Castor1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 14 | 83,309,710 - 83,314,123 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 79,086,136 - 79,090,549 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 79,086,136 - 79,090,548 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 83,526,728 - 83,531,138 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 84,766,807 - 84,771,217 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 81,212,732 - 81,217,144 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 84,447,552 - 84,457,396 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 84,447,885 - 84,452,367 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 85,129,496 - 85,139,061 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 14 | 84,840,815 - 84,845,228 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 14 | 84,859,946 - 84,863,912 (+) | NCBI | | | | | Celera | 14 | 77,997,130 - 78,001,543 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | q21 | NCBI | | | | |
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CASTOR1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 22 | 30,285,117 - 30,289,505 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 22 | 30,285,117 - 30,289,622 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 22 | 30,681,106 - 30,685,494 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 22 | 29,011,107 - 29,015,502 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 22 | 14,480,787 - 14,485,320 (-) | NCBI | | Celera | | | Cytogenetic Map | 22 | q12.2 | NCBI | | | | | HuRef | 22 | 13,642,884 - 13,647,417 (-) | NCBI | | HuRef | | | CHM1_1 | 22 | 30,640,242 - 30,644,751 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 22 | 30,748,432 - 30,752,844 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Castor1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 4,167,401 - 4,172,409 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 4,168,225 - 4,172,409 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 4,218,166 - 4,222,409 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 4,218,225 - 4,222,409 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 4,118,254 - 4,122,412 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 4,118,254 - 4,122,412 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 4,715,195 - 4,719,353 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | A1 | NCBI | | | | | cM Map | 11 | 2.94 | NCBI | | | | |
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Castor1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955455 | 4,531,325 - 4,535,217 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955455 | 4,530,842 - 4,535,358 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CASTOR1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 23 | 40,252,281 - 40,256,971 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 22 | 42,950,890 - 42,955,556 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 22 | 11,321,259 - 11,325,787 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 22 | 29,123,198 - 29,127,736 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 22 | 29,123,198 - 29,127,736 (-) | Ensembl | panpan1.1 | | panPan2 | |
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CASTOR1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 26 | 23,439,472 - 23,443,950 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 26 | 23,439,475 - 23,443,955 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 26 | 23,310,655 - 23,315,133 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 26 | 23,823,438 - 23,827,916 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 26 | 23,823,438 - 23,827,802 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 26 | 23,525,122 - 23,529,600 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 26 | 23,787,956 - 23,792,434 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 26 | 23,848,310 - 23,852,788 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Castor1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CASTOR1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 14 | 47,261,911 - 47,266,996 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 47,261,905 - 47,266,729 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 50,300,851 - 50,305,678 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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CASTOR1 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 19 | 13,165,945 - 13,172,734 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 19 | 13,165,873 - 13,170,465 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666045 | 112,975,807 - 112,980,488 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Castor1 (Heterocephalus glaber - naked mole-rat) |
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