Arhgef19 (Rho guanine nucleotide exchange factor 19)

Gene: Arhgef19 (Rho guanine nucleotide exchange factor 19) Rattus norvegicus

Analyze

Symbol:

Arhgef19

Name:

Rho guanine nucleotide exchange factor 19

RGD ID:

1304766

Description:

Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of actin cytoskeleton organization. Predicted to act upstream of or within wound healing. Orthologous to human ARHGEF19 (Rho guanine nucleotide exchange factor 19); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC362648; Rho guanine nucleotide exchange factor (GEF) 19

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,818,840 - 158,837,196 (+)	NCBI		GRCr8
mRatBN7.2	5	153,536,038 - 153,554,203 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,536,013 - 153,554,203 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	156,225,060 - 156,243,226 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,998,343 - 158,016,509 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,987,537 - 158,005,703 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,754,954 - 159,773,699 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,755,535 - 159,773,699 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	163,471,143 - 163,494,854 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	160,091,794 - 160,109,955 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	160,105,466 - 160,120,135 (+)	NCBI
Celera	5	151,900,596 - 151,919,574 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cataract 6 multiple types (ISO)

chromosome 1p36 deletion syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

chlorohydrocarbon (EXP)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

fentin chloride (EXP)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

leflunomide (EXP)

medroxyprogesterone acetate (ISO)

methidathion (ISO)

methylmercury chloride (EXP)

N-nitrosodiethylamine (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (ISO)

paraquat (EXP)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

sinapic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triptonide (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of actin cytoskeleton organization (IBA,ISO)

wound healing (ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20643356

Genomics

Comparative Map Data

Arhgef19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,818,840 - 158,837,196 (+)	NCBI		GRCr8
mRatBN7.2	5	153,536,038 - 153,554,203 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,536,013 - 153,554,203 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	156,225,060 - 156,243,226 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,998,343 - 158,016,509 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,987,537 - 158,005,703 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,754,954 - 159,773,699 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,755,535 - 159,773,699 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	163,471,143 - 163,494,854 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	160,091,794 - 160,109,955 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	160,105,466 - 160,120,135 (+)	NCBI
Celera	5	151,900,596 - 151,919,574 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

ARHGEF19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	16,197,854 - 16,212,652 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	16,197,854 - 16,212,652 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	16,524,349 - 16,539,147 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	16,397,186 - 16,411,691 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	16,269,904 - 16,284,410	NCBI
Celera	1	15,004,527 - 15,018,992 (-)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	15,042,069 - 15,056,569 (-)	NCBI		HuRef
CHM1_1	1	16,323,212 - 16,337,699 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	15,639,202 - 15,653,982 (-)	NCBI		T2T-CHM13v2.0

Arhgef19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	140,966,916 - 140,985,226 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	140,966,810 - 140,984,875 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	141,239,605 - 141,257,915 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,239,499 - 141,257,564 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	140,798,799 - 140,813,477 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,514,960 - 140,529,638 (+)	NCBI		MGSCv36	mm8
Celera	4	143,051,066 - 143,065,764 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	73.53	NCBI

Arhgef19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	2,077,806 - 2,088,880 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955527	2,073,009 - 2,087,291 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARHGEF19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	210,704,388 - 210,723,902 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	209,957,569 - 209,972,560 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	15,334,564 - 15,354,061 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	16,327,135 - 16,342,004 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	16,327,135 - 16,342,009 (-)	Ensembl	panpan1.1		panPan2

ARHGEF19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,484,068 - 81,499,961 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,486,146 - 81,499,584 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	78,016,450 - 78,036,107 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	82,126,388 - 82,146,073 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	82,132,250 - 82,146,085 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	78,879,368 - 78,899,043 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	79,896,590 - 79,916,272 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	80,964,447 - 80,984,130 (+)	NCBI		UU_Cfam_GSD_1.0

Arhgef19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	37,881,800 - 37,897,803 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	3,706,100 - 3,719,641 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	3,706,584 - 3,716,010 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGEF19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	75,317,823 - 75,335,270 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	75,317,811 - 75,335,292 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	69,633,523 - 69,650,991 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGEF19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	116,088,130 - 116,107,499 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	116,096,423 - 116,107,884 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	19,583,206 - 19,602,766 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgef19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	2,325,151 - 2,348,631 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	2,325,151 - 2,339,161 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arhgef19
82 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	425
Count of miRNA genes:	240
Interacting mature miRNAs:	273
Transcripts:	ENSRNOT00000036739, ENSRNOT00000067574
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat
2302369	Scl60	Serum cholesterol level QTL 60	3.13		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	143608201	161165651	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	143799107	158428037	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	144358090	157869054	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	144377876	161317411	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	151006154	161165494	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	151113452	164465185	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat

Markers in Region

RH132654

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	153,553,483 - 153,553,702 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	159,772,980 - 159,773,198	NCBI	Rnor6.0
Rnor_5.0	5	163,494,135 - 163,494,353	UniSTS	Rnor5.0
Celera	5	151,918,855 - 151,919,073	UniSTS
RH 3.4 Map	5	1052.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			11	11		11				10	3
Low	3	30	22	11	6	11	1	1	74	25	31	11	1
Below cutoff		13	24	19	12	19	6	8			5		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000067574 ⟹ ENSRNOP00000061876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	153,536,038 - 153,554,203 (+)	Ensembl
Rnor_6.0 Ensembl	5	159,755,535 - 159,773,699 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096539 ⟹ ENSRNOP00000093983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	153,536,013 - 153,554,203 (+)	Ensembl

RefSeq Acc Id:

NM_001108692 ⟹ NP_001102162

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,819,032 - 158,837,196 (+)	NCBI
mRatBN7.2	5	153,536,038 - 153,554,203 (+)	NCBI
Rnor_6.0	5	159,755,535 - 159,773,699 (+)	NCBI
Rnor_5.0	5	163,471,143 - 163,494,854 (+)	NCBI
RGSC_v3.4	5	160,091,794 - 160,109,955 (+)	RGD
Celera	5	151,900,596 - 151,919,574 (+)	RGD

Sequence:

show sequence

GAGCGTGAGCCTGGATGGGGTGAGGCTCTGTCTACAGTGGAAGAACCTAGCTGGAACCGCAGGA
AGCTGAGTCTGTTTAGTACACAGCTGATCAGAGTCGGCTGGGTTGAAGCCGCAGGACCAACTTC
TAAGGGAGGGAAGGGCAGGAGTGCAGAGCCCGGAGTCCACATCCGAGACCCCTAAGTCAAAGAC
ATTTCAACTACCCTCAACTCACCCTCAACTACTGGAAAAATGCTGGCCACGCATCTGGCTTCGT
CATCCCCTTGGAGTTCCTTCTGATCTCCCTGCCTTTGGCAGCCTGGCTCCAGTGGAATGTGCCC
GCTGTGGTACCTACCAAGTTCAAGGAGAGGTCCTGGCGGTCCACCAAGACGCGCTGCTTTAGAG
TCGGTTCCTAAGCTGTTGTCTCTAAGGCCGCCATTTCTTTGGGTCTCCCTCTTATTTCTGCCAG
ACTGGGCACTGCCCCTTTGGCCCCAGGGGCCTCTGCAGGGGTCCTCGCTGCCCAGGCTGTCCAC
AGCACAGCCAGGCAAGTGCCCGGGAGGGTGGCAGAGGAAAGGAGGAATGGACTGTGGACCACCT
GCAACCCTCCAGCCTCACCTGGCTGGACCACCTGGCACTGCCCGTCGCCCAGTAGCCGTGTGCC
AGCAAGAGAGCCTGTCCTTTGTGGAGCTGCCCACCCTGCACCCTCCAAGCCCAGTGTGTGTGGA
CCTCTTTCCCATTACTCCAGAGGAGCTACAAGCCCCTGGTAGCCGCTGGTCCCTGGCGACCCCT
GCCCCTCTCCAAGGACTGTTATGGCCGACATCCTCAGGAGGCCCAGATACCCATATCTCCACCA
CTGGAGGAATGAGGCCCAGCAGGGCTGGCAGCTGGCCTCACTGTCCTGGTGCCCAGCCCCCAAC
TCTGGTGGGACCCTGGAGTTCTCAGCATATGCAGCCCCAACGAAGGGCCAGCCACGGTGGCTCA
GAGAAGTCAGCCTGGCGCAAGATGCAGGTGTATCATAACGAAGAGGCCACAGGCGGCACAGAGC
CCCCCATGGGCCTTCTGGAGACTGGCCAGGCTGTTCAAGGGCAGGCTCTGTGTGCGCAAGAGCC
CCGGCCACAGGAACTTTCTGGGAACACCAGAGGGGGCCTTGAGGCACAGGAGAGAAGACGTTTC
TCGGCCTCAGAGCTGATGACTAGGCTGCATTCTTCTCTCCGTTTGGGGCGCAGCACGGCCCCTA
GAGCTCTGACCTCGGGCTCAGGTGCTGGAGTCATCCGGGAAGGGAAACTGCCCGGGAGGGAACC
CCGAAGAGCCGAGACGAGGATGGACAGTGTGTCCCTGCCAGCACCCGTCGATCTAAATGAGGTC
CAGGGTGGTCTGGTGGAGCCCAGGTTGGACACGAACGACAAGCCGACTCAAGATACCAACAGTG
CCACTGAGCGACGCCAGTCCCGTTTCCTCCTTAACTCTGTCCTCTACCAGGAGTACAGCGACGT
GGCCAGCGCGCGCGAATTGCGGCGGCAGCAGCGCGAGGAGGAGGGCCCCGGGGACGGGGCGGAG
GGCGCGGAGGAGGGGCCCGGGCCACCGCGCGCCAACCTCTCCCCGAGCAGCTCTTTCCGCGCGC
AGCGCTCGACGCGAGGCTCCACCTTCTCGCTGTGGCAGGACATCCCCGACGTGCGCGGCAGCGG
CGTCCTGGCCACGCTGAGCCTGCGCGACTGCAAACTGCAGGAGGCCAAATTTGAGCTGATTACC
TCGGAGGCCTCCTACATCCATAGCCTGTCGGTGGCCGTGGGTCACTTCTTAGGTTCCGTGGAGC
TGAGCGAGTGTCTGGGGACTCAGGACAAACAGTGGCTATTTTCCAAACTCCCCGAGGTCAAGAG
CACCAGTGAGAGATTTCTTCACGACCTGGAACAGCGTCTGGAGGCCGACGTGCTGCGCTTCAGC
GTCTGTGATGTGGTTCTGCACCACTGCCCCGCCTTCCGCCGGGTCTACCTGCCCTACGTCACCA
ACCAGGCCTATCAGGAGCGCACCTACCAGCGCCTGCTCCTAGAGAACCCCAAGTTCCCCGGCAT
CCTGGCTCGCTTAGAGGAGTCTCCTGTGTGCCAGCGGCTGCCTCTCACCTCATTCCTCATCCTA
CCGTTCCAGAGGGTCACCCGCCTCAAGATGCTGGTGGAGAACATCTTGAAGCGCACGACACCGG
GCTCCCAAGATGAGGACATGGCTACCAAGGCCTTCAGTGCACTAAAGGAGCTGGTGCAGGAATG
CAACGCAAGCGTGCAGTCCATGAAGAGGACCGAGGAGCTCATTCACCTGAGTAAGAAGATCCAC
TTCGAGGGCAAGATCTTCCCGCTGATCTCACAGGCCCGCTGGCTGGTACGGCACGGGGAGCTGG
TGGAGCTGGCCCCGCTGCCCGCCGCACCACCAGCCAAGCTGAAGCTGTCCAGCAAGGCTGTGTA
CCTTCACCTCTTCAATGACTGCCTGCTGCTGTCCCGGAGGAAGGAGCTCGGGAAGTTTGCCGTA
TTTGTTCATGCCAACATGGCTGAGCTACAGGTTCGAGACCTCAGCCTGAAGCTCCAGGGCATCC
CCGGCCATGTATTCCTGCTCAGGCTGCTGCATGGGCAGCGCGCCAGGCACCAGCTGCTGCTGAG
GGCACGGACAGAAAGCGAGAAGCAACGGTGGATTTCGGCCTTGCGTCCATCCAGCCCCCAGGAA
GACAAGGAGATCACTTGTGATGGGGAAGACCGCCCCCAGGTCCAGTGTGTGAGGACTTACAAGG
CCCTGCAGCCCGATGAACTGACCTTGGAGAAAACAGACATCCTAGCAGTGAAGACTAGGACCAG
CGATGGCTGGCTGGAGGGTGTGCGACTGGCCGATGGTGAGAAGGGGTGGGTGCCTCAGGCCCAC
GTGGAGGAGATCAGCAGCCTCAGCGCTCGACTGCGTAACCTCCGGGAGTACAAGAGGGTCTCCA
ACGTCAGCAGCAAGCTGGGGGACCCGCCCGCCTGATGCTCCGCTGGGGCCACTCTGGTGCTGGT
GGGCTTCTGTGTGTCTGAGGGCCGCAGGGTGGCAACGGTTCTGTAAATACACTCTGGCTGCCTC
TGCTCAGTCTGAGCGGGGCGGGCCTTCTCATGGGCTGCCCCATCAGGAGGGCACTGGTTGTTCC
TGCTGTCACTCGTCCCAAGGGCAGAGGGGCTGCCCCAACCTGCTACTTTCCCCTCCAAGTAGCA
AGTGTCAGATCCAAGCAGGCTTGAATATTAAAGTGACTCCGTGAGTTTCTGTAGTTGCCTCTTG
TGGCCTGTGCCAAGAAAGCACCACCAGCTGGGGGGTAGCCTTGAAACTATTAAAGCATAGCTCA
GAGGCCAGGCTCTCAAATCGGCCTCCTGGGCTGGGCTCCAGGTGGAGGTGATGCTGGGCCCCAT
CTGGGTCTCAGGAGAAAATCGCTTGTTGCCTCTGTGTACTTGGTGGTTGCCAGTGAGCTGCACT
TGCAGACAAATCCCAGTCCTACTGTGTGTCCTCTGTCTGCCCGGGACTGTGAGCCTATGGCTTC
ATTTGGAGTCTCCCCCACCCACCCTCAACCATCTCCCCATCACAGTCCTGGAAAAAACATCGAC
AAACATACTTCTTCCGTGTTTTCTTGTTTTGTTTTGCTTATTTGTTTAAAAACCTTTTTAAATG

hide sequence

RefSeq Acc Id:

XM_008764270 ⟹ XP_008762492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,818,840 - 158,837,139 (+)	NCBI
mRatBN7.2	5	153,536,167 - 153,554,146 (+)	NCBI
Rnor_6.0	5	159,754,954 - 159,773,642 (+)	NCBI

Sequence:

show sequence

ATGAGGGTTGAACGATGCGCTGATCTATGGGGACAGCAGTATGTCGTTAGGAGTCGATGTATTG
CTACGAGGAGCATATATTTACACCGGGATAGGGAATGAGATGTGTAGGATTGGTCCCTGAAGGC
CGTCCCTCCAGCTGCTGGCCACGCCCCCGGTACCAGTAAGAACTCACACAGCCAGCTGAGTGGA
TTTGCCAGCCTCCCGCTGGTGCCTGTGCCCTTCACCTGGCTCTGATCCAGAGCAACTACACACA
CACACACCCTGCAGGTGGAAGACCCACTAGGCACGGAGGAGGGTGGGGAGCGACTGTAGGGACA
CTGTGCTAAACCTGGGTGAGACCAGACCTGCCTGGGAGAGGGCAGTGTGCTAAGTCCGGGAGGG
GTGAAGCATGCCCCGGGGTGCAGAGCGTGCCTGGGAGGGCCAAGTGCTAAAGCCTAGGTAGGGC
GGGGCCTGCCTTGGAAGGGTGCTGAGCCTAGAAGGCGGGGTCTGAAGGGGGCGGGGATGCTGAG
TCTGGAATAGGGGGTAGGGGCTGGGTGATGAGCCTGAGAGGGGAGGAGGTGCTGAGCGTGGAAG
AGGAGGAGCGTGAGCCTGGATGGGGTGAGGCTCTGTCTACAGTGGAAGAACCTAGCTGGAACCG
CAGGAAGCTGAGTCTGTTTAGTACACAGCTGATCAGAGTCGGCTGGGTTGAAGCCGCAGGACCA
ACTTCTAAGGGAGGGAAGGGCAGGAGTGCAGAGCCCGGAGTCCACATCCGAGACCCCTAAGTCA
AAGACATTTCAACTACCCTCAACTCACCCTCAACTACTGGAAAAATGCTGGCCACGCATCTGGC
TTCGTCATCCCCTTGGAGTTCCTTCTGATCTCCCTGCCTTTGGCAGCCTGGCTCCAGTGGAATG
TGCCCGCTGTGGTACCTACCAAGTTCAAGGAGAGGTCCTGGCGGTCCACCAAGACGCGCTGCTT
TAGGCCCGGGAGGGTGGCAGAGGAAAGGAGGAATGGACTGTGGACCACCTGCAACCCTCCAGCC
TCACCTGGCTGGACCACCTGGCACTGCCCGTCGCCCAGTAGCCGTGTGCCAGCAAGAGAGCCTG
TCCTTTGTGGAGCTGCCCACCCTGCACCCTCCAAGCCCAGTGTGTGTGGACCTCTTTCCCATTA
CTCCAGAGGAGCTACAAGCCCCTGGTAGCCGCTGGTCCCTGGCGACCCCTGCCCCTCTCCAAGG
ACTGTTATGGCCGACATCCTCAGGAGGCCCAGATACCCATATCTCCACCACTGGAGGAATGAGG
CCCAGCAGGGCTGGCAGCTGGCCTCACTGTCCTGGTGCCCAGCCCCCAACTCTGGTGGGACCCT
GGAGTTCTCAGCATATGCAGCCCCAACGAAGGGCCAGCCACGGTGGCTCAGAGAAGTCAGCCTG
GCGCAAGATGCAGGTGTATCATAACGAAGAGGCCACAGGCGGCACAGAGCCCCCCATGGGCCTT
CTGGAGACTGGCCAGGCTGTTCAAGGGCAGGCTCTGTGTGCGCAAGAGCCCCGGCCACAGGAAC
TTTCTGGGAACACCAGAGGGGGCCTTGAGGCACAGGAGAGAAGACGTTTCTCGGCCTCAGAGCT
GATGACTAGGCTGCATTCTTCTCTCCGTTTGGGGCGCAGCACGGCCCCTAGAGCTCTGACCTCG
GGCTCAGGTGCTGGAGTCATCCGGGAAGGGAAACTGCCCGGGAGGGAACCCCGAAGAGCCGAGA
CGAGGATGGACAGTGTGTCCCTGCCAGCACCCGTCGATCTAAATGAGGTCCAGGGTGGTCTGGT
GGAGCCCAGGTTGGACACGAACGACAAGCCGACTCAAGATACCAACAGTGCCACTGAGCGACGC
CAGTCCCGTTTCCTCCTTAACTCTGTCCTCTACCAGGAGTACAGCGACGTGGCCAGCGCGCGCG
AATTGCGGCGGCAGCAGCGCGAGGAGGAGGGCCCCGGGGACGGGGCGGAGGGCGCGGAGGAGGG
GCCCGGGCCACCGCGCGCCAACCTCTCCCCGAGCAGCTCTTTCCGCGCGCAGCGCTCGACGCGA
GGCTCCACCTTCTCGCTGTGGCAGGACATCCCCGACGTGCGCGGCAGCGGCGTCCTGGCCACGC
TGAGCCTGCGCGACTGCAAACTGCAGGAGGCCAAATTTGAGCTGATTACCTCGGAGGCCTCCTA
CATCCATAGCCTGTCGGTGGCCGTGGGTCACTTCTTAGGTTCCGTGGAGCTGAGCGAGTGTCTG
GGGACTCAGGACAAACAGTGGCTATTTTCCAAACTCCCCGAGGTCAAGAGCACCAGTGAGAGAT
TTCTTCACGACCTGGAACAGCGTCTGGAGGCCGACGTGCTGCGCTTCAGCGTCTGTGATGTGGT
TCTGCACCACTGCCCCGCCTTCCGCCGGGTCTACCTGCCCTACGTCACCAACCAGGCCTATCAG
GAGCGCACCTACCAGCGCCTGCTCCTAGAGAACCCCAAGTTCCCCGGCATCCTGGCTCGCTTAG
AGGAGTCTCCTGTGTGCCAGCGGCTGCCTCTCACCTCATTCCTCATCCTACCGTTCCAGAGGGT
CACCCGCCTCAAGATGCTGGTGGAGAACATCTTGAAGCGCACGACACCGGGCTCCCAAGATGAG
GACATGGCTACCAAGGCCTTCAGTGCACTAAAGGAGCTGGTGCAGGAATGCAACGCAAGCGTGC
AGTCCATGAAGAGGACCGAGGAGCTCATTCACCTGAGTAAGAAGATCCACTTCGAGGGCAAGAT
CTTCCCGCTGATCTCACAGGCCCGCTGGCTGGTACGGCACGGGGAGCTGGTGGAGCTGGCCCCG
CTGCCCGCCGCACCACCAGCCAAGCTGAAGCTGTCCAGCAAGGCTGTGTACCTTCACCTCTTCA
ATGACTGCCTGCTGCTGTCCCGGAGGAAGGAGCTCGGGAAGTTTGCCGTATTTGTTCATGCCAA
CATGGCTGAGCTACAGGTTCGAGACCTCAGCCTGAAGCTCCAGGGCATCCCCGGCCATGTATTC
CTGCTCAGGCTGCTGCATGGGCAGCGCGCCAGGCACCAGCTGCTGCTGAGGGCACGGACAGAAA
GCGAGAAGCAACGGTGGATTTCGGCCTTGCGTCCATCCAGCCCCCAGGAAGACAAGGAGATCAC
TTGTGATGGGGAAGACCGCCCCCAGGTCCAGTGTGTGAGGACTTACAAGGCCCTGCAGCCCGAT
GAACTGACCTTGGAGAAAACAGACATCCTAGCAGTGAAGACTAGGACCAGCGATGGCTGGCTGG
AGGGTGTGCGACTGGCCGATGGTGAGAAGGGGTGGGTGCCTCAGGCCCACGTGGAGGAGATCAG
CAGCCTCAGCGCTCGACTGCGTAACCTCCGGGAGTACAAGAGGGTCTCCAACGTCAGCAGCAAG
CTGGGGGACCCGCCCGCCTGATGCTCCGCTGGGGCCACTCTGGTGCTGGTGGGCTTCTGTGTGT
CTGAGGGCCGCAGGGTGGCAACGGTTCTGTAAATACACTCTGGCTGCCTCTGCTCAGTCTGAGC
GGGGCGGGCCTTCTCATGGGCTGCCCCATCAGGAGGGCACTGGTTGTTCCTGCTGTCACTCGTC
CCAAGGGCAGAGGGGCTGCCCCAACCTGCTACTTTCCCCTCCAAGTAGCAAGTGTCAGATCCAA
GCAGGCTTGAATATTAAAGTGACTCCGTGAGTTTCTGTAGTTGCCTCTTGTGGCCTGTGCCAAG
AAAGCACCACCAGCTGGGGGGTAGCCTTGAAACTATTAAAGCATAGCTCAGAGGCCAGGCTCTC
AAATCGGCCTCCTGGGCTGGGCTCCAGGTGGAGGTGATGCTGGGCCCCATCTGGGTCTCAGGAG
AAAATCGCTTGTTGCCTCTGTGTACTTGGTGGTTGCCAGTGAGCTGCACTTGCAGACAAATCCC
AGTCCTACTGTGTGTCCTCTGTCTGCCCGGGACTGTGAGCCTATGGCTTCATTTGGAGTCTCCC
CCACCCACCCTCAACCATCTCCCCATCACAGTCCTGGAAAAAACATCGACAAACATA

hide sequence

RefSeq Acc Id:

XM_008764272 ⟹ XP_008762494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,822,158 - 158,837,139 (+)	NCBI
mRatBN7.2	5	153,539,175 - 153,554,146 (+)	NCBI
Rnor_6.0	5	159,757,802 - 159,773,642 (+)	NCBI

Sequence:

show sequence

TATTTTTTGTGTATGTGTATTTTGCCTGCACATCTATAAGCATATGTACCACATACCAGGAGAA
GGTGTCAGATCCCCCTGACACTGGATTTACACATGGTTGTGAGCTGCCGTTTGGGTACCGGGGG
ACCGAGTCTGGCTCTTCTGCAAAAGCAGCAAGTGTTTCCTAACCACTGAGCCATCTCTCCAGCC
CCCTGGTCATCGTTCTTGTTAATGTAAAAATGCCCCTAGAACCTTGGCTTCACCATCTGGAGGA
GGTGAGGGGACCTCGCAGATGGGAGAGCGCTCGTGTCTAGGGGCACAAGCCTCATGTACTCATC
TGCTAAATGGTAGACCGCACAGTGTGAGCTTCAGAGGGTGGTGATGCACAGTAGGTGGACACAT
GCACTCGAAGTGCTTTGCACATAGGAAATGTACGGGCTTTTAACACTGTGAGCTTCATCCTTGC
ACCCACCCTCCATATTCCTGGGAGCTGCATCTGCTTGCCAATTGCGAGGTGCTCCCGCGCATGG
CAGGTGGCACTGGGAGGAAGCAGCTTTTCCCGACGGGCTCTGCAAAGTCGTCTGCTACCCTGAT
GCCCCTACAGAGGCTTCCTTGACCTCAGCTGTGCTGTTGACCTTGCTAAAACTCCCTGTGGGCT
GCTCTCTACGTGAAGGTTTCCCCGGGGACCCAGCTGCTGGAGACCTAAGCGCTGGTCATTCCAG
CAGGAAAGGGACATTGGTGGGGAGTGGCCACGCTGTCGCCGAGACAGATCGATAACTTTCAAGA
CTGACCTCTGTCCCCCCCAGAGCCATGCAGCTGAGTGCTCCTACTTTACGGATGTGGTTCACGG
GGTGGTGGGGTGGGGGAGGGGAGGTCTCAAGAGCCCTGAGAAGGGGTTCTAGATTTGGAAATTC
CTCTGCAAAGCTTCCAGGATGTCCTCCACTCCCACAAAGTCCCCGCCCCTACCTAGGCTTTGGG
AAGCTCCAGAGAGAGGTGGCCCACCTTCCAGGAGCAGAACCCAGCTAACCCCATCTTTAGGCAG
CTGTCTGGGGTCCCTCTGAGCCTCTGCAAGGCATAGGACTCCCATTGTTCCAGCCCCCTCTTGT
ACCTGACTGGCCAAACCGGTTCTGGGGAAGGGGGGCGGGGAGCAGGCACGTTGAGACAGCCGCC
TGCCTCTGCAAGGCTCCCGCACCCTCGCCTCCCCCCTCCCTGCCCCACACAATACCCAAGAGCT
TGCATTGCCCAGCATTGGAGCCATGCTGACATAGCCCTCTGAGGACTTGGCCACAACCCCATTG
CCCCCAGGGTGGCCTGGAGCCCTGGACTGTACCAGCATCTTGACGGAGGAGCTCCCCGGCTGAG
GCCCGGGAGGGTGGCAGAGGAAAGGAGGAATGGACTGTGGACCACCTGCAACCCTCCAGCCTCA
CCTGGCTGGACCACCTGGCACTGCCCGTCGCCCAGTAGCCGTGTGCCAGCAAGAGAGCCTGTCC
TTTGTGGAGCTGCCCACCCTGCACCCTCCAAGCCCAGTGTGTGTGGACCTCTTTCCCATTACTC
CAGAGGAGCTACAAGCCCCTGGTAGCCGCTGGTCCCTGGCGACCCCTGCCCCTCTCCAAGGACT
GTTATGGCCGACATCCTCAGGAGGCCCAGATACCCATATCTCCACCACTGGAGGAATGAGGCCC
AGCAGGGCTGGCAGCTGGCCTCACTGTCCTGGTGCCCAGCCCCCAACTCTGGTGGGACCCTGGA
GTTCTCAGCATATGCAGCCCCAACGAAGGGCCAGCCACGGTGGCTCAGAGAAGTCAGCCTGGCG
CAAGATGCAGGTGTATCATAACGAAGAGGCCACAGGCGGCACAGAGCCCCCCATGGGCCTTCTG
GAGACTGGCCAGGCTGTTCAAGGGCAGGCTCTGTGTGCGCAAGAGCCCCGGCCACAGGAACTTT
CTGGGAACACCAGAGGGGGCCTTGAGGCACAGGAGAGAAGACGTTTCTCGGCCTCAGAGCTGAT
GACTAGGCTGCATTCTTCTCTCCGTTTGGGGCGCAGCACGGCCCCTAGAGCTCTGACCTCGGGC
TCAGGTGCTGGAGTCATCCGGGAAGGGAAACTGCCCGGGAGGGAACCCCGAAGAGCCGAGACGA
GGATGGACAGTGTGTCCCTGCCAGCACCCGTCGATCTAAATGAGGTCCAGGGTGGTCTGGTGGA
GCCCAGGTTGGACACGAACGACAAGCCGACTCAAGATACCAACAGTGCCACTGAGCGACGCCAG
TCCCGTTTCCTCCTTAACTCTGTCCTCTACCAGGAGTACAGCGACGTGGCCAGCGCGCGCGAAT
TGCGGCGGCAGCAGCGCGAGGAGGAGGGCCCCGGGGACGGGGCGGAGGGCGCGGAGGAGGGGCC
CGGGCCACCGCGCGCCAACCTCTCCCCGAGCAGCTCTTTCCGCGCGCAGCGCTCGACGCGAGGC
TCCACCTTCTCGCTGTGGCAGGACATCCCCGACGTGCGCGGCAGCGGCGTCCTGGCCACGCTGA
GCCTGCGCGACTGCAAACTGCAGGAGGCCAAATTTGAGCTGATTACCTCGGAGGCCTCCTACAT
CCATAGCCTGTCGGTGGCCGTGGGTCACTTCTTAGGTTCCGTGGAGCTGAGCGAGTGTCTGGGG
ACTCAGGACAAACAGTGGCTATTTTCCAAACTCCCCGAGGTCAAGAGCACCAGTGAGAGATTTC
TTCACGACCTGGAACAGCGTCTGGAGGCCGACGTGCTGCGCTTCAGCGTCTGTGATGTGGTTCT
GCACCACTGCCCCGCCTTCCGCCGGGTCTACCTGCCCTACGTCACCAACCAGGCCTATCAGGAG
CGCACCTACCAGCGCCTGCTCCTAGAGAACCCCAAGTTCCCCGGCATCCTGGCTCGCTTAGAGG
AGTCTCCTGTGTGCCAGCGGCTGCCTCTCACCTCATTCCTCATCCTACCGTTCCAGAGGGTCAC
CCGCCTCAAGATGCTGGTGGAGAACATCTTGAAGCGCACGACACCGGGCTCCCAAGATGAGGAC
ATGGCTACCAAGGCCTTCAGTGCACTAAAGGAGCTGGTGCAGGAATGCAACGCAAGCGTGCAGT
CCATGAAGAGGACCGAGGAGCTCATTCACCTGAGTAAGAAGATCCACTTCGAGGGCAAGATCTT
CCCGCTGATCTCACAGGCCCGCTGGCTGGTACGGCACGGGGAGCTGGTGGAGCTGGCCCCGCTG
CCCGCCGCACCACCAGCCAAGCTGAAGCTGTCCAGCAAGGCTGTGTACCTTCACCTCTTCAATG
ACTGCCTGCTGCTGTCCCGGAGGAAGGAGCTCGGGAAGTTTGCCGTATTTGTTCATGCCAACAT
GGCTGAGCTACAGGTTCGAGACCTCAGCCTGAAGCTCCAGGGCATCCCCGGCCATGTATTCCTG
CTCAGGCTGCTGCATGGGCAGCGCGCCAGGCACCAGCTGCTGCTGAGGGCACGGACAGAAAGCG
AGAAGCAACGGTGGATTTCGGCCTTGCGTCCATCCAGCCCCCAGGAAGACAAGGAGATCACTTG
TGATGGGGAAGACCGCCCCCAGGTCCAGTGTGTGAGGACTTACAAGGCCCTGCAGCCCGATGAA
CTGACCTTGGAGAAAACAGACATCCTAGCAGTGAAGACTAGGACCAGCGATGGCTGGCTGGAGG
GTGTGCGACTGGCCGATGGTGAGAAGGGGTGGGTGCCTCAGGCCCACGTGGAGGAGATCAGCAG
CCTCAGCGCTCGACTGCGTAACCTCCGGGAGTACAAGAGGGTCTCCAACGTCAGCAGCAAGCTG
GGGGACCCGCCCGCCTGATGCTCCGCTGGGGCCACTCTGGTGCTGGTGGGCTTCTGTGTGTCTG
AGGGCCGCAGGGTGGCAACGGTTCTGTAAATACACTCTGGCTGCCTCTGCTCAGTCTGAGCGGG
GCGGGCCTTCTCATGGGCTGCCCCATCAGGAGGGCACTGGTTGTTCCTGCTGTCACTCGTCCCA
AGGGCAGAGGGGCTGCCCCAACCTGCTACTTTCCCCTCCAAGTAGCAAGTGTCAGATCCAAGCA
GGCTTGAATATTAAAGTGACTCCGTGAGTTTCTGTAGTTGCCTCTTGTGGCCTGTGCCAAGAAA
GCACCACCAGCTGGGGGGTAGCCTTGAAACTATTAAAGCATAGCTCAGAGGCCAGGCTCTCAAA
TCGGCCTCCTGGGCTGGGCTCCAGGTGGAGGTGATGCTGGGCCCCATCTGGGTCTCAGGAGAAA
ATCGCTTGTTGCCTCTGTGTACTTGGTGGTTGCCAGTGAGCTGCACTTGCAGACAAATCCCAGT
CCTACTGTGTGTCCTCTGTCTGCCCGGGACTGTGAGCCTATGGCTTCATTTGGAGTCTCCCCCA
CCCACCCTCAACCATCTCCCCATCACAGTCCTGGAAAAAACATCGACAAACATA

hide sequence

RefSeq Acc Id:

XM_017593525 ⟹ XP_017449014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,824,876 - 158,837,139 (+)	NCBI
mRatBN7.2	5	153,542,043 - 153,554,146 (+)	NCBI
Rnor_6.0	5	159,761,312 - 159,773,642 (+)	NCBI

Sequence:

show sequence

AGAGGGCCTGGGGCAGAAGCTTAAGGGTCTTGGACCTCTGGGCTCATCATCCTGCCCTGGGGTG
CTGGCACACTGCCTGGGGGTGGCGTCCTGCCCGGAAACGGCCCATTCCGCCTGGCTTGAGCTAG
TGTCTGGGAGCTGGAATGGGGAGAAGCCCCTCAGTCATCCCAAACTGGGGATTGGGCATCTCTC
TGCTCTTTCCTGGGAGGGACTAATCTGGGTGGTGGCCTGCCTGCCAGTCTGTGACCCTCCCAGC
CAGCTTGGCAAGGCTGTAGGCATCACTCAGCATGAAGGCCTCAAGTCTGGGTATGGAAGGGGGT
GGATAACTAACCTCAGAACAAGACACTGGGGGCCGTGTGTATCTACATCCTGGCCCGGGAGGGT
GGCAGAGGAAAGGAGGAATGGACTGTGGACCACCTGCAACCCTCCAGCCTCACCTGGCTGGACC
ACCTGGCACTGCCCGTCGCCCAGTAGCCGTGTGCCAGCAAGAGAGCCTGTCCTTTGTGGAGCTG
CCCACCCTGCACCCTCCAAGCCCAGTGTGTGTGGACCTCTTTCCCATTACTCCAGAGGAGCTAC
AAGCCCCTGGTAGCCGCTGGTCCCTGGCGACCCCTGCCCCTCTCCAAGGACTGTTATGGCCGAC
ATCCTCAGGAGGCCCAGATACCCATATCTCCACCACTGGAGGAATGAGGCCCAGCAGGGCTGGC
AGCTGGCCTCACTGTCCTGGTGCCCAGCCCCCAACTCTGGTGGGACCCTGGAGTTCTCAGCATA
TGCAGCCCCAACGAAGGGCCAGCCACGGTGGCTCAGAGAAGTCAGCCTGGCGCAAGATGCAGGT
GTATCATAACGAAGAGGCCACAGGCGGCACAGAGCCCCCCATGGGCCTTCTGGAGACTGGCCAG
GCTGTTCAAGGGCAGGCTCTGTGTGCGCAAGAGCCCCGGCCACAGGAACTTTCTGGGAACACCA
GAGGGGGCCTTGAGGCACAGGAGAGAAGACGTTTCTCGGCCTCAGAGCTGATGACTAGGCTGCA
TTCTTCTCTCCGTTTGGGGCGCAGCACGGCCCCTAGAGCTCTGACCTCGGGCTCAGGTGCTGGA
GTCATCCGGGAAGGGAAACTGCCCGGGAGGGAACCCCGAAGAGCCGAGACGAGGATGGACAGTG
TGTCCCTGCCAGCACCCGTCGATCTAAATGAGGTCCAGGGTGGTCTGGTGGAGCCCAGGTTGGA
CACGAACGACAAGCCGACTCAAGATACCAACAGTGCCACTGAGCGACGCCAGTCCCGTTTCCTC
CTTAACTCTGTCCTCTACCAGGAGTACAGCGACGTGGCCAGCGCGCGCGAATTGCGGCGGCAGC
AGCGCGAGGAGGAGGGCCCCGGGGACGGGGCGGAGGGCGCGGAGGAGGGGCCCGGGCCACCGCG
CGCCAACCTCTCCCCGAGCAGCTCTTTCCGCGCGCAGCGCTCGACGCGAGGCTCCACCTTCTCG
CTGTGGCAGGACATCCCCGACGTGCGCGGCAGCGGCGTCCTGGCCACGCTGAGCCTGCGCGACT
GCAAACTGCAGGAGGCCAAATTTGAGCTGATTACCTCGGAGGCCTCCTACATCCATAGCCTGTC
GGTGGCCGTGGGTCACTTCTTAGGTTCCGTGGAGCTGAGCGAGTGTCTGGGGACTCAGGACAAA
CAGTGGCTATTTTCCAAACTCCCCGAGGTCAAGAGCACCAGTGAGAGATTTCTTCACGACCTGG
AACAGCGTCTGGAGGCCGACGTGCTGCGCTTCAGCGTCTGTGATGTGGTTCTGCACCACTGCCC
CGCCTTCCGCCGGGTCTACCTGCCCTACGTCACCAACCAGGCCTATCAGGAGCGCACCTACCAG
CGCCTGCTCCTAGAGAACCCCAAGTTCCCCGGCATCCTGGCTCGCTTAGAGGAGTCTCCTGTGT
GCCAGCGGCTGCCTCTCACCTCATTCCTCATCCTACCGTTCCAGAGGGTCACCCGCCTCAAGAT
GCTGGTGGAGAACATCTTGAAGCGCACGACACCGGGCTCCCAAGATGAGGACATGGCTACCAAG
GCCTTCAGTGCACTAAAGGAGCTGGTGCAGGAATGCAACGCAAGCGTGCAGTCCATGAAGAGGA
CCGAGGAGCTCATTCACCTGAGTAAGAAGATCCACTTCGAGGGCAAGATCTTCCCGCTGATCTC
ACAGGCCCGCTGGCTGGTACGGCACGGGGAGCTGGTGGAGCTGGCCCCGCTGCCCGCCGCACCA
CCAGCCAAGCTGAAGCTGTCCAGCAAGGCTGTGTACCTTCACCTCTTCAATGACTGCCTGCTGC
TGTCCCGGAGGAAGGAGCTCGGGAAGTTTGCCGTATTTGTTCATGCCAACATGGCTGAGCTACA
GGTTCGAGACCTCAGCCTGAAGCTCCAGGGCATCCCCGGCCATGTATTCCTGCTCAGGCTGCTG
CATGGGCAGCGCGCCAGGCACCAGCTGCTGCTGAGGGCACGGACAGAAAGCGAGAAGCAACGGT
GGATTTCGGCCTTGCGTCCATCCAGCCCCCAGGAAGACAAGGAGATCACTTGTGATGGGGAAGA
CCGCCCCCAGGTCCAGTGTGTGAGGACTTACAAGGCCCTGCAGCCCGATGAACTGACCTTGGAG
AAAACAGACATCCTAGCAGTGAAGACTAGGACCAGCGATGGCTGGCTGGAGGGTGTGCGACTGG
CCGATGGTGAGAAGGGGTGGGTGCCTCAGGCCCACGTGGAGGAGATCAGCAGCCTCAGCGCTCG
ACTGCGTAACCTCCGGGAGTACAAGAGGGTCTCCAACGTCAGCAGCAAGCTGGGGGACCCGCCC
GCCTGATGCTCCGCTGGGGCCACTCTGGTGCTGGTGGGCTTCTGTGTGTCTGAGGGCCGCAGGG
TGGCAACGGTTCTGTAAATACACTCTGGCTGCCTCTGCTCAGTCTGAGCGGGGCGGGCCTTCTC
ATGGGCTGCCCCATCAGGAGGGCACTGGTTGTTCCTGCTGTCACTCGTCCCAAGGGCAGAGGGG
CTGCCCCAACCTGCTACTTTCCCCTCCAAGTAGCAAGTGTCAGATCCAAGCAGGCTTGAATATT
AAAGTGACTCCGTGAGTTTCTGTAGTTGCCTCTTGTGGCCTGTGCCAAGAAAGCACCACCAGCT
GGGGGGTAGCCTTGAAACTATTAAAGCATAGCTCAGAGGCCAGGCTCTCAAATCGGCCTCCTGG
GCTGGGCTCCAGGTGGAGGTGATGCTGGGCCCCATCTGGGTCTCAGGAGAAAATCGCTTGTTGC
CTCTGTGTACTTGGTGGTTGCCAGTGAGCTGCACTTGCAGACAAATCCCAGTCCTACTGTGTGT
CCTCTGTCTGCCCGGGACTGTGAGCCTATGGCTTCATTTGGAGTCTCCCCCACCCACCCTCAAC
CATCTCCCCATCACAGTCCTGGAAAAAACATCGACAAACATA

hide sequence

RefSeq Acc Id:

XM_039110425 ⟹ XP_038966353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,824,628 - 158,837,139 (+)	NCBI
mRatBN7.2	5	153,541,658 - 153,554,146 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102162	(Get FASTA)	NCBI Sequence Viewer
	XP_008762492	(Get FASTA)	NCBI Sequence Viewer
	XP_008762494	(Get FASTA)	NCBI Sequence Viewer
	XP_017449014	(Get FASTA)	NCBI Sequence Viewer
	XP_038966353	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80974	(Get FASTA)	NCBI Sequence Viewer
	EDL80975	(Get FASTA)	NCBI Sequence Viewer
	EDL80976	(Get FASTA)	NCBI Sequence Viewer
	EDL80977	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061876
	ENSRNOP00000061876.3
	ENSRNOP00000093983
	ENSRNOP00000093983.1

RefSeq Acc Id:

NP_001102162 ⟸ NM_001108692

- UniProtKB:

D4A646 (UniProtKB/TrEMBL), A6ITS3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCPLWYLPSSRRGPGGPPRRAALESVPKLLSLRPPFLWVSLLFLPDWALPLWPQGPLQGSSLPR
LSTAQPGKCPGGWQRKGGMDCGPPATLQPHLAGPPGTARRPVAVCQQESLSFVELPTLHPPSPV
CVDLFPITPEELQAPGSRWSLATPAPLQGLLWPTSSGGPDTHISTTGGMRPSRAGSWPHCPGAQ
PPTLVGPWSSQHMQPQRRASHGGSEKSAWRKMQVYHNEEATGGTEPPMGLLETGQAVQGQALCA
QEPRPQELSGNTRGGLEAQERRRFSASELMTRLHSSLRLGRSTAPRALTSGSGAGVIREGKLPG
REPRRAETRMDSVSLPAPVDLNEVQGGLVEPRLDTNDKPTQDTNSATERRQSRFLLNSVLYQEY
SDVASARELRRQQREEEGPGDGAEGAEEGPGPPRANLSPSSSFRAQRSTRGSTFSLWQDIPDVR
GSGVLATLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSVELSECLGTQDKQWLFSKLPE
VKSTSERFLHDLEQRLEADVLRFSVCDVVLHHCPAFRRVYLPYVTNQAYQERTYQRLLLENPKF
PGILARLEESPVCQRLPLTSFLILPFQRVTRLKMLVENILKRTTPGSQDEDMATKAFSALKELV
QECNASVQSMKRTEELIHLSKKIHFEGKIFPLISQARWLVRHGELVELAPLPAAPPAKLKLSSK
AVYLHLFNDCLLLSRRKELGKFAVFVHANMAELQVRDLSLKLQGIPGHVFLLRLLHGQRARHQL
LLRARTESEKQRWISALRPSSPQEDKEITCDGEDRPQVQCVRTYKALQPDELTLEKTDILAVKT
RTSDGWLEGVRLADGEKGWVPQAHVEEISSLSARLRNLREYKRVSNVSSKLGDPPA

hide sequence

RefSeq Acc Id:	XP_008762492 ⟸ XM_008764270
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ALI5 (UniProtKB/TrEMBL), A6ITS4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCPLWYLPSSRRGPGGPPRRAALGPGGWQRKGGMDCGPPATLQPHLAGPPGTARRPVAVCQQES LSFVELPTLHPPSPVCVDLFPITPEELQAPGSRWSLATPAPLQGLLWPTSSGGPDTHISTTGGM RPSRAGSWPHCPGAQPPTLVGPWSSQHMQPQRRASHGGSEKSAWRKMQVYHNEEATGGTEPPMG LLETGQAVQGQALCAQEPRPQELSGNTRGGLEAQERRRFSASELMTRLHSSLRLGRSTAPRALT SGSGAGVIREGKLPGREPRRAETRMDSVSLPAPVDLNEVQGGLVEPRLDTNDKPTQDTNSATER RQSRFLLNSVLYQEYSDVASARELRRQQREEEGPGDGAEGAEEGPGPPRANLSPSSSFRAQRST RGSTFSLWQDIPDVRGSGVLATLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSVELSEC LGTQDKQWLFSKLPEVKSTSERFLHDLEQRLEADVLRFSVCDVVLHHCPAFRRVYLPYVTNQAY QERTYQRLLLENPKFPGILARLEESPVCQRLPLTSFLILPFQRVTRLKMLVENILKRTTPGSQD EDMATKAFSALKELVQECNASVQSMKRTEELIHLSKKIHFEGKIFPLISQARWLVRHGELVELA PLPAAPPAKLKLSSKAVYLHLFNDCLLLSRRKELGKFAVFVHANMAELQVRDLSLKLQGIPGHV FLLRLLHGQRARHQLLLRARTESEKQRWISALRPSSPQEDKEITCDGEDRPQVQCVRTYKALQP DELTLEKTDILAVKTRTSDGWLEGVRLADGEKGWVPQAHVEEISSLSARLRNLREYKRVSNVSS KLGDPPA hide sequence

RefSeq Acc Id:	XP_008762494 ⟸ XM_008764272
- Peptide Label:	isoform X2
- UniProtKB:	A6ITS5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDCGPPATLQPHLAGPPGTARRPVAVCQQESLSFVELPTLHPPSPVCVDLFPITPEELQAPGSR WSLATPAPLQGLLWPTSSGGPDTHISTTGGMRPSRAGSWPHCPGAQPPTLVGPWSSQHMQPQRR ASHGGSEKSAWRKMQVYHNEEATGGTEPPMGLLETGQAVQGQALCAQEPRPQELSGNTRGGLEA QERRRFSASELMTRLHSSLRLGRSTAPRALTSGSGAGVIREGKLPGREPRRAETRMDSVSLPAP VDLNEVQGGLVEPRLDTNDKPTQDTNSATERRQSRFLLNSVLYQEYSDVASARELRRQQREEEG PGDGAEGAEEGPGPPRANLSPSSSFRAQRSTRGSTFSLWQDIPDVRGSGVLATLSLRDCKLQEA KFELITSEASYIHSLSVAVGHFLGSVELSECLGTQDKQWLFSKLPEVKSTSERFLHDLEQRLEA DVLRFSVCDVVLHHCPAFRRVYLPYVTNQAYQERTYQRLLLENPKFPGILARLEESPVCQRLPL TSFLILPFQRVTRLKMLVENILKRTTPGSQDEDMATKAFSALKELVQECNASVQSMKRTEELIH LSKKIHFEGKIFPLISQARWLVRHGELVELAPLPAAPPAKLKLSSKAVYLHLFNDCLLLSRRKE LGKFAVFVHANMAELQVRDLSLKLQGIPGHVFLLRLLHGQRARHQLLLRARTESEKQRWISALR PSSPQEDKEITCDGEDRPQVQCVRTYKALQPDELTLEKTDILAVKTRTSDGWLEGVRLADGEKG WVPQAHVEEISSLSARLRNLREYKRVSNVSSKLGDPPA hide sequence

RefSeq Acc Id:	XP_017449014 ⟸ XM_017593525
- Peptide Label:	isoform X2
- UniProtKB:	A6ITS5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDCGPPATLQPHLAGPPGTARRPVAVCQQESLSFVELPTLHPPSPVCVDLFPITPEELQAPGSR WSLATPAPLQGLLWPTSSGGPDTHISTTGGMRPSRAGSWPHCPGAQPPTLVGPWSSQHMQPQRR ASHGGSEKSAWRKMQVYHNEEATGGTEPPMGLLETGQAVQGQALCAQEPRPQELSGNTRGGLEA QERRRFSASELMTRLHSSLRLGRSTAPRALTSGSGAGVIREGKLPGREPRRAETRMDSVSLPAP VDLNEVQGGLVEPRLDTNDKPTQDTNSATERRQSRFLLNSVLYQEYSDVASARELRRQQREEEG PGDGAEGAEEGPGPPRANLSPSSSFRAQRSTRGSTFSLWQDIPDVRGSGVLATLSLRDCKLQEA KFELITSEASYIHSLSVAVGHFLGSVELSECLGTQDKQWLFSKLPEVKSTSERFLHDLEQRLEA DVLRFSVCDVVLHHCPAFRRVYLPYVTNQAYQERTYQRLLLENPKFPGILARLEESPVCQRLPL TSFLILPFQRVTRLKMLVENILKRTTPGSQDEDMATKAFSALKELVQECNASVQSMKRTEELIH LSKKIHFEGKIFPLISQARWLVRHGELVELAPLPAAPPAKLKLSSKAVYLHLFNDCLLLSRRKE LGKFAVFVHANMAELQVRDLSLKLQGIPGHVFLLRLLHGQRARHQLLLRARTESEKQRWISALR PSSPQEDKEITCDGEDRPQVQCVRTYKALQPDELTLEKTDILAVKTRTSDGWLEGVRLADGEKG WVPQAHVEEISSLSARLRNLREYKRVSNVSSKLGDPPA hide sequence

RefSeq Acc Id:

ENSRNOP00000061876 ⟸ ENSRNOT00000067574

RefSeq Acc Id:	XP_038966353 ⟸ XM_039110425
- Peptide Label:	isoform X2
- UniProtKB:	A6ITS5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000093983 ⟸ ENSRNOT00000096539

Protein Domains

DH PH SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A646-F1-model_v2	AlphaFold	D4A646	1-888	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694222

Promoter ID:

EPDNEW_R4747

Type:

initiation region

Name:

Arhgef19_1

Description:

Rho guanine nucleotide exchange factor 19

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	159,755,576 - 159,755,636	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304766	AgrOrtholog
BioCyc Gene	G2FUF-39355	BioCyc
Ensembl Genes	ENSRNOG00000047967	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067574	ENTREZGENE
	ENSRNOT00000067574.4	UniProtKB/TrEMBL
	ENSRNOT00000096539.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.900.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	DBL_dom_sf	UniProtKB/TrEMBL
	DH-domain	UniProtKB/TrEMBL
	Ephexin-like	UniProtKB/TrEMBL
	PH/PTB_dom	UniProtKB/TrEMBL
	PH_domain	UniProtKB/TrEMBL
	PH_ephexin	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
KEGG Report	rno:362648	UniProtKB/TrEMBL
NCBI Gene	362648	ENTREZGENE
PANTHER	GUANINE NUCLEOTIDE EXCHANGE FACTOR	UniProtKB/TrEMBL
	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 19	UniProtKB/TrEMBL
Pfam	PF00169	UniProtKB/TrEMBL
	RhoGEF	UniProtKB/TrEMBL
	SH3_2	UniProtKB/TrEMBL
PhenoGen	Arhgef19	PhenoGen
PROSITE	DH_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000047967	RatGTEx
SMART	RhoGEF	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	DH-domain	UniProtKB/TrEMBL
	PH domain-like	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
UniProt	A0A8I6ALI5	ENTREZGENE, UniProtKB/TrEMBL
	A6ITS3	ENTREZGENE, UniProtKB/TrEMBL
	A6ITS4	ENTREZGENE, UniProtKB/TrEMBL
	A6ITS5	ENTREZGENE, UniProtKB/TrEMBL
	D4A646	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-19	Arhgef19	Rho guanine nucleotide exchange factor 19	Arhgef19	Rho guanine nucleotide exchange factor (GEF) 19	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Arhgef19	Rho guanine nucleotide exchange factor (GEF) 19	Arhgef19_predicted	Rho guanine nucleotide exchange factor (GEF) 19 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Arhgef19_predicted	Rho guanine nucleotide exchange factor (GEF) 19 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar