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Gene: Myt1 (myelin transcription factor 1) Rattus norvegicus

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Symbol:

Myt1

Name:

myelin transcription factor 1

RGD ID:

1304899

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including diaphragm development; regulation of gene expression; and regulation of insulin secretion involved in cellular response to glucose stimulus. Predicted to be active in nucleus. Orthologous to human MYT1 (myelin transcription factor 1); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362291

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYT1 (myelin transcription factor 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Myt1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myt1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MYT1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MYT1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myt1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYT1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYT1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myt1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Myt1 (myelin transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SCGB3A2 (secretoglobin family 3A member 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MYT1 (myelin transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MYT1 (myelin transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Myt1 (myelin transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	myt1a (myelin transcription factor 1a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	myt1b (myelin transcription factor 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	myt1b (myelin transcription factor 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG43689	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG43689	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	ztf-11	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	myt1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	myt1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	189,263,569 - 189,327,844 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	189,263,467 - 189,327,844 (+)	Ensembl				GRCr8
mRatBN7.2	3	168,890,466 - 168,950,341 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,886,089 - 168,950,341 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	173,296,066 - 173,326,848 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	182,255,163 - 182,285,949 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,920,491 - 178,951,261 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	177,281,365 - 177,341,550 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	177,310,753 - 177,341,547 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,989,537 - 181,049,955 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,954,769 - 170,985,583 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	163,640,239 - 163,671,029 (-)	NCBI		Celera
RGSC_v3.1	3	170,827,281 - 170,891,617 (+)	NCBI
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

genetic disease (ISO)

hereditary spastic paraplegia (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-colchicine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-butan-2-yl-4-[4-[4-[4-[[2-(2,4-dichlorophenyl)-2-(1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy]phenyl]-1-piperazinyl]phenyl]-1,2,4-triazol-3-one (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

CGP 52608 (ISO)

copper atom (EXP)

copper(0) (EXP)

cryptolepine (ISO)

Cuprizon (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

etoposide (ISO)

folic acid (ISO)

heptanal (ISO)

hexanal (ISO)

itraconazole (ISO)

ketoconazole (ISO)

lead(0) (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

N-ethyl-N-nitrosourea (ISO)

naphthalene (ISO)

nocodazole (ISO)

nonanal (ISO)

octanal (ISO)

ozone (ISO)

PCB138 (ISO)

pentanal (ISO)

permethrin (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (EXP)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

diaphragm development (ISO)

DNA-templated transcription (IEA)

endocrine pancreas development (ISO)

intracellular glucose homeostasis (ISO)

negative regulation of gene expression (ISO)

positive regulation of gene expression (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

post-embryonic development (ISO)

regulation of DNA-templated transcription (IEA)

regulation of hormone metabolic process (ISO)

regulation of insulin secretion involved in cellular response to glucose stimulus (ISO)

regulation of transcription by RNA polymerase II (IBA,IEA)

Cellular Component

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

cis-regulatory region sequence-specific DNA binding (ISO)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9373037	PMID:17442045	PMID:17928203	PMID:26071990	PMID:28303373

Genomics

Comparative Map Data

Myt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	189,263,569 - 189,327,844 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	189,263,467 - 189,327,844 (+)	Ensembl				GRCr8
mRatBN7.2	3	168,890,466 - 168,950,341 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,886,089 - 168,950,341 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	173,296,066 - 173,326,848 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	182,255,163 - 182,285,949 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,920,491 - 178,951,261 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	177,281,365 - 177,341,550 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	177,310,753 - 177,341,547 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,989,537 - 181,049,955 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,954,769 - 170,985,583 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	163,640,239 - 163,671,029 (-)	NCBI		Celera
RGSC_v3.1	3	170,827,281 - 170,891,617 (+)	NCBI
Cytogenetic Map	3	q43	NCBI

MYT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	64,164,452 - 64,242,253 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	64,102,222 - 64,242,253 (+)	Ensembl			hg38	GRCh38
GRCh37	20	62,795,805 - 62,873,606 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	62,266,271 - 62,344,050 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	62,266,270 - 62,344,048	NCBI
Celera	20	59,480,507 - 59,558,438 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	59,521,605 - 59,598,530 (+)	NCBI		HuRef
CHM1_1	20	62,696,840 - 62,774,541 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,983,955 - 66,063,029 (+)	NCBI		T2T-CHM13v2.0

Myt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	181,405,099 - 181,469,579 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	181,405,125 - 181,469,590 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	181,763,332 - 181,827,775 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,763,332 - 181,827,797 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	181,498,037 - 181,562,480 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,696,448 - 181,757,174 (+)	NCBI		MGSCv36	mm8
Celera	2	185,838,883 - 185,903,600 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.77	NCBI

Myt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	47,800 - 112,114 (-)	Ensembl
ChiLan1.0	NW_004955528	48,198 - 108,293 (-)	NCBI	ChiLan1.0	ChiLan1.0

MYT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,986,961 - 70,067,209 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,978,970 - 70,059,221 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	62,081,231 - 62,153,741 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	62,108,924 - 62,151,936 (+)	Ensembl			panPan2	panpan1.1

MYT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	47,574,201 - 47,639,962 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	47,574,255 - 47,638,315 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,711,804 - 46,773,586 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	48,717,427 - 48,779,220 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	48,713,529 - 48,779,222 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	47,562,006 - 47,623,774 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,686,311 - 47,748,092 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,425,706 - 48,487,543 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Myt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,852,513 - 195,914,291 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	11,308,071 - 11,368,801 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	11,305,929 - 11,367,935 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,979,350 - 63,014,696 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	62,955,052 - 63,020,652 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MYT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	59,574 - 96,113 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	61,371 - 96,583 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	47,439,664 - 47,531,211 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	29,775,504 - 29,837,606 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	29,779,177 - 29,837,606 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Myt1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	28,398 - 72,143 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	592
Count of miRNA genes:	269
Interacting mature miRNAs:	358
Transcripts:	ENSRNOT00000031448
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	181611379	189428310	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat

Markers in Region

D3Mco37

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	189,299,406 - 189,299,613 (+)	Marker Load Pipeline
Rnor_6.0	3	177,313,106 - 177,313,308	NCBI	Rnor6.0
Rnor_5.0	3	181,021,494 - 181,021,696	UniSTS	Rnor5.0
RGSC_v3.4	3	170,957,122 - 170,957,324	UniSTS	RGSC3.4
Celera	3	163,668,458 - 163,668,676	UniSTS
Cytogenetic Map	3	q43	UniSTS

RH10656

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,950,085 - 168,950,262 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	177,341,292 - 177,341,468	NCBI	Rnor6.0
Rnor_5.0	3	181,049,697 - 181,049,873	UniSTS	Rnor5.0
RGSC_v3.4	3	170,985,328 - 170,985,504	UniSTS	RGSC3.4
Celera	3	163,640,318 - 163,640,494	UniSTS
Cytogenetic Map	3	q43	UniSTS

UniSTS:258472

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,919,017 - 168,919,123 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	177,310,220 - 177,310,325	NCBI	Rnor6.0
Rnor_5.0	3	181,018,608 - 181,018,713	UniSTS	Rnor5.0
RGSC_v3.4	3	170,954,236 - 170,954,341	UniSTS	RGSC3.4
Celera	3	163,671,457 - 163,671,562	UniSTS
Cytogenetic Map	3	q43	UniSTS

PMC304100P8

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,948,746 - 168,948,946 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	177,339,953 - 177,340,152	NCBI	Rnor6.0
Rnor_5.0	3	181,048,358 - 181,048,557	UniSTS	Rnor5.0
RGSC_v3.4	3	170,983,989 - 170,984,188	UniSTS	RGSC3.4
Celera	3	163,641,634 - 163,641,833	UniSTS
Cytogenetic Map	3	q43	UniSTS

UniSTS:546878

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,923,779 - 168,924,893 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	177,314,974 - 177,316,087	NCBI	Rnor6.0
Rnor_5.0	3	181,023,362 - 181,024,475	UniSTS	Rnor5.0
Celera	3	163,665,679 - 163,666,792	UniSTS
Cytogenetic Map	3	q43	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	1	15	145	54	51	26	22	26	6	126	59	2	131	24	60	25	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031448 ⟹ ENSRNOP00000032420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,290,306 - 189,327,844 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,919,551 - 168,950,341 (+)	Ensembl
Rnor_6.0 Ensembl	3	177,310,753 - 177,341,547 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094940 ⟹ ENSRNOP00000080274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,290,306 - 189,327,844 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,912,803 - 168,950,341 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096392 ⟹ ENSRNOP00000078394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,263,467 - 189,327,844 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,912,803 - 168,950,341 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102710 ⟹ ENSRNOP00000087460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,263,490 - 189,327,844 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,886,089 - 168,950,341 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172969 ⟹ ENSRNOP00000100471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	189,267,665 - 189,327,844 (+)	Ensembl

RefSeq Acc Id:

NM_001108615 ⟹ NP_001102085

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,297,054 - 189,327,844 (+)	NCBI
mRatBN7.2	3	168,919,551 - 168,950,341 (+)	NCBI
Rnor_6.0	3	177,310,753 - 177,341,547 (+)	NCBI
Rnor_5.0	3	180,989,537 - 181,049,955 (+)	NCBI
RGSC_v3.4	3	170,954,769 - 170,985,583 (+)	RGD
Celera	3	163,640,239 - 163,671,029 (-)	RGD

Sequence:

show sequence

TTTGACCTCCTCCACATCTTTCTGGTTGAAATATCTCAGTTCAGGATGAATCAGGACTCTGAAG
GTGGGCTGCTCATAGAAGCCAGGAGAAGAAAGAAGGCATCTGAGAGTCCGCTGACCTCCCAACC
TTCTGGGATCAGCTGACTTTAAACGGTTGAGTTAGAGTTTTACCATATTTTTGAAGCAATCTAT
GTTGAGCCCTCACTGATTTCCTTCTTGGGATTCAAGTGAATGAATGGCCCATGGAATAAAGCAA
GTTTGTGTTCCATGTAGAAAAGGCCCACAACTCACCTGCCTCTTGGGATATTATATAGTAGGGC
TGGCTCCTACTGTTGCTAAGAACACTGGTTCACGAGTTCCACAGAACCAGCAGGTAGAAAGAAC
TGTTGCTATGTTTAAAAGATTTAAATTCATGTTCTTTCAAAATAGAAGTGGTTTTCAATTATGA
AATGACTTTTCATCTGTGTTTTTTTTCTTTAAGTTCCATTATATAAAATGCAGATCTATCTGAT
TTGAGAAAATAAATGATGGGGTAGTAATACGAAAAATATCAAAGTAATCTAGCTAAAATTGATT
CCCCCAAGGTTTGTGAATCAAAGCAGAAGGCTGACAGGGTGGCTCACACTTCATTTCCATGTTT
TCTGGGCTACAGTGTTGAGGGTGAGCAGGGTGGGGCCAAGTAGAGGGTTGGCTACTGTTGGGGG
TAGAGACCTGGAAACATTCCTCTCTTGCTGTCTTCAAGGCCCTATGGTCTTTCTTGTTTTATGC
AGGAAAAAGCCTGATCAAGCCCCATTTTGGCTCCAACCCCACAAGCAGCCCTTCTGGCTTCTCC
AAGGGCAGCTACAGTAGCTATCAGGGCATCATTGCAACTTCCCTCCTAAATCTGGGCCAAATTG
CTGAAGAGACCCTTGTGCAGGAGGATTCAGTCTCAGTAGCTAAGTTGGGCCCCACTGTTGTTCA
CCAGCTTCAGGATGAGGCTGCAATGGTGGCCAACAGTGATGAGGGTGAAAAGGACCTCTTTATA
CAGCCAGAAGATGTGGAGGAGGTCATTGAAGTCACCAGTGAACGCTCCCAGGAGCCATGCCCTC
AGTCTCTGAAGGATATGGTTAATGAAGAGTCAAGCAAACAGAAAGGTGTCCTAGGTCATGAGGA
GGAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGAAGAAGAGGAGGGAGAGGAAGGAGAGGAGGAA
GAGGAAGAGGAGGAGGAAGAAGATGAAGAAGATGAGGAGGAAGATGAGGAGGAGGAGGAGGAGG
AGGAGGAAGCAGCTTCAAATGTCCTCTTTGGGGACGACACCACTCATACCTCTGTCCAGAAGGC
TTCTTCTGAGTTCCGAGGCCCAGAGCTATCCAGTCCTAAACCTGAGTACTCAGTCATCGTGGAG
GTCCGTTCTGATGACGACAAGGATGAGGATTCACACTCCCAGAAGTCAGCAGTCACAGATGAAT
CAGAAATGTATGACATGATGACCCGTGGGAATCTGGGCCTTTTGGAGCAGGCCATTGCCCTAAA
GGCTGAGCAGGTGCGAGCGGTCTGTGAGTCTGGCTGCCCACCTGCTGAGCAGGGCCATCTGGGC
CCAGGAGAGCCAGGGAAAATGGCAAAGCCCTTGGATGTGGTGAGGAAGAGCTGCTACAACAAAG
ATCCTTCCAGGGTGGAGAAGCGTGAAATCAAGTGTCCGACACCTGGCTGTGATGGCACTGGCCA
TGTTACTGGGTTGTACCCTCATCACCGCAGCCTGTCTGGCTGTCCCCACAAGGATAGAATTCCT
CCAGAGATCTTGGCCATGCATGAAAATGTGCTGAAGTGCCCCACTCCCGGCTGCACGGGCCAAG
GCCATGTGAACAGCAACCGCAATACCCACAGAAGTTTGTCTGGATGTCCCATTGCTGCTGCTGA
AAAATTAGCCAAATCTCATGAGAAGCAGCAGTTGCAGACAGGAGATCCTCCCAAAAATAACTCC
AATTCAGATCGGATCCTCAGGCCCATGTGTTTTGTGAAGCAGCTCGAGGTTCCTCCTTATGGGA
GCTACCGACCCAATGTGGCTCCCACCACACCCAGGGCCAACTTGGCCAAGGAGCTGGAGAAGTT
CTCCAAAGTCACCTTTGACTACGCAAGTTTTGATGCTCAGGTTTTTGGCAAACGTATGCTTGCC
CCAAAGATTCAGACCAGCGAAACCTCACCCAAAGCCTTCCAATGCTTCGATTACTCTCATGATG
CTGAGGCTGCACACATGGCTGCCACAGCCATCCTGAACCTCTCCACTCGGTGTTGGGAAATGCC
AGAGAACCTCAGCACAAAGCCACAGGACCTCCCCAGCAAGGCTGTGGACATTGAGGTAGATGAG
AACGGAACTCTGGACCTGAGCATGCACAAGCACCGCAAGCGAGAAAACACTTTTCCCAGCAGCA
GCAGCTGCAGTAGCAGCCCTGGTGTCAAGTCTCCTGATGTCTCTCAGCGTCAGAGCAGTACCAG
CGCCCCCAGCAGCTCTATGACCTCACCCCAGTCCAGCCAGGCCTCTCGCCAGGATGAGTGGGAC
CGTCCTCTAGACTACACCAAACCTAGCCGACTCCGAGAGGAAGAGCCTGAGGAGTCGGAGCCAG
CAGCACACTCTTTTGCTTCTTCTGAAGCAGATGATCAGGAGGTGTCAGAAGAGAACTTTGAAGA
GCGAAAGTACCCAGGGGAAGTCACCCTAACCAACTTTAAGCTGAAGTTTCTTTCCAAGGACATA
AAGAAGGAGCTTCTCACCTGTCCCACCCCCGGCTGTGACGGTAGTGGCCATATCACCGGGAACT
ATGCCTCCCATCGCAGCCTCTCTGGTTGCCCTCTTGCTGACAAGAGCCTCAGAAACCTCATGGC
TGCCCACTCTGCTGACCTCAAGTGCCCCACACCTGGCTGTGATGGCTCTGGCCACATAACAGGG
AACTATGCTTCACACCGGAGTTTGTCAGGCTGCCCACGTGCCAAGAAGAGTGGACTCAAGGTGG
CGCCTACCAAGGATGACAAGGAGGACCCCGAGTTGATGAAGTGCCCAGTTCCAGGATGTGTGGG
GCTCGGCCACATCAGCGGCAAATATGCCTCTCACAGGAGTGCTTCTGGCTGCCCACTGGCTGCT
CGGAGGCAGAAAGAGGGAGCTCTCAATGGTTCATCTTTCTCATGGAAGTCGCTGAAGAATGAGG
GCCCTACTTGCCCCACCCCAGGTTGTGACGGCTCTGGCCATGCCAATGGCAGTTTCCTCACTCA
CCGAAGTTTGTCCGGCTGTCCCAGAGCAACCTTTGCTGGAAAGAAAGGAAAACTCTCAGGGGAT
GAGATTCTCAGCCCAAAGTTCAAGACAAGTGATGTGCTGGAGAATGATGAGGAGATCAAGCAGC
TAAATCAGGAGATACGAGACTTGAATGAGTCCAACTTGGAAATGGAGGCTGCCATGGTGCAGCT
GCAGTCTCAGATATCTTCCATGGAGAAGAACCTGAAGAACATCGAGGAGGAGAACAAGCTCATT
GAGGAGCAGAATGAGGCCCTGTTTCTGGAATTGTCTGGGCTTAGCCAGGCCCTCATCCAAAGTC
TTGCCAATATTCGCCTTCCACACCTGGAGCCAATATGTGAACAGAATTTTGACGCCTATGTGAA
CACCCTCACTGACATGTACTCCAATCAGGACTGCTACCAGAATCCGGAGAACAAAGGCCTTCTG
GAAACGATCAAGCAAGCTGTGAGGGGCATTCAGGTCTAGGCTGCACTGCACACAGGAGTCTCTG
CTCTGATCCTCACAGTGAGGACCCTGACTTATAGCCACTTCTAATTGGAAGCCTGGGTGCAGCC
TTGGGCAGCTTACCCAAAGGGGAGCCTGGAAATCAGTGTCTCCTATGATGTCCCCATTAGGCCT
AGGCATAGAAGACCTCTCTATGTGAGTGCCTGGGGACACTGAAGTATTACAAAGCGATTTATTT
TTGTTTTTTGTTTTGTTTTGTTTTAAAGAAGTCTGAAGAGCAGCTCAAAGTCTCCGGTGGAAAC
TCATGGACAAGGTTCTCAGGGAAGTTTTGGAGTTTGCAGCCACAGTATTCCATTGTTTGTCAAG
GTTGGGAGGGCATCCATGGACTAGACGGGTGTTAGTCTCAGCAGGAGGGCACGCCTAGGTTTCT
GGCTATGCTCACTGAGGCCCACGTGGCAAGTATGTTTTGTGTTTTCATTTAATTCAATTTTGTG
TTAAAGGTGCACAATACTTTGCTTCAGAGGTGAATCTAGGAACAGGCTTCCCAGATGGCAGTCT
ACACAGTTGATGAACATCATAGAAAGCCAGCTGAAGGTTTTTTTATTCAGTTGGAGGCCCTGAA
AAATCAGCCACTTATTTGGGCAGCAGATGCCTTTAGGCTGTGCAGACCTGCTTTCTCCGGGCTC
CAGTCTTTAACCCCTGGCCTGGGCTCTAAGTCCAAGACCACTGGGCCAAACCTCTGGTTCCTGT
ACCTCTATCCGGGTGCTGGACCCATCATTGTGTCTTTTCCTGTGTAGGTTTGCTCCTTGTATCC
AAGGTGACCACGGTGGGGACGGTGAGACCAGAGGTAAATTGTTACGGGAGGCCACCAAGATTTC
ACTTCTTTATAGGTTCATTTAAGATGTGAAAAGGATAAATTTTAATTTAATGTGTTAAAAACAC
AATGTTCTTACTGTGTAAATAGAGTCCAAGTCAATTGTGACTGCAATTCCAAATTAGTATTTAA
AAGTAGAGAAATTGCACTTCCTGAAAGACACTGAAAGTAGTTAGTTTATTCTGTAAAGTATTTA
ATTTTGTCATGATATAAGTATTTATATTCTTACCCTCTTATGTTAATGTTTGCTATTTATTATT
TTTATTTATTTATTTTATACTATTTCAACTAGACTACACACTAGGGCACCATAAGAGTTAAATA
AGTTAAATTGAAACAAAAACATTTATTTGACTATAAGATAGGCCACGAAGAATTGATATAACCT
CTAGTTATAATTTTGATGCAACTGAGTTATTTTTTATATATTTTGTTATTTATTCTTTTAATAA
TGGAATTTTTTAAAAAAGTATTTTGTAACTGAGGAATTTTGATAATTTGGGTTTTTCTTCCCAT
TGGTCCACCAGAGAGAAAGGTGTTTGGTTTTCTTTTTCCCATTGGGTTCCTTTTGTCAGGCCAA
TAACAGCAAATGGAATTCTGTATTTATTATTATTTAAGTGTAGTGCAGATGTGTGTGCTCTGGT
GTTTCTTGTGTTGCATTTGTGGAGGTTCTTATGGATGATTCATGTTGCTGTGAGGGAGTGCTGG
CCATGGTCAGTTCTAGGCAATGGACTCACTGGCCAACCTGCCCAGGATCTTGATACCCCAATAC
TGTGACCCTCCTTCCTCAGGAAACACGTTGGACCCACAGTACCTCGTGGTGTGTTTGGAGGGTG
ATTTCTAATAAAAGTCTCACTGTGCATA

hide sequence

RefSeq Acc Id:

XM_063284248 ⟹ XP_063140318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,528 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284249 ⟹ XP_063140319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,263,569 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284250 ⟹ XP_063140320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,701 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284251 ⟹ XP_063140321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,113 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284252 ⟹ XP_063140322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,571 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284253 ⟹ XP_063140323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,572 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284254 ⟹ XP_063140324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,291,398 - 189,327,844 (+)	NCBI

RefSeq Acc Id:

XM_063284255 ⟹ XP_063140325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,697 - 189,320,301 (+)	NCBI

RefSeq Acc Id:

XM_063284256 ⟹ XP_063140326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,698 - 189,320,301 (+)	NCBI

RefSeq Acc Id:

XM_063284257 ⟹ XP_063140327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,698 - 189,314,781 (+)	NCBI

RefSeq Acc Id:

XM_063284258 ⟹ XP_063140328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	189,267,698 - 189,314,780 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102085	(Get FASTA)	NCBI Sequence Viewer
	XP_063140318	(Get FASTA)	NCBI Sequence Viewer
	XP_063140319	(Get FASTA)	NCBI Sequence Viewer
	XP_063140320	(Get FASTA)	NCBI Sequence Viewer
	XP_063140321	(Get FASTA)	NCBI Sequence Viewer
	XP_063140322	(Get FASTA)	NCBI Sequence Viewer
	XP_063140323	(Get FASTA)	NCBI Sequence Viewer
	XP_063140324	(Get FASTA)	NCBI Sequence Viewer
	XP_063140325	(Get FASTA)	NCBI Sequence Viewer
	XP_063140326	(Get FASTA)	NCBI Sequence Viewer
	XP_063140327	(Get FASTA)	NCBI Sequence Viewer
	XP_063140328	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88668	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032420.5
	ENSRNOP00000078394.2
	ENSRNOP00000080274
	ENSRNOP00000080274.1
	ENSRNOP00000087460
	ENSRNOP00000087460.1
	ENSRNOP00000100471
	ENSRNOP00000100471.1

RefSeq Acc Id:

NP_001102085 ⟸ NM_001108615

- UniProtKB:

A0A8I5ZQB6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVANSDEGEKDLFIQPEDVEEVIEVTSERSQEPCPQSLKDMVNEESSKQKGVLGHEEEEEEEEE
EEEEEEEGEEGEEEEEEEEEEDEEDEEEDEEEEEEEEEAASNVLFGDDTTHTSVQKASSEFRGP
ELSSPKPEYSVIVEVRSDDDKDEDSHSQKSAVTDESEMYDMMTRGNLGLLEQAIALKAEQVRAV
CESGCPPAEQGHLGPGEPGKMAKPLDVVRKSCYNKDPSRVEKREIKCPTPGCDGTGHVTGLYPH
HRSLSGCPHKDRIPPEILAMHENVLKCPTPGCTGQGHVNSNRNTHRSLSGCPIAAAEKLAKSHE
KQQLQTGDPPKNNSNSDRILRPMCFVKQLEVPPYGSYRPNVAPTTPRANLAKELEKFSKVTFDY
ASFDAQVFGKRMLAPKIQTSETSPKAFQCFDYSHDAEAAHMAATAILNLSTRCWEMPENLSTKP
QDLPSKAVDIEVDENGTLDLSMHKHRKRENTFPSSSSCSSSPGVKSPDVSQRQSSTSAPSSSMT
SPQSSQASRQDEWDRPLDYTKPSRLREEEPEESEPAAHSFASSEADDQEVSEENFEERKYPGEV
TLTNFKLKFLSKDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLK
CPTPGCDGSGHITGNYASHRSLSGCPRAKKSGLKVAPTKDDKEDPELMKCPVPGCVGLGHISGK
YASHRSASGCPLAARRQKEGALNGSSFSWKSLKNEGPTCPTPGCDGSGHANGSFLTHRSLSGCP
RATFAGKKGKLSGDEILSPKFKTSDVLENDEEIKQLNQEIRDLNESNLEMEAAMVQLQSQISSM
EKNLKNIEEENKLIEEQNEALFLELSGLSQALIQSLANIRLPHLEPICEQNFDAYVNTLTDMYS
NQDCYQNPENKGLLETIKQAVRGIQV

hide sequence

Ensembl Acc Id:

ENSRNOP00000032420 ⟸ ENSRNOT00000031448

Ensembl Acc Id:

ENSRNOP00000087460 ⟸ ENSRNOT00000102710

Ensembl Acc Id:

ENSRNOP00000080274 ⟸ ENSRNOT00000094940

Ensembl Acc Id:

ENSRNOP00000078394 ⟸ ENSRNOT00000096392

RefSeq Acc Id:	XP_063140319 ⟸ XM_063284249
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZQB6 (UniProtKB/TrEMBL), A0A8I6GF57 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140321 ⟸ XM_063284251
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140318 ⟸ XM_063284248
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZQB6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140322 ⟸ XM_063284252
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZQB6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140323 ⟸ XM_063284253
- Peptide Label:	isoform X5
- UniProtKB:	A6KLW0 (UniProtKB/TrEMBL), D3ZYT5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140325 ⟸ XM_063284255
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063140326 ⟸ XM_063284256
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063140327 ⟸ XM_063284257
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063140328 ⟸ XM_063284258
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063140320 ⟸ XM_063284250
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZKR6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140324 ⟸ XM_063284254
- Peptide Label:	isoform X5
- UniProtKB:	A6KLW0 (UniProtKB/TrEMBL), D3ZYT5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100471 ⟸ ENSRNOT00000172969

Protein Domains

Myelin transcription factor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYT5-F1-model_v2	AlphaFold	D3ZYT5	1-922	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304899	AgrOrtholog
BioCyc Gene	G2FUF-46259	BioCyc
Ensembl Genes	ENSRNOG00000017346	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031448.6	UniProtKB/TrEMBL
	ENSRNOT00000094940	ENTREZGENE
	ENSRNOT00000094940.2	UniProtKB/TrEMBL
	ENSRNOT00000096392.2	UniProtKB/TrEMBL
	ENSRNOT00000102710	ENTREZGENE
	ENSRNOT00000102710.2	UniProtKB/TrEMBL
	ENSRNOT00000172969	ENTREZGENE
	ENSRNOT00000172969.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.320.30	UniProtKB/TrEMBL
InterPro	Myelin_TF	UniProtKB/TrEMBL
	Znf_C2HC	UniProtKB/TrEMBL
	Znf_C2HC_sf	UniProtKB/TrEMBL
KEGG Report	rno:362291	UniProtKB/TrEMBL
NCBI Gene	362291	ENTREZGENE
PANTHER	MYELIN TRANSCRIPTION FACTOR 1	UniProtKB/TrEMBL
	MYELIN TRANSCRIPTION FACTOR 1-LIKE PROTEIN	UniProtKB/TrEMBL
	MYELIN TRANSCRIPTION FACTOR 1-RELATED	UniProtKB/TrEMBL
Pfam	MYT1	UniProtKB/TrEMBL
	zf-C2HC	UniProtKB/TrEMBL
PhenoGen	Myt1	PhenoGen
PROSITE	ZF_CCHHC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017346	RatGTEx
Superfamily-SCOP	SSF103637	UniProtKB/TrEMBL
UniProt	A0A8I5ZKR6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQB6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GF57	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LH20_RAT	UniProtKB/TrEMBL
	A6KLW0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYT5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Myt1	myelin transcription factor 1	Myt1_predicted	myelin transcription factor 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Myt1_predicted	myelin transcription factor 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar