Rc3h2 (ring finger and CCCH-type domains 2) - Rat Genome Database

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Gene: Rc3h2 (ring finger and CCCH-type domains 2) Rattus norvegicus
Analyze
Symbol: Rc3h2
Name: ring finger and CCCH-type domains 2
RGD ID: 1304833
Description: Predicted to enable DNA binding activity; RNA binding activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including T cell receptor signaling pathway; negative regulation of T-helper 17 cell differentiation; and regulation of RNA metabolic process. Predicted to act upstream of or within several processes, including T cell activation; hematopoietic or lymphoid organ development; and lymphocyte homeostasis. Predicted to be located in cell surface and membrane. Predicted to be active in cytoplasmic stress granule. Orthologous to human RC3H2 (ring finger and CCCH-type domains 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC311909; membrane associated DNA binding protein; Mnab; RING finger and CCCH-type zinc finger domain-containing protein 2; ring finger and CCCH-type zinc finger domains 2; roquin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,531,319 - 41,596,496 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl341,531,617 - 41,589,715 (-)EnsemblGRCr8
mRatBN7.2321,121,531 - 21,186,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,110,679 - 21,179,933 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx324,605,042 - 24,654,968 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,190,004 - 33,239,931 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,000,791 - 31,050,737 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0321,621,976 - 21,676,789 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl321,623,041 - 21,670,014 (-)Ensemblrn6Rnor6.0
Rnor_5.0326,852,132 - 26,915,899 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4317,133,485 - 17,183,391 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera319,572,305 - 19,622,174 (-)NCBICelera
RGSC_v3.1317,029,857 - 17,079,811 (-)NCBI
Cytogenetic Map3q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10938276   PMID:22658674   PMID:22681889   PMID:23583643   PMID:24448648   PMID:25282160   PMID:25697406   PMID:26249698   PMID:26489670  


Genomics

Comparative Map Data
Rc3h2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,531,319 - 41,596,496 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl341,531,617 - 41,589,715 (-)EnsemblGRCr8
mRatBN7.2321,121,531 - 21,186,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,110,679 - 21,179,933 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx324,605,042 - 24,654,968 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,190,004 - 33,239,931 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,000,791 - 31,050,737 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0321,621,976 - 21,676,789 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl321,623,041 - 21,670,014 (-)Ensemblrn6Rnor6.0
Rnor_5.0326,852,132 - 26,915,899 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4317,133,485 - 17,183,391 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera319,572,305 - 19,622,174 (-)NCBICelera
RGSC_v3.1317,029,857 - 17,079,811 (-)NCBI
Cytogenetic Map3q11NCBI
RC3H2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,844,556 - 122,905,359 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,844,556 - 122,905,513 (-)Ensemblhg38GRCh38
GRCh379125,606,835 - 125,667,638 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,651,553 - 124,707,383 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349122,695,629 - 122,734,765NCBI
Celera996,260,078 - 96,315,869 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef995,226,328 - 95,282,388 (-)NCBIHuRef
CHM1_19125,759,577 - 125,816,220 (-)NCBICHM1_1
T2T-CHM13v2.09135,041,909 - 135,102,585 (-)NCBIT2T-CHM13v2.0
Rc3h2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,260,078 - 37,313,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,260,081 - 37,312,915 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38237,368,861 - 37,424,370 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,370,069 - 37,422,903 (-)Ensemblmm10GRCm38
MGSCv37237,225,589 - 37,278,423 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36237,190,904 - 37,244,912 (-)NCBIMGSCv36mm8
Celera237,054,071 - 37,106,912 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Rc3h2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554195,054,289 - 5,103,926 (+)Ensembl
ChiLan1.0NW_0049554195,054,288 - 5,103,926 (+)NCBIChiLan1.0ChiLan1.0
RC3H2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,445,874 - 16,502,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,448,222 - 16,504,609 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,975,164 - 94,031,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19122,308,725 - 122,365,106 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9122,313,791 - 122,365,102 (-)EnsemblpanPan2panpan1.1
RC3H2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1959,881,889 - 59,943,271 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl959,881,966 - 59,929,341 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha959,076,857 - 59,138,347 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0960,801,185 - 60,862,372 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl960,801,013 - 60,849,592 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1959,559,803 - 59,621,280 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0959,874,804 - 59,936,355 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0959,967,554 - 60,029,349 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rc3h2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947191,568,045 - 191,624,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648711,341,700 - 11,389,859 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648711,341,663 - 11,393,275 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RC3H2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1263,772,173 - 263,822,104 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11263,769,403 - 263,822,101 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21297,236,916 - 297,279,474 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RC3H2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11215,230,206 - 15,283,253 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1215,238,124 - 15,280,689 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666079781,952 - 837,969 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rc3h2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476012,025,206 - 12,074,548 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rc3h2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1515,135,081 - 15,190,736 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rc3h2
393 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:112
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000012354
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)33779691953640235Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)33779691947904329Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
D3Got13  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8341,598,200 - 41,598,424 (+)Marker Load Pipeline
mRatBN7.2321,188,418 - 21,188,642 (+)MAPPERmRatBN7.2
Rnor_6.0321,678,440 - 21,678,663NCBIRnor6.0
Rnor_5.0326,917,615 - 26,917,838UniSTSRnor5.0
RGSC_v3.4317,185,160 - 17,185,484RGDRGSC3.4
RGSC_v3.4317,185,218 - 17,185,441UniSTSRGSC3.4
Celera319,623,986 - 19,624,209UniSTS
RGSC_v3.1317,081,590 - 17,081,813RGD
RH 3.4 Map3197.5RGD
RH 3.4 Map3197.5UniSTS
Cytogenetic Map3q11UniSTS
BE108864  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2321,169,390 - 21,169,540 (+)MAPPERmRatBN7.2
Rnor_6.0321,659,489 - 21,659,638NCBIRnor6.0
Rnor_5.0326,898,709 - 26,898,858UniSTSRnor5.0
RGSC_v3.4317,166,123 - 17,166,272UniSTSRGSC3.4
Celera319,604,936 - 19,605,085UniSTS
RH 3.4 Map3205.3UniSTS
Cytogenetic Map3q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012354   ⟹   ENSRNOP00000012354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,541,924 - 41,589,715 (-)Ensembl
mRatBN7.2 Ensembl321,132,188 - 21,179,933 (-)Ensembl
Rnor_6.0 Ensembl321,626,852 - 21,669,957 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078718   ⟹   ENSRNOP00000075040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,544,501 - 41,589,715 (-)Ensembl
mRatBN7.2 Ensembl321,110,679 - 21,179,933 (-)Ensembl
Rnor_6.0 Ensembl321,623,041 - 21,670,014 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154396   ⟹   ENSRNOP00000109299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,546,537 - 41,589,715 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165599   ⟹   ENSRNOP00000107324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,531,617 - 41,589,715 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169720   ⟹   ENSRNOP00000107523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl341,543,473 - 41,589,715 (-)Ensembl
RefSeq Acc Id: NM_001107839   ⟹   NP_001101309
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,546,537 - 41,596,443 (-)NCBI
mRatBN7.2321,136,749 - 21,186,661 (-)NCBI
Rnor_6.0321,626,852 - 21,676,679 (-)NCBI
Rnor_5.0326,852,132 - 26,915,899 (-)NCBI
RGSC_v3.4317,133,485 - 17,183,391 (-)RGD
Celera319,572,305 - 19,622,174 (-)RGD
Sequence:
RefSeq Acc Id: XM_008761754   ⟹   XP_008759976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,541,661 - 41,596,496 (-)NCBI
mRatBN7.2321,136,942 - 21,186,711 (-)NCBI
Rnor_6.0321,627,092 - 21,676,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105269   ⟹   XP_038961197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,531,319 - 41,596,496 (-)NCBI
mRatBN7.2321,121,531 - 21,186,711 (-)NCBI
RefSeq Acc Id: XR_005501919
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8341,541,661 - 41,596,496 (-)NCBI
mRatBN7.2321,131,873 - 21,186,711 (-)NCBI
RefSeq Acc Id: NP_001101309   ⟸   NM_001107839
- UniProtKB: A6JET0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759976   ⟸   XM_008761754
- Peptide Label: isoform X2
- UniProtKB: D3ZBM2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012354   ⟸   ENSRNOT00000012354
Ensembl Acc Id: ENSRNOP00000075040   ⟸   ENSRNOT00000078718
RefSeq Acc Id: XP_038961197   ⟸   XM_039105269
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K9L3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107324   ⟸   ENSRNOT00000165599
Ensembl Acc Id: ENSRNOP00000107523   ⟸   ENSRNOT00000169720
Ensembl Acc Id: ENSRNOP00000109299   ⟸   ENSRNOT00000154396
Protein Domains
C3H1-type   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZBM2-F1-model_v2 AlphaFold D3ZBM2 1-1187 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304833 AgrOrtholog
BioCyc Gene G2FUF-49941 BioCyc
Ensembl Genes ENSRNOG00000009196 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012354.8 UniProtKB/TrEMBL
  ENSRNOT00000078718 ENTREZGENE
  ENSRNOT00000078718.3 UniProtKB/TrEMBL
  ENSRNOT00000154396.1 UniProtKB/TrEMBL
  ENSRNOT00000165599 ENTREZGENE
  ENSRNOT00000165599.1 UniProtKB/TrEMBL
  ENSRNOT00000169720.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1790 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro ROQ_II UniProtKB/TrEMBL
  Roquin_1_2-like_ROQ UniProtKB/TrEMBL
  Roquin_domain UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:311909 UniProtKB/TrEMBL
NCBI Gene 311909 ENTREZGENE
PANTHER PTHR13139:SF2 UniProtKB/TrEMBL
  RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam ROQ_II UniProtKB/TrEMBL
  Roquin_1_2-like_ROQ UniProtKB/TrEMBL
  zf-CCCH UniProtKB/TrEMBL
  zf-RING_5 UniProtKB/TrEMBL
PhenoGen Rc3h2 PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009196 RatGTEx
SMART RING UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF90229 UniProtKB/TrEMBL
UniProt A0A0G2K9L3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LNQ3_RAT UniProtKB/TrEMBL
  A0ABK0LRZ1_RAT UniProtKB/TrEMBL
  A0ABK0LTB9_RAT UniProtKB/TrEMBL
  A6JET0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZBM2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Rc3h2  ring finger and CCCH-type domains 2  Rc3h2  ring finger and CCCH-type zinc finger domains 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Rc3h2  ring finger and CCCH-type zinc finger domains 2  Mnab_predicted  membrane associated DNA binding protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Mnab_predicted  membrane associated DNA binding protein (predicted)      Symbol and Name status set to approved 70820 APPROVED