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Gene: Trpm3 (transient receptor potential cation channel, subfamily M, member 3) Rattus norvegicus

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Symbol:

Trpm3

Name:

transient receptor potential cation channel, subfamily M, member 3

RGD ID:

1304888

Description:

Predicted to enable G-protein beta/gamma-subunit complex binding activity; monoatomic ion transmembrane transporter activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in metal ion transport and protein homotetramerization. Predicted to act upstream of or within monoatomic cation transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in cataract. Orthologous to human TRPM3 (transient receptor potential cation channel subfamily M member 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC309407; transient receptor potential cation channel subfamily M member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	229,099,741 - 229,984,172 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	229,099,542 - 229,984,172 (+)	Ensembl				GRCr8
mRatBN7.2	1	219,673,200 - 220,557,610 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	219,672,892 - 220,560,717 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	228,126,334 - 228,996,882 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	235,056,436 - 235,926,937 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	227,874,450 - 228,744,986 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	239,741,572 - 240,757,583 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	240,355,149 - 240,757,583 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	247,942,661 - 248,041,913 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	1	247,027,120 - 247,810,732 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	225,377,097 - 226,276,992 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	216,900,275 - 217,774,744 (+)	NCBI		Celera
RGSC_v3.1	1	225,865,833 - 226,439,441 (+)	NCBI
Cytogenetic Map	1	q51	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amphetamine abuse (ISO)

autosomal dominant intellectual developmental disorder (ISO)

Birk-Barel syndrome (ISO)

cataract (ISS)

Cataract 50 with or without Glaucoma (ISO)

Developmental Disabilities (ISO)

epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

microphthalmia (ISS)

mulibrey nanism (ISO)

NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, DYSMORPHIC FACIES, AND SKELETAL ANOMALIES, WITH OR WITHOUT SEIZURES (ISO)

Neurodevelopmental Disorders (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

amphotericin B (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

carbamazepine (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

doxorubicin (EXP)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fulvestrant (ISO)

genistein (ISO)

glyphosate (EXP)

liquiritigenin (ISO)

maneb (ISO)

methamphetamine (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

pregnenolone sulfate (ISO)

propanal (ISO)

pyridaben (ISO)

sarin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (IEA,ISO)

calcium ion transport (IBA)

monoatomic cation transmembrane transport (IBA,IEA)

monoatomic cation transport (ISO)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

protein homotetramerization (ISO)

protein tetramerization (IEA)

sodium ion transport (ISO)

transmembrane transport (IEA)

zinc ion transmembrane transport (ISO)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

Molecular Function

calcium channel activity (IBA,IEA,ISO)

calmodulin binding (IEA)

G-protein beta/gamma-subunit complex binding (ISO)

monoatomic cation channel activity (IEA,ISO)

monoatomic ion channel activity (IEA)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

temperature-gated ion channel activity (ISO)

zinc ion transmembrane transporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15824111	PMID:17712480	PMID:18978782	PMID:20163522	PMID:21257751	PMID:21948387	PMID:21955047	PMID:33030499	PMID:33166100	PMID:33296617	PMID:33518671	PMID:34884938
PMID:35413036	PMID:37146443

Genomics

Comparative Map Data

Trpm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	229,099,741 - 229,984,172 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	229,099,542 - 229,984,172 (+)	Ensembl				GRCr8
mRatBN7.2	1	219,673,200 - 220,557,610 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	219,672,892 - 220,560,717 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	228,126,334 - 228,996,882 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	235,056,436 - 235,926,937 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	227,874,450 - 228,744,986 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	239,741,572 - 240,757,583 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	240,355,149 - 240,757,583 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	247,942,661 - 248,041,913 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	1	247,027,120 - 247,810,732 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	225,377,097 - 226,276,992 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	216,900,275 - 217,774,744 (+)	NCBI		Celera
RGSC_v3.1	1	225,865,833 - 226,439,441 (+)	NCBI
Cytogenetic Map	1	q51	NCBI

TRPM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	70,529,060 - 71,446,971 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	70,529,060 - 71,446,977 (-)	Ensembl			hg38	GRCh38
GRCh37	9	73,143,976 - 74,061,887 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	72,339,769 - 72,926,334 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	43,740,296 - 44,308,807 (-)	NCBI		Celera
Cytogenetic Map	9	q21.12-q21.13	NCBI
HuRef	9	42,990,124 - 43,559,409 (-)	NCBI		HuRef
CHM1_1	9	73,296,608 - 73,882,917 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	82,695,847 - 83,597,417 (-)	NCBI		T2T-CHM13v2.0

Trpm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	22,114,789 - 22,972,774 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	22,116,410 - 22,972,774 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	22,137,797 - 22,995,410 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	22,139,046 - 22,995,410 (+)	Ensembl			mm10	GRCm38
MGSCv37	19	22,213,607 - 23,064,374 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	22,206,214 - 23,056,981 (+)	NCBI		MGSCv36	mm8
Celera	19	22,863,961 - 23,712,483 (+)	NCBI		Celera
Cytogenetic Map	19	B	NCBI
cM Map	19	16.05	NCBI

Trpm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955434	1,725,692 - 2,542,077 (+)	Ensembl
ChiLan1.0	NW_004955434	2,017,809 - 2,543,827 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRPM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	69,729,091 - 70,634,552 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	69,735,031 - 70,640,633 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	53,367,505 - 54,272,917 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	69,286,220 - 70,189,177 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	69,292,593 - 69,606,949 (-)	Ensembl			panPan2	panpan1.1

TRPM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	86,525,054 - 87,023,561 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	86,242,487 - 87,017,292 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	86,997,042 - 87,495,355 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	86,977,918 - 87,572,008 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	86,695,268 - 87,570,615 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	86,738,803 - 87,230,190 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	86,444,184 - 86,935,800 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	87,201,388 - 87,693,419 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Trpm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	133,674,904 - 134,486,513 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936503	6,690,043 - 7,497,963 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936503	6,688,476 - 7,188,417 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRPM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	223,836,213 - 224,680,389 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	223,833,263 - 224,682,424 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	250,297,464 - 250,831,887 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRPM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	81,608,301 - 82,616,349 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	81,609,229 - 81,925,984 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	70,019,264 - 70,927,870 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trpm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624736	1,660,831 - 2,514,430 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624736	1,972,654 - 2,516,053 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Trpm3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	22,210,198 - 23,061,549 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Trpm3
6746 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	651
Count of miRNA genes:	292
Interacting mature miRNAs:	372
Transcripts:	ENSRNOT00000018521
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8693637	Alc29	Alcohol consumption QTL 29	2.7	0.258	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	243666627	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
5508828	Leukc3	Leukocyte quantity QTL 3			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	1	227535119	233480676	Rat
61455	Niddm7	Non-insulin dependent diabetes mellitus QTL 7	5.5		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	223964326	248681945	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
8693661	Alc34	Alcohol consumption QTL 34	2.2	0.611	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	203300512	229359342	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1331790	Bp201	Blood pressure QTL 201	3.127		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	221820316	234540296	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	185979875	230979875	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	197807365	233480676	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
634340	Hcar5	Hepatocarcinoma resistance QTL 5	8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	223964326	236074012	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
8693618	Alc25	Alcohol consumption QTL 25	3	0.28	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	217412367	238041033	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
2325727	Pia41	Pristane induced arthritis QTL 41			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	188241285	233241285	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Markers in Region

D1Rat298

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	229,359,117 - 229,359,342 (+)	Marker Load Pipeline
mRatBN7.2	1	219,932,573 - 219,932,796 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,017,117 - 240,017,341	NCBI	Rnor6.0
Rnor_5.0	1	247,303,036 - 247,303,260	UniSTS	Rnor5.0
RGSC_v3.4	1	225,625,031 - 225,625,256	RGD	RGSC3.4
RGSC_v3.4	1	225,625,032 - 225,625,256	UniSTS	RGSC3.4
Celera	1	217,158,892 - 217,159,116	UniSTS
RGSC_v3.1	1	225,789,054 - 225,789,279	RGD
SHRSP x BN Map	1	116.5799	UniSTS
SHRSP x BN Map	1	116.5799	RGD
Cytogenetic Map	1	q51	UniSTS

D1Rat370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	229,592,115 - 229,592,339 (+)	Marker Load Pipeline
mRatBN7.2	1	220,165,574 - 220,165,798 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,251,616 - 240,251,839	NCBI	Rnor6.0
Rnor_5.0	1	247,538,736 - 247,538,959	UniSTS	Rnor5.0
RGSC_v3.4	1	225,860,708 - 225,860,932	RGD	RGSC3.4
RGSC_v3.4	1	225,860,709 - 225,860,932	UniSTS	RGSC3.4
Celera	1	217,385,744 - 217,385,967	UniSTS
RGSC_v3.1	1	226,024,731 - 226,024,955	RGD
SHRSP x BN Map	1	116.5799	UniSTS
SHRSP x BN Map	1	116.5799	RGD
Cytogenetic Map	1	q51	UniSTS

D1Rat369

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	229,887,667 - 229,887,924 (+)	Marker Load Pipeline
mRatBN7.2	1	220,461,115 - 220,461,370 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,660,288 - 240,660,546	NCBI	Rnor6.0
Rnor_5.0	1	247,946,430 - 247,946,688	UniSTS	Rnor5.0
RGSC_v3.4	1	226,179,791 - 226,180,047	RGD	RGSC3.4
RGSC_v3.4	1	226,179,792 - 226,180,048	UniSTS	RGSC3.4
Celera	1	217,677,579 - 217,677,821	UniSTS
RGSC_v3.1	1	226,343,814 - 226,344,070	RGD
SHRSP x BN Map	1	116.5799	UniSTS
SHRSP x BN Map	1	116.5799	RGD
Cytogenetic Map	1	q51	UniSTS

D19Ertd744e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,551,196 - 220,551,416 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,751,174 - 240,751,393	NCBI	Rnor6.0
Rnor_5.0	1	248,035,504 - 248,035,723	UniSTS	Rnor5.0
RGSC_v3.4	1	226,270,583 - 226,270,802	UniSTS	RGSC3.4
Celera	1	217,768,335 - 217,768,554	UniSTS
Cytogenetic Map	1	q51	UniSTS

RH144107

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,556,140 - 220,556,311 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,756,114 - 240,756,284	NCBI	Rnor6.0
Rnor_5.0	1	248,040,444 - 248,040,614	UniSTS	Rnor5.0
RGSC_v3.4	1	226,275,523 - 226,275,693	UniSTS	RGSC3.4
Celera	1	217,773,275 - 217,773,445	UniSTS
RH 3.4 Map	1	1615.31	UniSTS
Cytogenetic Map	1	q51	UniSTS

BE102851

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,488,174 - 220,488,366 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,687,347 - 240,687,538	NCBI	Rnor6.0
Rnor_5.0	1	247,973,370 - 247,973,561	UniSTS	Rnor5.0
RGSC_v3.4	1	226,206,867 - 226,207,058	UniSTS	RGSC3.4
Celera	1	217,704,852 - 217,705,043	UniSTS
RH 3.4 Map	1	1614.3	UniSTS
Cytogenetic Map	1	q51	UniSTS

BE107788

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,127,904 - 220,128,108 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,214,177 - 240,214,380	NCBI	Rnor6.0
Rnor_5.0	1	247,501,219 - 247,501,422	UniSTS	Rnor5.0
RGSC_v3.4	1	225,820,965 - 225,821,168	UniSTS	RGSC3.4
Celera	1	217,347,814 - 217,348,017	UniSTS
RH 3.4 Map	1	1615.2	UniSTS
Cytogenetic Map	1	q51	UniSTS

BE108061

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,051,657 - 220,051,840 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,133,150 - 240,133,332	NCBI	Rnor6.0
Rnor_5.0	1	247,420,108 - 247,420,290	UniSTS	Rnor5.0
RGSC_v3.4	1	225,745,103 - 225,745,285	UniSTS	RGSC3.4
Celera	1	217,271,340 - 217,271,522	UniSTS
RH 3.4 Map	1	1617.5	UniSTS
Cytogenetic Map	1	q51	UniSTS

BF405786

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,121,237 - 220,121,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,207,089 - 240,207,273	NCBI	Rnor6.0
Rnor_5.0	1	247,494,047 - 247,494,231	UniSTS	Rnor5.0
RGSC_v3.4	1	225,814,121 - 225,814,305	UniSTS	RGSC3.4
Celera	1	217,341,142 - 217,341,326	UniSTS
RH 3.4 Map	1	1614.9	UniSTS
Cytogenetic Map	1	q51	UniSTS

RH135031

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,337,603 - 220,337,784 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,423,678 - 240,423,858	NCBI	Rnor6.0
Rnor_5.0	1	247,710,868 - 247,711,048	UniSTS	Rnor5.0
RGSC_v3.4	1	226,033,672 - 226,033,852	UniSTS	RGSC3.4
Celera	1	217,555,078 - 217,555,258	UniSTS
RH 3.4 Map	1	1615.51	UniSTS
Cytogenetic Map	1	q51	UniSTS

RH135304

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	219,811,320 - 219,811,525 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	239,881,284 - 239,881,488	NCBI	Rnor6.0
Rnor_5.0	1	247,166,315 - 247,166,519	UniSTS	Rnor5.0
RGSC_v3.4	1	225,503,160 - 225,503,364	UniSTS	RGSC3.4
Celera	1	217,037,876 - 217,038,100	UniSTS
Cytogenetic Map	1	q51	UniSTS

BF415773

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,144,561 - 220,144,692 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,230,832 - 240,230,962	NCBI	Rnor6.0
Rnor_5.0	1	247,517,874 - 247,518,004	UniSTS	Rnor5.0
RGSC_v3.4	1	225,837,620 - 225,837,750	UniSTS	RGSC3.4
Celera	1	217,364,469 - 217,364,599	UniSTS
RH 3.4 Map	1	1617.32	UniSTS
Cytogenetic Map	1	q51	UniSTS

BF416487

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	220,472,338 - 220,472,485 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	240,671,511 - 240,671,657	NCBI	Rnor6.0
Rnor_5.0	1	247,957,534 - 247,957,680	UniSTS	Rnor5.0
RGSC_v3.4	1	226,191,031 - 226,191,177	UniSTS	RGSC3.4
Celera	1	217,689,016 - 217,689,162	UniSTS
RH 3.4 Map	1	1615.92	UniSTS
Cytogenetic Map	1	q51	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	11	63	178	60	59	28	30	28	6	266	126	11	164	91	102	31	26	26

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001354180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF673688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF673689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF673690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018521 ⟹ ENSRNOP00000018521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,311 - 229,984,172 (+)	Ensembl
mRatBN7.2 Ensembl	1	220,008,655 - 220,557,610 (+)	Ensembl
Rnor_6.0 Ensembl	1	240,355,149 - 240,757,583 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098066 ⟹ ENSRNOP00000081604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,510 - 229,769,375 (+)	Ensembl
mRatBN7.2 Ensembl	1	220,008,970 - 220,342,837 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109194 ⟹ ENSRNOP00000084148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,099,542 - 229,984,172 (+)	Ensembl
mRatBN7.2 Ensembl	1	219,672,892 - 220,557,610 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113385 ⟹ ENSRNOP00000083902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,311 - 229,984,172 (+)	Ensembl
mRatBN7.2 Ensembl	1	219,672,892 - 220,557,610 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114759 ⟹ ENSRNOP00000084016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,311 - 229,984,106 (+)	Ensembl
mRatBN7.2 Ensembl	1	220,008,655 - 220,560,717 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114800 ⟹ ENSRNOP00000093587

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,311 - 229,984,172 (+)	Ensembl
mRatBN7.2 Ensembl	1	220,008,655 - 220,557,610 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115994 ⟹ ENSRNOP00000094201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,510 - 229,768,396 (+)	Ensembl
mRatBN7.2 Ensembl	1	220,008,970 - 220,341,856 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000145132 ⟹ ENSRNOP00000111011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	229,435,311 - 229,984,172 (+)	Ensembl

RefSeq Acc Id:

NM_001191562 ⟹ NP_001178491

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	229,099,741 - 229,984,172 (+)	NCBI
mRatBN7.2	1	219,673,200 - 220,557,610 (+)	NCBI
Rnor_6.0	1	239,741,572 - 240,757,583 (+)	NCBI
Rnor_5.0	1	247,027,120 - 247,810,732 (+)	NCBI
Rnor_5.0	1	247,942,661 - 248,041,913 (+)	NCBI
Celera	1	216,900,275 - 217,774,744 (+)	NCBI

Sequence:

show sequence

ATGGGCAAGAAGTGGAGGGACGCGGGCGAGATGGAGCGAGGCTGCTCTGATCGCGAGGGCAGCG
CGGAGAGCCGCCGGCGCAGCCGCAGCGCCAGCCGGGGCAGGTTTGCCGAGTCGTGGAAAAGGTT
AAGTTCCAAGCAGGGGTCCACCAAGCGCTCGGGACTGCCAGCACAGCAGACACCGGCTCAGAAA
TCCTGGATTGAAAGAGCATTTTATAAAAGAGAATGTGTTCACATCATACCCAGCACCAAAGACC
CCCATAGGTGTTGCTGTGGGCGCCTGATAGGCCAGCATGTCGGACTCACTCCCAGTATCTCTGT
GCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCGAAATGACATCCAGTCTGAGAAGTGGTCT
ATCAGCAAACACACTCAGCTCAGCCCAACGGATGCTTTTGGGACTATTGAGTTCCAAGGAGGCG
GTCATTCCAACAAAGCCATGTATGTCCGAGTATCTTTTGATACGAAACCTGATCTCTTGCTACA
CCTGATGACCAAGGAATGGCAACTAGAGCTTCCCAAACTTCTCATCTCTGTGCACGGAGGGCTG
CAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAAGGGCTCATCAAAGCAGCCA
TGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAGGTGTCATCCGTCATGTGGGAGA
TGCCTTGAAGGACCACGCATCTAAGTCTCGAGGGAAGATATGCACCATAGGTATCGCACCCTGG
GGAATTGTGGAAAACCAGGAAGACCTGATCGGAAGAGATGTAGTCCGACCATACCAGACCATGT
CAAACCCTATGAGCAAGCTCACGGTTCTCAACAGCATGCACTCCCACTTCATCCTGGCTGACAA
TGGGACCACGGGAAAATACGGGGCCGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCA
CTCCAGAAGATAAACACAAGAATCGGTCAAGGGGTTCCAGTGGTGGCCCTCATCGTGGAAGGAG
GACCCAATGTGATCTCAATTGTTTTGGAATACCTTCGAGACACCCCTCCTGTACCAGTCGTGGT
CTGCGATGGCAGTGGACGGGCATCCGACATTCTGGCATTTGGGCATAAATATTCAGAAGAAGGC
GGTCTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAATACAGAAGACCTTCACATACA
CCCGCACCCAAGCCCAGCACCTGTTCATCATCCTCATGGAATGCATGAAGAAGAAGGAATTGAT
CACAGTGTTTCGAATGGGATCAGAAGGCCACCAGGACATTGATTTAGCTATCCTGACAGCACTA
CTCAAAGGAGCCAATGCATCCGCCCCAGACCAGCTGAGCTTAGCATTAGCCTGGAACAGAGTTG
ACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGGTAGGGTCCCTGGAGCAAGC
CATGCTGGATGCCCTAGTCCTGGACAGAGTGGACTTTGTGAAATTACTCATAGAAAACGGAGTA
AGCATGCACCGTTTTCTCACCATCTCCAGACTAGAGGAACTGTACAATACGAGACATGGGCCCT
CAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGGGAAACCTGCCCCCGGACTACAGAAT
CAGCCTGATAGACATTGGCCTGGTGATCGAGTACCTGATGGGTGGGGCTTACCGCTGCAACTAC
ACACGCAAGCGCTTTCGGACCCTCTACCACAATCTCTTTGGCCCCAAAAGGCCCAAAGCCTTGA
AACTGCTGGGAATGGAGGATGATATTCCCTTGAGGAGAGGAAGAAAGACAACTAAGAAACGTGA
GGAAGAGGTGGACATAGACTTGGATGACCCTGAGATCAACCACTTCCCATTCCCTTTCCATGAG
CTGATGGTGTGGGCTGTCCTCATGAAGAGGCAGAAGATGGCCCTGTTCTTCTGGCAGCATGGAG
AGGAGGCCATGGCTAAAGCCCTGGTGGCCTGCAAGCTCTGCAAAGCCATGGCCCATGAGGCTTC
TGAGAATGATATGGTGGATGACATTTCCCAAGAGCTGAACCACAACTCCAGGGACTTTGGCCAG
CTGGCTGTGGAGCTTTTGGACCAGTCCTACAAACAGGATGAGCAGCTGGCCATGAAACTGCTGA
CGTATGAGTTGAAGAACTGGAGCAATGCCACATGCCTGCAGCTGGCTGTGGCTGCCAAGCACCG
TGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACCGACATGTGGATGGGACGGCTCCGC
ATGCGAAAGAACTCAGGCCTCAAGGTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCT
TGGAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAAGAAATTCATCTCCAAGA
GAAGGAGCCGGAGGAACCGGAGAAGCCTACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACA
GCAATGTTGGGACGAAACAATGGGGAGTCATCCAGAAAGAAAGACGAAGAAGAAGTTCAAAGCA
GGCATCGACTAATCCCTGTGGGCCGAAAAATCTATGAGTTCTACAACGCACCCATTGTGAAGTT
CTGGTTCTACACTCTGGCGTACATTGGATACCTGATGCTCTTCAATTACATCGTGCTGGTGAAG
ATGGAGCGCTGGCCTTCCACTCAGGAATGGATCGTCATCTCCTACATCTTCACTCTGGGAATAG
AGAAGATGAGAGAGATCCTGATGTCAGAGCCGGGCAAGCTGCTGCAGAAAGTCAAAGTGTGGCT
GCAGGAGTACTGGAACGTCACGGACCTCATCGCCATCCTCCTCTTCTCGGTGGGAATGATCCTT
CGTCTTCAAGACCAGCCCTTCAGGAGTGACGGGAGGGTCATCTACTGTGTGAACATCATTTATT
GGTATATCCGTTTACTAGACATCTTCGGCGTGAACAAGTATCTGGGCCCATACGTAATGATGAT
TGGGAAAATGATGATAGACATGATGTACTTCGTCATCATTATGCTGGTGGTGCTGATGAGCTTT
GGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATA
TCTTCTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCGTAAGCA
AGTTTATGATTCTCATACACCAAAGTCAGCTCCCTGTGGACAGAACGAGACCCGAGAGGATGGC
AAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTGCCAGCCATCATGGCCTGCT
ACCTCTTAGTAGCGAACATCCTTCTGGTCAACCTCCTTATTGCTGTCTTCAACAATACATTTTT
TGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTC
CATGAGAGACCAGTTCTGCCTCCACCGCTCATCATCTTCAGTCACATGACCATGATATTCCAGC
ATGTGTGCTGCCGATGGAGGAAGCATGAGAGTGACCCGGATGAAAGGGACTACGGCCTGAAACT
CTTCATAACTGATGATGAGCTCAAGAAAGTACATGATTTTGAAGAGCAGTGCATAGAGGAATAT
TTCAGAGAGAAGGATGACCGCTTCAATTCATCCAATGATGAGAGGATACGGGTTACGTCAGAAA
GGGTGGAGAACATGTCCATGAGGCTGGAGGAAGTCAATGAGAGAGAACATTCCATGAAGGCTTC
ACTCCAGACTGTGGACATCCGGCTAGCACAGCTGGAGGATCTCATCGGGCGCATGGCCACTGCC
CTGGAGCGCCTAACAGGTCTGGAGCGGGCAGAGTCTAACAAAATCCGCTCAAGGACCTCCTCAG
ACTGCACAGACGCAGCCTACATCGTCCGCCAGAGCAGCTTCAACAGTCAGGAAGGGAACACCTT
CAAACTTCAAGAGAGTATAGACCCTGCAGGTGAGGAGACCATGTCCCCAACTTCTCCAACCTTA
ATGCCCCGTATGCGAAGCCATTCTTTCTATTCGGTCAATGTGAAAGACAAAGGTGGTATAGAAA
AGTTGGAGAGCATTTTCAAAGAAAGGTCCCTGAGCTTACACCGTGCTACTAGCTCCCACTCAGT
AGCCAAGGAGCCCAAAGCTCCTGCAGCCCCTGCAAACACCTTGGCCATTGTTCCTGATTCCAGA
AGACCATCGTCATGCATAGACATCTATGTCTCTGCCATGGATGAGCTCCACTGTGATATAGACC
CTCTGGATAATTCCATGAACATCCTTGGGCTGGGCGAGCCAAGCTTTTCAGCTCTAGCACCTTC
CACAGCCCCTTCAAGCAGTGCCTATGCAACCCTTGCACCTACAGACCGACCTCCAAGCAGGAGC
ATTGATTTTGAAGACCTCACCTCCATGGACACTAGATCTTTTTCTTCAGACTATACCCACCTCC
CAGAATGCCAAAACCCCTGGGACACAGACCCTCCAATGTACCATACCATCGAGCGTTCCAAGAG
TAGCCGCTACCTAGCCACTACACCCTTCCTTCTGGAAGAGGCCCCCATTGTAAAATCCCATAGC
TTTATGTTTTCTCCTTCAAGGAGTTACTACGCCAACTTTGGGGTGCCCGTGAAAACAGCAGAAT
ACACAAGTATTACAGACTGTATCGACACAAGATGTGTCAATGCCCCCCAAGCAATAGCTGACAG
AGCCACCTTCCCCGGAGGTCTCGGAGACAAAGTGGAAGATTTATCTTGTTGCCACCCTGAGCGA
GAAGCAGAGCTGAGCCACCCTAGCTCTGACAGTGAGGAAAATGAGGCCAGAGGCCGGAGAGCTG
CCAATCCGATATCCTCTCAGGAGACTGAAAATGCAGACAGAACCCTATCCAACAACATCACAGT
TCCCAAGATAGAGCGCGCCAACAGCTACTCGGCAGAGGAGCCAAGCGCGCCATATGCACATACC
AGAAAGAGCTTCTCCATCAGTGACAAGCTTGATAGACAGAGGAACACAGCAAGCCTCCGAAATC
CCTTCCAGAGAAGTAAGTCCTCCAAGCCGGAGGGCCGAGGGGACAGCGTATCCATGAGAAGACT
GTCTAGAACATCGGCTTTTCATAGCTTTGAGAGCAAGCACAACTAAACCATCTTCCCGTGTGTT
GCAGGAGGCTCAAGAATCCAGCACTAAAATTCTCCCCAATGCCCACCACGTTCCCCATTCCTTG
AGTTAGACCTGCTTTTTTCTTAGCTGAGCAAAACAAAGGGAGACATTAACTCAAAGGTAACCTC
TGGGCCACGGGTCAAGCAATTATTCCGTCTGGCCCAGTGCAAAACACAGGGGTTAAGGCATGTT
CCTATCTGTTGGGCAGGGAGGGGTAAAGATGACAGAAAAGGGGCTAGAGACGAATGGGTGTCAC
CAGGCACCGCAGAAAGCCATGAGCTCTGGGGAGCCAGTGGGCTCCAGCACTCTCCATGCCGACA
GGCATCTTGGGATGTCGGCCCTGTTATCAAGAGTCGAGGGCTAAATTGCAAAATGAAATAAAAG
TAGCTAGCGTACAAGATGAGATATTCTAAACTTCCCTTCTGTTTTCTTTTCGCATTGGTTCCAT
CACCGGTGACTAATGAAGAACATCCTTTTTATTCAGTATAAGCCGGCAGCAAGCAGTTCTACCT
AACGTCCCACATCCTTCTCATGCCAACACCTCTGTAATTGGTCATTATAAAGAAAACCAAGGTA
ACAGTCATATATACAGTTCACCTGTCTCTTATCTATTCACTTCCGGTGCCACAACTGTTTATCT
CTTTAGAAGAAAATAAGGGAACAGAAAAATGCCTTTTTTTTTTTTGTCTTGCGATCAAAATGAA
GGAAGAATTGATGTTGAAAGCAAAAGTCCTATGATTTATAATATACCACGGGCAATCAAGTCTA
GTCAAGTAAGCTCAGGATGAATGTACTTAGATAATTTTATATTTCTCAGTTATTTTGTATCTCA
CCTGTCATCAGAGAATTCACTCATCAAATATGTAATAGCGAACTTTAAGGAAAAGGTGGGAAGC
TCTAACATTAAGTTGCCAGTGGGATGTTGTTATAGTCTCACCGTTCATAGTGCGTGACGCTGCT
GTGTGGCCTTCATCACCTGCATGTCTCCACTATGTCCTCCAGACGCCTCCAAGATGTAACTGCC
AAATTTCCACACCGCTCATCACGTGACCATTTTGTATTTCAACACATGGTTATATGTGGATATT
TTCATACCTAGAGTTTAGCCATCCAATCTGGGTTCAGCATAAACTTAATCAGAGTTTTTCAAGG
GCTGGTATCTTTTTTATGGAAATGTTCCAAAGTACTTTTTAAGGAAGTTTAAAAAACCATAAAT
AACCTTAGATTTGACTAGGGTCTTGATATCCACCCAAACCCATCAGTTGCAGACAGGCCGTGAA
TAGGTTTCTTATTTACAAAGCTATAAAAAAGATACAGTAGGGCTAAATAGAGAACAAATATACC
ATATACAGAGTTCTATAGTTTATGCTGCTTACATGTACATCCACATACAGACACATGTTTATAT
ACAGTATATATACAGACACATAGAGATTTCTTAAAAGGCTTTGACTTCCTGTCATCTGATGGTA
TAATCAAGATTATTTTTTCGTGTCCAAGAAGTTTCACTGGAAAAAGTTGTTGTGCTATTGGATC
CACTGTTGAAATTATAATTT

hide sequence

RefSeq Acc Id:

NM_001354180 ⟹ NP_001341109

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	229,435,510 - 229,984,172 (+)	NCBI
mRatBN7.2	1	220,008,970 - 220,557,610 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178491	(Get FASTA)	NCBI Sequence Viewer
	NP_001341109	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABS12236	(Get FASTA)	NCBI Sequence Viewer
	ABS12237	(Get FASTA)	NCBI Sequence Viewer
	ABS12238	(Get FASTA)	NCBI Sequence Viewer
	EDM13011	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018521
	ENSRNOP00000018521.8
	ENSRNOP00000081604.1
	ENSRNOP00000083902.2
	ENSRNOP00000084016.1
	ENSRNOP00000084148
	ENSRNOP00000084148.1
	ENSRNOP00000093587.1
	ENSRNOP00000094201.1
	ENSRNOP00000111011.1

RefSeq Acc Id:	NP_001178491 ⟸ NM_001191562
- Peptide Label:	isoform a
- UniProtKB:	A0A8I6A0P1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKKWRDAGEMERGCSDREGSAESRRRSRSASRGRFAESWKRLSSKQGSTKRSGLPAQQTPAQK SWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRNDIQSEKWS ISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGL QNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPW GIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHIS LQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFGHKYSEEG GLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMECMKKKELITVFRMGSEGHQDIDLAILTAL LKGANASAPDQLSLALAWNRVDIARSQIFIYGQQWPVGSLEQAMLDALVLDRVDFVKLLIENGV SMHRFLTISRLEELYNTRHGPSNTLYHLVRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNY TRKRFRTLYHNLFGPKRPKALKLLGMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHE LMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQ LAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLR MRKNSGLKVILGILLPPSILSLEFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDMELT AMLGRNNGESSRKKDEEEVQSRHRLIPVGRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVK MERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMIL RLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSF GVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDRKQVYDSHTPKSAPCGQNETREDG KTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTF HERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDPDERDYGLKLFITDDELKKVHDFEEQCIEEY FREKDDRFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASLQTVDIRLAQLEDLIGRMATA LERLTGLERAESNKIRSRTSSDCTDAAYIVRQSSFNSQEGNTFKLQESIDPAGEETMSPTSPTL MPRMRSHSFYSVNVKDKGGIEKLESIFKERSLSLHRATSSHSVAKEPKAPAAPANTLAIVPDSR RPSSCIDIYVSAMDELHCDIDPLDNSMNILGLGEPSFSALAPSTAPSSSAYATLAPTDRPPSRS IDFEDLTSMDTRSFSSDYTHLPECQNPWDTDPPMYHTIERSKSSRYLATTPFLLEEAPIVKSHS FMFSPSRSYYANFGVPVKTAEYTSITDCIDTRCVNAPQAIADRATFPGGLGDKVEDLSCCHPER EAELSHPSSDSEENEARGRRAANPISSQETENADRTLSNNITVPKIERANSYSAEEPSAPYAHT RKSFSISDKLDRQRNTASLRNPFQRSKSSKPEGRGDSVSMRRLSRTSAFHSFESKHN hide sequence

Ensembl Acc Id:

ENSRNOP00000018521 ⟸ ENSRNOT00000018521

RefSeq Acc Id:	NP_001341109 ⟸ NM_001354180
- Peptide Label:	isoform b
- UniProtKB:	F1LN45 (UniProtKB/TrEMBL), A0A8I6ALW5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083902 ⟸ ENSRNOT00000113385

Ensembl Acc Id:

ENSRNOP00000084148 ⟸ ENSRNOT00000109194

Ensembl Acc Id:

ENSRNOP00000094201 ⟸ ENSRNOT00000115994

Ensembl Acc Id:

ENSRNOP00000081604 ⟸ ENSRNOT00000098066

Ensembl Acc Id:

ENSRNOP00000093587 ⟸ ENSRNOT00000114800

Ensembl Acc Id:

ENSRNOP00000084016 ⟸ ENSRNOT00000114759

Ensembl Acc Id:

ENSRNOP00000111011 ⟸ ENSRNOT00000145132

Protein Domains

Ion transport TRPM SLOG TRPM tetramerisation TRPM-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LN45-F1-model_v2	AlphaFold	F1LN45	1-1661	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304888	AgrOrtholog
BioCyc Gene	G2FUF-56142	BioCyc
Ensembl Genes	ENSRNOG00000027770	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018521	ENTREZGENE
	ENSRNOT00000018521.8	UniProtKB/TrEMBL
	ENSRNOT00000098066.2	UniProtKB/TrEMBL
	ENSRNOT00000109194	ENTREZGENE
	ENSRNOT00000109194.2	UniProtKB/TrEMBL
	ENSRNOT00000113385.2	UniProtKB/TrEMBL
	ENSRNOT00000114759.2	UniProtKB/TrEMBL
	ENSRNOT00000114800.2	UniProtKB/TrEMBL
	ENSRNOT00000115994.2	UniProtKB/TrEMBL
	ENSRNOT00000145132.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1010	UniProtKB/TrEMBL
InterPro	Ion_trans_dom	UniProtKB/TrEMBL
	TRPM	UniProtKB/TrEMBL
	TRPM-like	UniProtKB/TrEMBL
	TRPM_SLOG	UniProtKB/TrEMBL
	TRPM_tetra	UniProtKB/TrEMBL
	TRPM_tetra_sf	UniProtKB/TrEMBL
NCBI Gene	309407	ENTREZGENE
PANTHER	PTHR13800:SF7	UniProtKB/TrEMBL
	TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6	UniProtKB/TrEMBL
Pfam	Ion_trans	UniProtKB/TrEMBL
	LSDAT_euk	UniProtKB/TrEMBL
	TRPM2	UniProtKB/TrEMBL
	TRPM_tetra	UniProtKB/TrEMBL
PhenoGen	Trpm3	PhenoGen
RatGTEx	ENSRNOG00000027770	RatGTEx
UniProt	A0A8I5ZWW2_RAT	UniProtKB/TrEMBL
	A0A8I6A0D5_RAT	UniProtKB/TrEMBL
	A0A8I6A0P1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ALW5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G666_RAT	UniProtKB/TrEMBL
	A0A8I6GL22_RAT	UniProtKB/TrEMBL
	A0ABK0LWW6_RAT	UniProtKB/TrEMBL
	A7L636_RAT	UniProtKB/TrEMBL
	A7L637_RAT	UniProtKB/TrEMBL
	A7L638_RAT	UniProtKB/TrEMBL
	F1LN45	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Trpm3	transient receptor potential cation channel, subfamily M, member 3	Trpm3_predicted	transient receptor potential cation channel, subfamily M, member 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Trpm3_predicted	transient receptor potential cation channel, subfamily M, member 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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