCTTTGAAGAACTTCTGTGCTATTTTATCACAGGCTCACACCACAATTGT
TAATATCTGGAGATGGGTGATGAACACACACACACACACACACACACACACACACACACACACA
CACACACACAGGCCAAAAGCACAAACCTCCAGTCTGCCAGTCACTTCTTCCTGGGTCTGCCTGC
TGCTTTCTGCTCTCTTTAGCTCACCTTGGAGTTAGAGAGGCATTGGGGGACACTGCTGGTTAGT
TCATTTTTATTTTAAACAGGACCTTTTTGTGGTCAGATCCAACAGCACTGTCTGTACATTTTTA
ACTGGAAAGACCTCCTTCAGACACTCCGCCTCTTAGTGCCAAACCCACCGTGAGACCAAGAAAC
AGGACTCTTTTTTTTCCCTTCACACTCATTGCTCTCACAGACAGCGCAGGCCTTGCAAACAGCA
GCAGAAGTCACATTTAAAACAAAAAGGAGGGGACTTACAAAACTTAGACAAACACCTTCACGAA
GGAATGACATAGAGCTTAGCAAGTGTTCATTCGAGGGACTCAATACGAGTAACAGAACGTCCCC
AAGGGTCAGTGGGCCACACTCTGGCTTTGTGGCTGCTGACAGGGCTTAGCTACATGAACAGCCT
GAGAAGTCACTTTGGAACTAAATTGCCTCGATTTATTTTGTGTAAGGAAGGGTTTGACCTAAAA
AGAGCTCATGTGCACATTAGTCCGCATCCTCATGTCCGCACCCGGTTTGTGTTTTAGATCAACT
AGTCAACGCCCTCATTGCTTCATTGTGTCAAAAACCGAGAGCTTCACTAAATGGTAGATTTTGC
TGTCAGAGACCCTACAATAAGATTGTTTTATCTGTACATTTTTTCAGATATTTAACTGTATAAA
ATGTTCATTTTACACAATATTTAATTAAAGTATTTCTTGTCTGTGAATTTCA

hide sequence

RefSeq Acc Id:

XM_039083357 ⟹ XP_038939285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,442 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083361 ⟹ XP_038939289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,440 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083366 ⟹ XP_038939294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,440 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083378 ⟹ XP_038939306

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,438 (-)	NCBI
mRatBN7.2	1	191,999,387 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083383 ⟹ XP_038939311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,444 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083384 ⟹ XP_038939312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,438 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083394 ⟹ XP_038939322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,442 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083400 ⟹ XP_038939328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,442 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083406 ⟹ XP_038939334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,440 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_039083413 ⟹ XP_038939341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,440 (-)	NCBI
mRatBN7.2	1	191,996,726 - 192,114,261 (-)	NCBI

RefSeq Acc Id:

XM_063267948 ⟹ XP_063124018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	201,426,451 - 201,544,439 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101976	(Get FASTA)	NCBI Sequence Viewer
	NP_001402911	(Get FASTA)	NCBI Sequence Viewer
	XP_006230524	(Get FASTA)	NCBI Sequence Viewer
	XP_006230526	(Get FASTA)	NCBI Sequence Viewer
	XP_038939285	(Get FASTA)	NCBI Sequence Viewer
	XP_038939289	(Get FASTA)	NCBI Sequence Viewer
	XP_038939294	(Get FASTA)	NCBI Sequence Viewer
	XP_038939306	(Get FASTA)	NCBI Sequence Viewer
	XP_038939311	(Get FASTA)	NCBI Sequence Viewer
	XP_038939312	(Get FASTA)	NCBI Sequence Viewer
	XP_038939322	(Get FASTA)	NCBI Sequence Viewer
	XP_038939328	(Get FASTA)	NCBI Sequence Viewer
	XP_038939334	(Get FASTA)	NCBI Sequence Viewer
	XP_038939341	(Get FASTA)	NCBI Sequence Viewer
	XP_063124018	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11809	(Get FASTA)	NCBI Sequence Viewer
	EDM11810	(Get FASTA)	NCBI Sequence Viewer
	EDM11811	(Get FASTA)	NCBI Sequence Viewer
	EDM11812	(Get FASTA)	NCBI Sequence Viewer
	EDM11813	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021702
	ENSRNOP00000021702.5
	ENSRNOP00000082695
	ENSRNOP00000082695.1
	ENSRNOP00000085956
	ENSRNOP00000085956.1
	ENSRNOP00000107429
	ENSRNOP00000107429.1
	ENSRNOP00000108791.1

RefSeq Acc Id:	NP_001101976 ⟸ NM_001108506
- Peptide Label:	isoform 1
- UniProtKB:	D4A274 (UniProtKB/TrEMBL), A6HX79 (UniProtKB/TrEMBL), A0A8I5ZU01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRK SNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYV RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPS YLENATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHI PGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAA DLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNV SETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNG SSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPS CTSANGNGLQAMSGLVVPPM hide sequence

RefSeq Acc Id:	XP_006230526 ⟸ XM_006230464
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRK SNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYV RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCI KAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLS YKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGM PHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQ VGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANSPYGI VPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPSCTSANGNGL QAMSGLVVPPM hide sequence

RefSeq Acc Id:	XP_006230524 ⟸ XM_006230462
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQSGVGLARAHFEKQPPSNLRK SNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNEKTNNGIHYKLQLLYSNGVRTEQDLYV RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPS YLENATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHI PGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAA DLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNV SETSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNG SSANSPYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPPS CTSANGNGLQGSLLGAEDATVEKTNWPFCEVGGIFHFDELMLKKGTGKLCLGW hide sequence

Ensembl Acc Id:

ENSRNOP00000021702 ⟸ ENSRNOT00000021702

RefSeq Acc Id:	XP_038939334 ⟸ XM_039083406
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939289 ⟸ XM_039083361
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A4F0 (UniProtKB/TrEMBL), A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939341 ⟸ XM_039083413
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939328 ⟸ XM_039083400
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939322 ⟸ XM_039083394
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939311 ⟸ XM_039083383
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939312 ⟸ XM_039083384
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939294 ⟸ XM_039083366
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939285 ⟸ XM_039083357
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939306 ⟸ XM_039083378
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000085956 ⟸ ENSRNOT00000115779

Ensembl Acc Id:

ENSRNOP00000082695 ⟸ ENSRNOT00000107995

RefSeq Acc Id:	NP_001402911 ⟸ NM_001415982
- Peptide Label:	isoform 2
- UniProtKB:	A6HX78 (UniProtKB/TrEMBL), A0A8I5ZU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124018 ⟸ XM_063267948
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZU01 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108791 ⟸ ENSRNOT00000157206

Ensembl Acc Id:

ENSRNOP00000107429 ⟸ ENSRNOT00000162603

Protein Domains

IPT/TIG

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A274-F1-model_v2	AlphaFold	D4A274	1-596	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304956	AgrOrtholog
BioCyc Gene	G2FUF-57126	BioCyc
Ensembl Genes	ENSRNOG00000016102	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021702	ENTREZGENE
	ENSRNOT00000021702.7	UniProtKB/TrEMBL
	ENSRNOT00000107995	ENTREZGENE
	ENSRNOT00000107995.2	UniProtKB/TrEMBL
	ENSRNOT00000115779	ENTREZGENE
	ENSRNOT00000115779.2	UniProtKB/TrEMBL
	ENSRNOT00000157206.1	UniProtKB/TrEMBL
	ENSRNOT00000162603	ENTREZGENE
	ENSRNOT00000162603.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.4280	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	2.60.40.3180	UniProtKB/TrEMBL
InterPro	COE_DBD	UniProtKB/TrEMBL
	COE_DBD_sf	UniProtKB/TrEMBL
	COE_HLH	UniProtKB/TrEMBL
	COE_IPT	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_E-set	UniProtKB/TrEMBL
	IPT_TIG_rcpt	UniProtKB/TrEMBL
	Transcription_factor_COE	UniProtKB/TrEMBL
	Transcription_factor_COE_CS	UniProtKB/TrEMBL
KEGG Report	rno:361668	UniProtKB/TrEMBL
NCBI Gene	361668	ENTREZGENE
PANTHER	TF_COE	UniProtKB/TrEMBL
Pfam	COE1_DBD	UniProtKB/TrEMBL
	COE1_HLH	UniProtKB/TrEMBL
	TIG	UniProtKB/TrEMBL
PhenoGen	Ebf3	PhenoGen
PROSITE	COE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016102	RatGTEx
SMART	IPT	UniProtKB/TrEMBL
Superfamily-SCOP	Ig_E-set	UniProtKB/TrEMBL
UniProt	A0A8I5ZU01	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4F0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LDH6_RAT	UniProtKB/TrEMBL
	A0ABK0LXZ6_RAT	UniProtKB/TrEMBL
	A6HX78	ENTREZGENE, UniProtKB/TrEMBL
	A6HX79	ENTREZGENE, UniProtKB/TrEMBL
	D4A274	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-10-03	Ebf3	EBF transcription factor 3	Ebf3	early B-cell factor 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ebf3	early B-cell factor 3	Ebf3_predicted	early B-cell factor 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ebf3_predicted	early B-cell factor 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM