Coa8 (cytochrome c oxidase assembly factor 8) - Rat Genome Database

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Gene: Coa8 (cytochrome c oxidase assembly factor 8) Rattus norvegicus
Analyze
Symbol: Coa8
Name: cytochrome c oxidase assembly factor 8
RGD ID: 1304719
Description: Predicted to be involved in mitochondrial cytochrome c oxidase assembly; protein stabilization; and response to reactive oxygen species. Predicted to act upstream of or within intrinsic apoptotic signaling pathway. Predicted to be located in matrix side of mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex IV deficiency nuclear type 17. Orthologous to human COA8 (cytochrome c oxidase assembly factor 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: APOP-1; Apop1; Apopt1; apoptogenic 1; apoptogenic 1, mitochondrial; apoptogenic protein 1, mitochondrial; LOC299341; MGC124853; RGD1304719; similar to RIKEN cDNA 2810002N01; UPF0671 protein C14orf153 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,593,399 - 136,618,237 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,592,787 - 136,619,602 (+)EnsemblGRCr8
mRatBN7.26130,772,218 - 130,797,081 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,771,199 - 130,797,081 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,939,429 - 130,964,335 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06131,236,399 - 131,261,305 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,602,427 - 130,627,198 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06136,279,476 - 136,304,317 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.06136,185,772 - 136,210,936 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,279,496 - 136,304,095 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl6136,185,487 - 136,210,940 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,205,803 - 144,230,967 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46136,495,214 - 136,520,116 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6128,327,965 - 128,352,225 (+)NCBICelera
RGSC_v3.16136,501,406 - 136,526,300 (+)NCBI
Cytogenetic Map6q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16782708   PMID:18614015   PMID:18977203   PMID:25175347   PMID:30552096  


Genomics

Comparative Map Data
Coa8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86136,593,399 - 136,618,237 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6136,592,787 - 136,619,602 (+)EnsemblGRCr8
mRatBN7.26130,772,218 - 130,797,081 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,771,199 - 130,797,081 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,939,429 - 130,964,335 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06131,236,399 - 131,261,305 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06130,602,427 - 130,627,198 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06136,279,476 - 136,304,317 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.06136,185,772 - 136,210,936 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6136,279,496 - 136,304,095 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl6136,185,487 - 136,210,940 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,205,803 - 144,230,967 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46136,495,214 - 136,520,116 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6128,327,965 - 128,352,225 (+)NCBICelera
RGSC_v3.16136,501,406 - 136,526,300 (+)NCBI
Cytogenetic Map6q32NCBI
COA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814103,562,960 - 103,590,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14103,562,960 - 103,607,523 (+)Ensemblhg38GRCh38
GRCh3714104,029,297 - 104,057,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614103,099,084 - 103,128,277 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3414103,099,083 - 103,128,261NCBI
Celera1484,083,545 - 84,111,477 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1484,207,680 - 84,235,763 (+)NCBIHuRef
CHM1_114103,967,493 - 103,995,428 (+)NCBICHM1_1
T2T-CHM13v2.01497,799,005 - 97,826,938 (+)NCBIT2T-CHM13v2.0
Coa8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,679,394 - 111,721,491 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,679,695 - 111,721,487 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812111,713,268 - 111,755,057 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,713,261 - 111,755,053 (+)Ensemblmm10GRCm38
MGSCv3712112,951,480 - 112,993,266 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612112,161,079 - 112,181,999 (+)NCBIMGSCv36mm8
Celera12112,907,511 - 112,957,133 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.11NCBI
Apopt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555382,415,604 - 2,434,658 (+)Ensembl
ChiLan1.0NW_0049555382,415,781 - 2,432,742 (+)NCBIChiLan1.0ChiLan1.0
LOC100994669
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215104,722,238 - 104,750,615 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114103,938,718 - 103,985,710 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01484,189,323 - 84,217,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114104,000,696 - 104,027,230 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14104,000,692 - 104,027,230 (+)EnsemblpanPan2panpan1.1
COA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1871,324,271 - 71,357,468 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl871,318,244 - 71,357,466 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha870,836,065 - 70,868,225 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0871,600,822 - 71,633,185 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl871,600,828 - 71,632,967 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1871,289,897 - 71,322,193 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0871,329,474 - 71,362,251 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0871,728,858 - 71,761,268 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
APOPT1
(Sus scrofa - pig)		 No map positions available.
COA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12481,503,069 - 81,533,578 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2481,503,134 - 81,535,430 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605368,807,395 - 68,837,872 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apopt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,293,851 - 1,315,454 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247341,295,053 - 1,315,620 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116905498
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17129,308,177 - 129,333,964 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Coa8
1104 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:117
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000015373
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
RH134587  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,796,769 - 130,796,964 (+)MAPPERmRatBN7.2
Rnor_6.06136,304,009 - 136,304,203NCBIRnor6.0
Rnor_6.06136,210,625 - 136,210,819NCBIRnor6.0
Rnor_5.06144,205,920 - 144,206,114UniSTSRnor5.0
RGSC_v3.46136,519,805 - 136,519,999UniSTSRGSC3.4
Celera6128,351,917 - 128,352,111UniSTS
RH 3.4 Map6781.0UniSTS
Cytogenetic Map6q32UniSTS
AA892746  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86136,605,280 - 136,605,578 (+)Marker Load Pipeline
mRatBN7.26130,784,124 - 130,784,422 (+)MAPPERmRatBN7.2
Rnor_6.06136,291,365 - 136,291,662NCBIRnor6.0
Rnor_6.06136,197,703 - 136,198,000NCBIRnor6.0
Rnor_5.06144,218,739 - 144,219,036UniSTSRnor5.0
RGSC_v3.46136,507,161 - 136,507,458UniSTSRGSC3.4
Celera6128,339,449 - 128,339,746UniSTS
RH 3.4 Map6781.1UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 12 74 196 125 120 77 98 77 12 415 217 11 163 91 111 43 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000015373   ⟹   ENSRNOP00000015373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,592,787 - 136,619,602 (+)Ensembl
mRatBN7.2 Ensembl6130,771,199 - 130,797,081 (+)Ensembl
Rnor_6.0 Ensembl6136,185,487 - 136,210,940 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091946   ⟹   ENSRNOP00000069759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,593,399 - 136,617,352 (+)Ensembl
mRatBN7.2 Ensembl6130,772,220 - 130,796,197 (+)Ensembl
Rnor_6.0 Ensembl6136,279,496 - 136,304,095 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103091   ⟹   ENSRNOP00000089878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6136,593,399 - 136,609,234 (+)Ensembl
mRatBN7.2 Ensembl6130,772,220 - 130,794,716 (+)Ensembl
RefSeq Acc Id: NM_001037769   ⟹   NP_001032858
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,593,399 - 136,618,237 (+)NCBI
mRatBN7.26130,772,243 - 130,797,081 (+)NCBI
Rnor_6.06136,185,772 - 136,210,936 (+)NCBI
Rnor_5.06144,205,803 - 144,230,967 (-)NCBI
RGSC_v3.46136,495,214 - 136,520,116 (+)RGD
Sequence:
RefSeq Acc Id: XM_063261787   ⟹   XP_063117857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,593,402 - 136,617,986 (+)NCBI
RefSeq Acc Id: XM_063261788   ⟹   XP_063117858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,593,404 - 136,618,234 (+)NCBI
RefSeq Acc Id: XM_063261789   ⟹   XP_063117859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86136,593,402 - 136,615,406 (+)NCBI
RefSeq Acc Id: NP_001032858   ⟸   NM_001037769
- UniProtKB: Q32Q90 (UniProtKB/Swiss-Prot),   A6KBS9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069759   ⟸   ENSRNOT00000091946
Ensembl Acc Id: ENSRNOP00000015373   ⟸   ENSRNOT00000015373
Ensembl Acc Id: ENSRNOP00000089878   ⟸   ENSRNOT00000103091
RefSeq Acc Id: XP_063117857   ⟸   XM_063261787
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AB95 (UniProtKB/TrEMBL),   A0A8L2R305 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117859   ⟸   XM_063261789
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117858   ⟸   XM_063261788
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q32Q90-F1-model_v2 AlphaFold Q32Q90 1-193 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694844
Promoter ID:EPDNEW_R5369
Type:initiation region
Name:Apopt1_1
Description:apoptogenic 1, mitochondrial
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06136,279,483 - 136,279,543EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304719 AgrOrtholog
BioCyc Gene G2FUF-35828 BioCyc
Ensembl Genes ENSRNOG00000011542 Ensembl
  ENSRNOG00000058920 Ensembl
IMAGE_CLONE IMAGE:7936717 IMAGE-MGC_LOAD
InterPro APOPT UniProtKB/Swiss-Prot
KEGG Report rno:299341 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124853 IMAGE-MGC_LOAD
NCBI Gene 299341 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE ASSEMBLY FACTOR 8 UniProtKB/Swiss-Prot
  PTHR31107 UniProtKB/Swiss-Prot
Pfam DUF2315 UniProtKB/Swiss-Prot
PhenoGen Coa8 PhenoGen
RatGTEx ENSRNOG00000011542 RatGTEx
  ENSRNOG00000058920 RatGTEx
UniProt A0A8I6AB95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q7C7_RAT UniProtKB/TrEMBL
  A0A8L2R305 ENTREZGENE, UniProtKB/TrEMBL
  A6KBS9 ENTREZGENE, UniProtKB/TrEMBL
  APOP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-29 Coa8  cytochrome c oxidase assembly factor 8  Apopt1  apoptogenic 1, mitochondrial  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-13 Apopt1  apoptogenic 1, mitochondrial  Apopt1  apoptogenic 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-09-29 Apopt1  apoptogenic 1  RGD1304719  similar to RIKEN cDNA 2810002N01  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1304719  similar to RIKEN cDNA 2810002N01  RGD1304719_predicted  similar to RIKEN cDNA 2810002N01 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1304719_predicted  similar to RIKEN cDNA 2810002N01 (predicted)  LOC299341_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299341_predicted  similar to RIKEN cDNA 2810002N01 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL