Asf1b (anti-silencing function 1B histone chaperone) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Asf1b (anti-silencing function 1B histone chaperone) Rattus norvegicus
Analyze
Symbol: Asf1b
Name: anti-silencing function 1B histone chaperone
RGD ID: 1304918
Description: Predicted to enable histone binding activity and histone chaperone activity. Predicted to be involved in DNA replication-dependent chromatin assembly. Predicted to act upstream of or within blastocyst hatching and nucleosome assembly. Predicted to be located in nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in chromatin and nucleus. Orthologous to human ASF1B (anti-silencing function 1B histone chaperone); PARTICIPATES IN histone modification pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ASF1 anti-silencing function 1 homolog B; ASF1 anti-silencing function 1 homolog B (S. cerevisiae); histone chaperone ASF1B; LOC304648
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,085,786 - 41,100,352 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1941,086,114 - 41,100,352 (-)EnsemblGRCr8
mRatBN7.21924,181,024 - 24,195,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,181,028 - 24,195,549 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1931,002,160 - 31,016,725 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,656,566 - 31,671,131 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,879,281 - 33,893,844 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,077,918 - 25,092,491 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,077,918 - 25,092,491 (+)Ensemblrn6Rnor6.0
Rnor_5.01936,055,967 - 36,070,506 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41925,867,384 - 25,881,909 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1923,729,321 - 23,743,692 (-)NCBICelera
RGSC_v3.11925,872,530 - 25,887,149 (-)NCBI
Cytogenetic Map19q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deguelin  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
diethyl malate  (ISO)
diethyl maleate  (EXP)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
flusilazole  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
GSK-J4  (ISO)
hexaconazole  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
niclosamide  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
propanal  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)
protein-containing complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Histone chaperones in nucleosome assembly and human disease. Burgess RJ and Zhang Z, Nat Struct Mol Biol. 2013 Jan;20(1):14-22. doi: 10.1038/nsmb.2461.
2. Asf1b, the necessary Asf1 isoform for proliferation, is predictive of outcome in breast cancer. Corpet A, etal., EMBO J. 2011 Feb 2;30(3):480-93. doi: 10.1038/emboj.2010.335. Epub 2010 Dec 21.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12842904   PMID:14718166   PMID:27869233  


Genomics

Comparative Map Data
Asf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,085,786 - 41,100,352 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1941,086,114 - 41,100,352 (-)EnsemblGRCr8
mRatBN7.21924,181,024 - 24,195,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,181,028 - 24,195,549 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1931,002,160 - 31,016,725 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,656,566 - 31,671,131 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,879,281 - 33,893,844 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,077,918 - 25,092,491 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,077,918 - 25,092,491 (+)Ensemblrn6Rnor6.0
Rnor_5.01936,055,967 - 36,070,506 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41925,867,384 - 25,881,909 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1923,729,321 - 23,743,692 (-)NCBICelera
RGSC_v3.11925,872,530 - 25,887,149 (-)NCBI
Cytogenetic Map19q11NCBI
ASF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,119,512 - 14,136,589 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,119,512 - 14,136,622 (-)Ensemblhg38GRCh38
GRCh371914,230,324 - 14,247,401 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,091,321 - 14,108,440 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341914,091,342 - 14,108,429NCBI
Celera1914,124,596 - 14,141,712 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1913,801,888 - 13,818,881 (-)NCBIHuRef
CHM1_11914,230,740 - 14,247,871 (-)NCBICHM1_1
T2T-CHM13v2.01914,246,124 - 14,263,201 (-)NCBIT2T-CHM13v2.0
Asf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,682,323 - 84,696,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,682,136 - 84,696,826 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38883,955,694 - 83,970,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,955,507 - 83,970,197 (+)Ensemblmm10GRCm38
MGSCv37886,479,593 - 86,494,094 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36886,845,799 - 86,860,300 (+)NCBIMGSCv36mm8
Celera888,249,392 - 88,263,700 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.22NCBI
Asf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,817,547 - 32,828,651 (-)Ensembl
ChiLan1.0NW_00495541532,818,592 - 32,828,651 (-)NCBIChiLan1.0ChiLan1.0
ASF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,051,940 - 19,069,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,053,309 - 18,071,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,685,617 - 13,702,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,411,127 - 14,428,508 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,411,127 - 14,428,917 (-)EnsemblpanPan2panpan1.1
ASF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,398,615 - 48,406,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,272,803 - 48,281,403 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02048,916,074 - 48,924,671 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,924,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,127,279 - 48,135,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,553,848 - 48,562,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,796,639 - 48,805,239 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Asf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,571,966 - 207,582,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,770,900 - 2,782,748 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,772,310 - 2,782,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,062,766 - 65,072,679 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1265,063,186 - 65,072,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,338,722 - 65,348,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,760,865 - 12,773,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660746,870,179 - 6,886,353 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,342,765 - 1,354,165 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249011,342,855 - 1,354,196 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Asf1b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11716,313,559 - 16,328,119 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Asf1b
148 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:83
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000006964
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)19574806450748064Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)193128753251431640Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)193009938347207961Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 162 90 89 58 92 58 6 351 191 11 141 78 92 31 16 16

Sequence


Ensembl Acc Id: ENSRNOT00000006964   ⟹   ENSRNOP00000006964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1941,086,114 - 41,100,352 (-)Ensembl
mRatBN7.2 Ensembl1924,181,028 - 24,195,541 (-)Ensembl
Rnor_6.0 Ensembl1925,077,918 - 25,092,491 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115185   ⟹   ENSRNOP00000082301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1924,181,028 - 24,195,549 (-)Ensembl
RefSeq Acc Id: NM_001107160   ⟹   NP_001100630
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81941,085,788 - 41,100,352 (-)NCBI
mRatBN7.21924,181,028 - 24,195,594 (-)NCBI
Rnor_6.01925,077,918 - 25,092,491 (+)NCBI
Rnor_5.01936,055,967 - 36,070,506 (+)NCBI
RGSC_v3.41925,867,384 - 25,881,909 (-)RGD
Celera1923,729,321 - 23,743,692 (-)RGD
Sequence:
RefSeq Acc Id: XM_039097681   ⟹   XP_038953609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81941,085,786 - 41,100,202 (-)NCBI
mRatBN7.21924,181,024 - 24,195,594 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100630 (Get FASTA)   NCBI Sequence Viewer  
  XP_038953609 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58706 (Get FASTA)   NCBI Sequence Viewer  
  EDL92252 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006964
  ENSRNOP00000006964.6
RefSeq Acc Id: NP_001100630   ⟸   NM_001107160
- UniProtKB: B0BN69 (UniProtKB/TrEMBL),   A6IYC4 (UniProtKB/TrEMBL),   F7EWU6 (UniProtKB/TrEMBL),   A0A8I5ZUP3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006964   ⟸   ENSRNOT00000006964
RefSeq Acc Id: XP_038953609   ⟸   XM_039097681
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000082301   ⟸   ENSRNOT00000115185

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN69-F1-model_v2 AlphaFold B0BN69 1-202 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701006
Promoter ID:EPDNEW_R11530
Type:initiation region
Name:Asf1b_1
Description:anti-silencing function 1B histone chaperone
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01925,077,971 - 25,078,031EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304918 AgrOrtholog
BioCyc Gene G2FUF-6035 BioCyc
Ensembl Genes ENSRNOG00000005115 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006964 ENTREZGENE
  ENSRNOT00000006964.7 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1490 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9030040 IMAGE-MGC_LOAD
InterPro ASF1-like_sf UniProtKB/TrEMBL
  Histone_chaperone_ASF1-like UniProtKB/TrEMBL
KEGG Report rno:304648 UniProtKB/TrEMBL
MGC_CLONE MGC:187795 IMAGE-MGC_LOAD
NCBI Gene 304648 ENTREZGENE
PANTHER Anti-silence UniProtKB/TrEMBL
  HISTONE CHAPERONE ASF1B UniProtKB/TrEMBL
Pfam ASF1_hist_chap UniProtKB/TrEMBL
PhenoGen Asf1b PhenoGen
RatGTEx ENSRNOG00000005115 RatGTEx
Superfamily-SCOP Anti-silence UniProtKB/TrEMBL
UniProt A0A8I5ZUP3 ENTREZGENE, UniProtKB/TrEMBL
  A6IYC4 ENTREZGENE, UniProtKB/TrEMBL
  B0BN69 ENTREZGENE
  F7EWU6 ENTREZGENE
UniProt Secondary B0BN69 UniProtKB/TrEMBL
  F7EWU6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-12 Asf1b  anti-silencing function 1B histone chaperone  Asf1b  ASF1 anti-silencing function 1 homolog B (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Asf1b  ASF1 anti-silencing function 1 homolog B (S. cerevisiae)   Asf1b_predicted  ASF1 anti-silencing function 1 homolog B (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Asf1b_predicted  ASF1 anti-silencing function 1 homolog B (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED