Adgra3 (adhesion G protein-coupled receptor A3) - Rat Genome Database

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Gene: Adgra3 (adhesion G protein-coupled receptor A3) Rattus norvegicus
Analyze
Symbol: Adgra3
Name: adhesion G protein-coupled receptor A3
RGD ID: 1304914
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in external side of plasma membrane. Orthologous to human ADGRA3 (adhesion G protein-coupled receptor A3); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G protein-coupled receptor 125; Gpr125; LOC305408; probable G-protein coupled receptor 125
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81465,085,418 - 65,188,949 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1465,087,380 - 65,188,959 (+)EnsemblGRCr8
mRatBN7.21460,874,719 - 60,976,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1460,874,715 - 60,976,332 (+)EnsemblmRatBN7.2
Rnor_6.01464,686,677 - 64,786,813 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1464,686,793 - 64,786,497 (+)Ensemblrn6Rnor6.0
Rnor_5.01464,778,448 - 64,878,576 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41465,770,256 - 65,778,671 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1459,953,004 - 60,048,910 (+)NCBICelera
RGSC_v3.11465,772,017 - 65,875,273 (+)NCBI
Cytogenetic Map14q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17882221  


Genomics

Comparative Map Data
Adgra3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81465,085,418 - 65,188,949 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1465,087,380 - 65,188,959 (+)EnsemblGRCr8
mRatBN7.21460,874,719 - 60,976,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1460,874,715 - 60,976,332 (+)EnsemblmRatBN7.2
Rnor_6.01464,686,677 - 64,786,813 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1464,686,793 - 64,786,497 (+)Ensemblrn6Rnor6.0
Rnor_5.01464,778,448 - 64,878,576 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41465,770,256 - 65,778,671 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1459,953,004 - 60,048,910 (+)NCBICelera
RGSC_v3.11465,772,017 - 65,875,273 (+)NCBI
Cytogenetic Map14q11NCBI
ADGRA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38422,387,376 - 22,516,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl422,345,071 - 22,516,089 (-)Ensemblhg38GRCh38
GRCh37422,388,999 - 22,517,689 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36421,998,097 - 22,126,770 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34422,065,267 - 22,193,941NCBI
Celera422,839,590 - 22,967,882 (-)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef421,733,690 - 21,862,148 (-)NCBIHuRef
CHM1_1422,387,160 - 22,515,695 (-)NCBICHM1_1
T2T-CHM13v2.0422,369,218 - 22,497,870 (-)NCBIT2T-CHM13v2.0
Adgra3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39550,117,293 - 50,216,338 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl550,117,298 - 50,216,348 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38549,959,951 - 50,058,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl549,959,956 - 50,059,006 (-)Ensemblmm10GRCm38
MGSCv37550,351,190 - 50,450,235 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36550,248,199 - 50,349,457 (-)NCBIMGSCv36mm8
Celera547,351,571 - 47,450,370 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map526.85NCBI
Adgra3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554802,322,783 - 2,412,334 (+)Ensembl
ChiLan1.0NW_0049554802,322,783 - 2,408,241 (+)NCBIChiLan1.0ChiLan1.0
ADGRA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2322,642,660 - 22,770,788 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1422,839,293 - 22,967,556 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0416,796,139 - 16,924,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1422,087,916 - 22,215,699 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl422,088,243 - 22,215,929 (-)EnsemblpanPan2panpan1.1
ADGRA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1387,320,113 - 87,435,351 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl387,321,872 - 87,435,312 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha389,830,641 - 89,953,215 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0388,296,330 - 88,417,367 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl388,296,050 - 88,417,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1387,445,836 - 87,568,635 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0387,532,942 - 87,652,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0387,910,100 - 88,031,380 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Adgra3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528552,829,808 - 52,935,931 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364776,531,501 - 6,638,135 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364776,531,506 - 6,637,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl816,666,606 - 16,787,296 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1816,666,409 - 16,787,958 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2816,905,380 - 16,910,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADGRA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12727,786,029 - 27,915,242 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2727,856,636 - 27,915,378 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604774,349,494 - 74,478,695 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adgra3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247559,661,249 - 9,800,057 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247559,661,228 - 9,800,379 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Adgra3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11155,970,590 - 56,064,373 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Adgra3
455 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:171
Interacting mature miRNAs:202
Transcripts:ENSRNOT00000005894, ENSRNOT00000036646
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142252151767521517Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH134656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21460,958,445 - 60,958,625 (+)MAPPERmRatBN7.2
Rnor_6.01464,768,875 - 64,769,054NCBIRnor6.0
Rnor_5.01464,860,638 - 64,860,817UniSTSRnor5.0
RGSC_v3.41465,854,385 - 65,854,564UniSTSRGSC3.4
RH 3.4 Map14483.48UniSTS
Cytogenetic Map14q11UniSTS
RH140456  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21460,975,872 - 60,976,054 (+)MAPPERmRatBN7.2
Rnor_6.01464,786,348 - 64,786,529NCBIRnor6.0
Rnor_5.01464,878,111 - 64,878,292UniSTSRnor5.0
RGSC_v3.41465,872,418 - 65,872,599UniSTSRGSC3.4
Celera1460,048,445 - 60,048,626UniSTS
RH 3.4 Map14481.18UniSTS
Cytogenetic Map14q11UniSTS
AU049732  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21460,930,219 - 60,930,394 (+)MAPPERmRatBN7.2
Rnor_6.01464,994,029 - 64,994,203NCBIRnor6.0
Rnor_5.01465,083,384 - 65,083,558UniSTSRnor5.0
RGSC_v3.41465,825,557 - 65,825,731UniSTSRGSC3.4
Celera1460,008,105 - 60,008,279UniSTS
Cytogenetic Map14q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 85 59 6 349 185 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005894   ⟹   ENSRNOP00000005894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1464,686,793 - 64,739,694 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000036646   ⟹   ENSRNOP00000037291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1465,087,380 - 65,188,959 (+)Ensembl
mRatBN7.2 Ensembl1460,874,715 - 60,976,332 (+)Ensembl
Rnor_6.0 Ensembl1464,686,910 - 64,786,497 (+)Ensembl
RefSeq Acc Id: XM_039092758   ⟹   XP_038948686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81465,085,418 - 65,188,949 (+)NCBI
mRatBN7.21460,874,719 - 60,976,263 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001419740 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948686 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99906 (Get FASTA)   NCBI Sequence Viewer  
  EDL99907 (Get FASTA)   NCBI Sequence Viewer  
  EDL99908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037291
  ENSRNOP00000037291.7
Ensembl Acc Id: ENSRNOP00000037291   ⟸   ENSRNOT00000036646
Ensembl Acc Id: ENSRNOP00000005894   ⟸   ENSRNOT00000005894
RefSeq Acc Id: XP_038948686   ⟸   XM_039092758
Protein Domains
G-protein coupled receptors family 2 profile   GAIN-B   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JSU2-F1-model_v2 AlphaFold A0A0G2JSU2 1-1306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699344
Promoter ID:EPDNEW_R9868
Type:initiation region
Name:Adgra3_1
Description:adhesion G protein-coupled receptor A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01464,686,698 - 64,686,758EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304914 AgrOrtholog
BioCyc Gene G2FUF-15575 BioCyc
Ensembl Genes ENSRNOG00000004279 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036646 ENTREZGENE
  ENSRNOT00000036646.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.220.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  4.10.1240.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Adhesion_GPCR_A UniProtKB/TrEMBL
  Cys-rich_flank_reg_C UniProtKB/TrEMBL
  GAIN_B UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS_dom UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
NCBI Gene 305408 ENTREZGENE
PANTHER ADHESION G PROTEIN-COUPLED RECEPTOR A3 UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Adgra3 PhenoGen
PROSITE G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004279 RatGTEx
SMART GPS UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF111418 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2JSU2 ENTREZGENE, UniProtKB/TrEMBL
  A6IJJ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-16 Adgra3  adhesion G protein-coupled receptor A3  Gpr125  G protein-coupled receptor 125  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Gpr125  G protein-coupled receptor 125   Gpr125_predicted  G protein-coupled receptor 125 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gpr125_predicted  G protein-coupled receptor 125 (predicted)      Symbol and Name status set to approved 70820 APPROVED