Fam135a (family with sequence similarity 135, member A) - Rat Genome Database

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Gene: Fam135a (family with sequence similarity 135, member A) Rattus norvegicus
Analyze
Symbol: Fam135a
Name: family with sequence similarity 135, member A
RGD ID: 1304927
Description: Predicted to be involved in lipid metabolic process. Orthologous to human FAM135A (family with sequence similarity 135 member A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC367235; LOC367235; RGD1304927; similar to KIAA1411 protein; uncharacterized protein LOC367235
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8933,916,449 - 33,997,140 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl933,916,449 - 33,997,051 (-)EnsemblGRCr8
mRatBN7.2926,420,116 - 26,500,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl926,420,528 - 26,500,717 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx934,929,897 - 35,010,501 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0940,048,187 - 40,129,008 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0938,357,942 - 38,438,542 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0930,255,057 - 30,335,775 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl930,255,459 - 30,321,323 (-)Ensemblrn6Rnor6.0
Rnor_5.0929,080,102 - 29,160,296 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4922,725,545 - 22,803,942 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera923,957,983 - 24,035,906 (-)NCBICelera
RGSC_v3.1922,726,956 - 22,793,720 (-)NCBI
Cytogenetic Map9q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Fam135a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8933,916,449 - 33,997,140 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl933,916,449 - 33,997,051 (-)EnsemblGRCr8
mRatBN7.2926,420,116 - 26,500,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl926,420,528 - 26,500,717 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx934,929,897 - 35,010,501 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0940,048,187 - 40,129,008 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0938,357,942 - 38,438,542 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0930,255,057 - 30,335,775 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl930,255,459 - 30,321,323 (-)Ensemblrn6Rnor6.0
Rnor_5.0929,080,102 - 29,160,296 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4922,725,545 - 22,803,942 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera923,957,983 - 24,035,906 (-)NCBICelera
RGSC_v3.1922,726,956 - 22,793,720 (-)NCBI
Cytogenetic Map9q13NCBI
FAM135A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38670,413,508 - 70,561,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl670,412,941 - 70,561,608 (+)Ensemblhg38GRCh38
GRCh37671,123,211 - 71,270,877 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36671,179,828 - 71,327,596 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34671,179,989 - 71,327,448NCBI
Celera671,511,530 - 71,659,293 (+)NCBICelera
Cytogenetic Map6q13NCBI
HuRef668,321,422 - 68,469,035 (+)NCBIHuRef
CHM1_1671,289,438 - 71,437,228 (+)NCBICHM1_1
T2T-CHM13v2.0671,594,068 - 71,741,718 (+)NCBIT2T-CHM13v2.0
Fam135a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39124,049,824 - 24,139,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl124,050,174 - 24,139,422 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38124,010,758 - 24,100,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl124,011,093 - 24,100,341 (-)Ensemblmm10GRCm38
MGSCv37124,017,597 - 24,107,180 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36123,965,956 - 24,040,849 (-)NCBIMGSCv36mm8
Celera123,846,980 - 23,937,932 (-)NCBICelera
Cytogenetic Map1A5NCBI
cM Map19.87NCBI
Fam135a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554885,529,505 - 5,617,396 (+)Ensembl
ChiLan1.0NW_0049554885,529,579 - 5,616,188 (+)NCBIChiLan1.0ChiLan1.0
FAM135A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2590,401,510 - 90,549,142 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1688,326,711 - 88,474,504 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0668,248,800 - 68,396,398 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1671,546,924 - 71,694,411 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl671,546,924 - 71,694,408 (+)EnsemblpanPan2panpan1.1
FAM135A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11232,930,938 - 33,063,187 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1232,930,982 - 33,062,000 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1232,789,377 - 32,922,123 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01233,469,942 - 33,602,889 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1233,469,795 - 33,603,038 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11233,000,862 - 33,133,354 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01233,042,117 - 33,175,110 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01233,155,210 - 33,287,745 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam135a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494668,183,608 - 68,287,863 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366182,340,814 - 2,445,225 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366182,340,851 - 2,445,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM135A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl150,579,715 - 50,716,357 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1150,579,709 - 50,716,185 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2156,854,925 - 56,989,555 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM135A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1174,438,643 - 4,570,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl174,438,599 - 4,554,706 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605810,443,194 - 10,581,826 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam135a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248199,340,893 - 9,426,022 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248199,339,885 - 9,441,462 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam135a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14101,365,676 - 101,441,881 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam135a
603 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:50
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000018234
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat

Markers in Region
AI555249  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2926,420,782 - 26,420,985 (+)MAPPERmRatBN7.2
Rnor_6.0930,255,722 - 30,255,924NCBIRnor6.0
Rnor_5.0929,080,359 - 29,080,561UniSTSRnor5.0
RGSC_v3.4922,725,800 - 22,726,002UniSTSRGSC3.4
Celera923,958,238 - 23,958,440UniSTS
RH 3.4 Map9246.2UniSTS
Cytogenetic Map9q13UniSTS
RH129472  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2926,420,158 - 26,420,341 (+)MAPPERmRatBN7.2
Rnor_6.0930,255,098 - 30,255,280NCBIRnor6.0
Rnor_5.0929,079,735 - 29,079,917UniSTSRnor5.0
RGSC_v3.4922,725,176 - 22,725,358UniSTSRGSC3.4
Celera923,957,614 - 23,957,796UniSTS
RH 3.4 Map9247.2UniSTS
Cytogenetic Map9q13UniSTS
RH140684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2926,490,075 - 26,490,266 (+)MAPPERmRatBN7.2
Rnor_6.0930,325,018 - 30,325,208NCBIRnor6.0
Rnor_5.0929,149,655 - 29,149,845UniSTSRnor5.0
RGSC_v3.4922,794,984 - 22,795,174UniSTSRGSC3.4
Celera924,026,948 - 24,027,138UniSTS
RH 3.4 Map9246.7UniSTS
Cytogenetic Map9q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 78 59 6 342 178 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000018234   ⟹   ENSRNOP00000018234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,916,449 - 33,997,051 (-)Ensembl
mRatBN7.2 Ensembl926,420,528 - 26,499,034 (-)Ensembl
Rnor_6.0 Ensembl930,255,459 - 30,321,323 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111990   ⟹   ENSRNOP00000080690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl933,916,449 - 33,997,051 (-)Ensembl
mRatBN7.2 Ensembl926,421,226 - 26,500,717 (-)Ensembl
RefSeq Acc Id: NM_001134597   ⟹   NP_001128069
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,449 - 33,997,051 (-)NCBI
mRatBN7.2926,420,116 - 26,500,717 (-)NCBI
Rnor_6.0930,255,467 - 30,333,976 (-)NCBI
Rnor_5.0929,080,102 - 29,160,296 (-)NCBI
RGSC_v3.4922,725,545 - 22,803,942 (-)RGD
Celera923,957,983 - 24,035,906 (-)RGD
Sequence:
RefSeq Acc Id: NM_001393818   ⟹   NP_001380747
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,449 - 33,997,051 (-)NCBI
mRatBN7.2926,420,116 - 26,500,717 (-)NCBI
RefSeq Acc Id: XM_006244664   ⟹   XP_006244726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,033 (-)NCBI
mRatBN7.2926,420,116 - 26,500,697 (-)NCBI
Rnor_6.0930,255,057 - 30,335,775 (-)NCBI
Rnor_5.0929,080,102 - 29,160,296 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596553   ⟹   XP_017452042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,035 (-)NCBI
mRatBN7.2926,420,116 - 26,500,700 (-)NCBI
Rnor_6.0930,255,057 - 30,335,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596554   ⟹   XP_017452043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,035 (-)NCBI
mRatBN7.2926,420,116 - 26,500,700 (-)NCBI
Rnor_6.0930,255,057 - 30,335,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596555   ⟹   XP_017452044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,996,866 (-)NCBI
mRatBN7.2926,420,116 - 26,500,416 (-)NCBI
Rnor_6.0930,255,465 - 30,335,170 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596556   ⟹   XP_017452045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,996,868 (-)NCBI
mRatBN7.2926,420,116 - 26,500,416 (-)NCBI
Rnor_6.0930,255,465 - 30,335,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596557   ⟹   XP_017452046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,137 (-)NCBI
mRatBN7.2926,420,116 - 26,500,803 (-)NCBI
Rnor_6.0930,255,057 - 30,335,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596560   ⟹   XP_017452049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,035 (-)NCBI
mRatBN7.2926,420,116 - 26,500,700 (-)NCBI
Rnor_6.0930,255,057 - 30,335,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083959   ⟹   XP_038939887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,996,866 (-)NCBI
mRatBN7.2926,420,116 - 26,500,416 (-)NCBI
RefSeq Acc Id: XM_039083960   ⟹   XP_038939888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,996,866 (-)NCBI
mRatBN7.2926,420,116 - 26,500,416 (-)NCBI
RefSeq Acc Id: XM_039083961   ⟹   XP_038939889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,140 (-)NCBI
mRatBN7.2926,420,116 - 26,500,799 (-)NCBI
RefSeq Acc Id: XM_039083962   ⟹   XP_038939890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,961,929 (-)NCBI
mRatBN7.2926,420,116 - 26,465,597 (-)NCBI
RefSeq Acc Id: XM_039083963   ⟹   XP_038939891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,961,925 (-)NCBI
mRatBN7.2926,420,116 - 26,465,597 (-)NCBI
RefSeq Acc Id: XM_039083964   ⟹   XP_038939892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,951,266 (-)NCBI
mRatBN7.2926,420,116 - 26,454,961 (-)NCBI
RefSeq Acc Id: XM_039083965   ⟹   XP_038939893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,952,637 (-)NCBI
mRatBN7.2926,420,116 - 26,456,305 (-)NCBI
RefSeq Acc Id: XM_039083966   ⟹   XP_038939894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,951,252 (-)NCBI
mRatBN7.2926,420,116 - 26,454,955 (-)NCBI
RefSeq Acc Id: XM_063267499   ⟹   XP_063123569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,033 (-)NCBI
RefSeq Acc Id: XM_063267500   ⟹   XP_063123570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,033 (-)NCBI
RefSeq Acc Id: XM_063267501   ⟹   XP_063123571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,140 (-)NCBI
RefSeq Acc Id: XM_063267502   ⟹   XP_063123572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8933,916,856 - 33,997,035 (-)NCBI
RefSeq Acc Id: NP_001128069   ⟸   NM_001134597
- Peptide Label: isoform 2
- UniProtKB: D3ZVB3 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244726   ⟸   XM_006244664
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452046   ⟸   XM_017596557
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452049   ⟸   XM_017596560
- Peptide Label: isoform X4
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452042   ⟸   XM_017596553
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452043   ⟸   XM_017596554
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452045   ⟸   XM_017596556
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452044   ⟸   XM_017596555
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018234   ⟸   ENSRNOT00000018234
RefSeq Acc Id: XP_038939889   ⟸   XM_039083961
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939888   ⟸   XM_039083960
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939887   ⟸   XM_039083959
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQV8 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939891   ⟸   XM_039083963
- Peptide Label: isoform X6
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939890   ⟸   XM_039083962
- Peptide Label: isoform X5
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939893   ⟸   XM_039083965
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038939892   ⟸   XM_039083964
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038939894   ⟸   XM_039083966
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000080690   ⟸   ENSRNOT00000111990
RefSeq Acc Id: NP_001380747   ⟸   NM_001393818
- Peptide Label: isoform 1
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123571   ⟸   XM_063267501
- Peptide Label: isoform X3
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123572   ⟸   XM_063267502
- Peptide Label: isoform X4
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123569   ⟸   XM_063267499
- Peptide Label: isoform X2
- UniProtKB: D3ZVB3 (UniProtKB/TrEMBL),   A6JJB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123570   ⟸   XM_063267500
- Peptide Label: isoform X3
- UniProtKB: A6JJB5 (UniProtKB/TrEMBL)
Protein Domains
DUF676

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVB3-F1-model_v2 AlphaFold D3ZVB3 1-1344 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304927 AgrOrtholog
BioCyc Gene G2FUF-27964 BioCyc
Ensembl Genes ENSRNOG00000013587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018234 ENTREZGENE
  ENSRNOT00000018234.9 UniProtKB/TrEMBL
  ENSRNOT00000111990 ENTREZGENE
  ENSRNOT00000111990.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  DUF3657 UniProtKB/TrEMBL
  DUF676_hydro-like UniProtKB/TrEMBL
  Lipase-like UniProtKB/TrEMBL
KEGG Report rno:367235 UniProtKB/TrEMBL
NCBI Gene 367235 ENTREZGENE
PANTHER PROTEIN FAM135A UniProtKB/TrEMBL
  PTHR12482 UniProtKB/TrEMBL
Pfam DUF3657 UniProtKB/TrEMBL
  DUF676 UniProtKB/TrEMBL
PhenoGen Fam135a PhenoGen
RatGTEx ENSRNOG00000013587 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8I5ZQV8 ENTREZGENE, UniProtKB/TrEMBL
  A6JJB5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVB3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-16 Fam135a  family with sequence similarity 135, member A  RGD1304927  similar to KIAA1411 protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1304927  similar to KIAA1411 protein   RGD1304927_predicted  similar to KIAA1411 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1304927_predicted  similar to KIAA1411 protein (predicted)  LOC367235_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC367235_predicted  similar to KIAA1411 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL