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Gene: Chordc1 (cysteine and histidine rich domain containing 1) Rattus norvegicus

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Symbol:

Chordc1

Name:

cysteine and histidine rich domain containing 1

RGD ID:

1304679

Description:

Predicted to enable Hsp90 protein binding activity; adenyl ribonucleotide binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including centrosome duplication; regulation of cellular response to heat; and regulation of centrosome duplication. Orthologous to human CHORDC1 (cysteine and histidine rich domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CHORD domain-containing protein 1; CHP-1; cysteine and histidine-rich domain (CHORD)-containing 1; cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1; cysteine and histidine-rich domain-containing protein 1; LOC315447; morgana

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	23,650,721 - 23,674,786 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	23,650,865 - 23,677,696 (+)	Ensembl				GRCr8
mRatBN7.2	8	15,374,356 - 15,398,436 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	15,374,471 - 15,399,162 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	19,360,765 - 19,384,727 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	17,658,562 - 17,682,524 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	15,554,646 - 15,578,590 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	17,421,552 - 17,445,513 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	17,421,557 - 17,446,165 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	17,494,921 - 17,518,882 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	15,732,905 - 15,759,297 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	16,803,491 - 16,826,848 (+)	NCBI		Celera
RGSC_v3.1	8	15,732,918 - 15,758,837 (+)	NCBI
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chronic myeloid leukemia (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP,ISO)

actinomycin D (ISO)

ADP (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

ATP (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

cadmium sulfate (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

celastrol (ISO)

chlordecone (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

clozapine (ISO)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethylarsinic acid (ISO)

dioxygen (ISO)

disulfiram (ISO)

diuron (EXP)

dorsomorphin (ISO)

elemental selenium (ISO)

elesclomol (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

Evodiamine (ISO)

flutamide (EXP)

folic acid (ISO)

furfural (ISO)

gedunin (ISO)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

GSK-J4 (ISO)

haloperidol (ISO)

hydrazine (ISO)

hypochlorous acid (ISO)

Indeno[1,2,3-cd]pyrene (ISO)

ivermectin (ISO)

ketamine (EXP)

lead diacetate (ISO)

leflunomide (ISO)

lithium chloride (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury dibromide (ISO)

mercury dichloride (EXP)

methamphetamine (EXP)

methotrexate (ISO)

methylarsonic acid (ISO)

methylisothiazolinone (ISO)

methylparaben (ISO)

nefazodone (EXP)

nimesulide (EXP)

nitrates (ISO)

Nutlin-3 (ISO)

ochratoxin A (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium dichromate (EXP)

Soman (EXP)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vitamin E (ISO)

zearalenone (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

centrosome duplication (IBA)

negative regulation of Rho-dependent protein serine/threonine kinase activity (ISO)

protein folding (ISO,ISS)

regulation of cellular response to heat (ISO,ISS)

regulation of centrosome duplication (ISO,ISS)

Molecular Function

ADP binding (ISO)

ATP binding (ISO)

Hsp90 protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12965203	PMID:19875381	PMID:20230755	PMID:20493909	PMID:23184943

Genomics

Comparative Map Data

Chordc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	23,650,721 - 23,674,786 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	23,650,865 - 23,677,696 (+)	Ensembl				GRCr8
mRatBN7.2	8	15,374,356 - 15,398,436 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	15,374,471 - 15,399,162 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	19,360,765 - 19,384,727 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	17,658,562 - 17,682,524 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	15,554,646 - 15,578,590 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	17,421,552 - 17,445,513 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	17,421,557 - 17,446,165 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	17,494,921 - 17,518,882 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	15,732,905 - 15,759,297 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	16,803,491 - 16,826,848 (+)	NCBI		Celera
RGSC_v3.1	8	15,732,918 - 15,758,837 (+)	NCBI
Cytogenetic Map	8	q13	NCBI

CHORDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	90,200,429 - 90,223,049 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	90,200,429 - 90,223,077 (-)	Ensembl			hg38	GRCh38
GRCh37	11	89,933,597 - 89,956,217 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	89,574,265 - 89,595,854 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	89,574,264 - 89,595,854	NCBI
Celera	11	87,234,115 - 87,257,056 (-)	NCBI		Celera
Cytogenetic Map	11	q14.3	NCBI
HuRef	11	86,018,019 - 86,040,962 (-)	NCBI		HuRef
CHM1_1	11	89,816,615 - 89,839,542 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	90,120,509 - 90,143,130 (-)	NCBI		T2T-CHM13v2.0

Chordc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	18,203,563 - 18,225,296 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	18,203,421 - 18,228,738 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	18,292,267 - 18,314,000 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	18,292,125 - 18,317,442 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	18,096,711 - 18,118,444 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	18,042,669 - 18,064,402 (+)	NCBI		MGSCv36	mm8
Celera	9	15,575,575 - 15,597,308 (+)	NCBI		Celera
Cytogenetic Map	9	A2	NCBI
cM Map	9	7.01	NCBI

Chordc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	3,699,769 - 3,717,191 (+)	Ensembl
ChiLan1.0	NW_004955414	3,699,652 - 3,717,200 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHORDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	91,014,849 - 91,038,851 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	92,094,735 - 92,123,036 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	85,170,779 - 85,193,659 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	88,660,038 - 88,689,535 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	88,668,179 - 88,689,378 (-)	Ensembl			panPan2	panpan1.1

CHORDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	10,129,812 - 10,152,416 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	10,129,341 - 10,149,105 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	10,026,591 - 10,048,553 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	10,311,656 - 10,333,767 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	10,311,168 - 10,344,822 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	10,106,512 - 10,128,579 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	10,165,450 - 10,187,312 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	10,215,497 - 10,237,595 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Chordc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	75,741,963 - 75,761,697 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936893	644,435 - 663,588 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936893	644,977 - 661,651 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHORDC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	23,181,850 - 23,208,683 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	23,187,770 - 23,208,592 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	26,044,315 - 26,060,725 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHORDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	81,326,464 - 81,350,640 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	81,328,422 - 81,350,214 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	44,399,584 - 44,429,216 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chordc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624845	225,718 - 244,636 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624845	226,022 - 244,636 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Chordc1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	14,049,057 - 14,070,160 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Chordc1
181 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	617
Count of miRNA genes:	286
Interacting mature miRNAs:	362
Transcripts:	ENSRNOT00000030569
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

BE120647

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	15,379,184 - 15,379,340 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	17,426,266 - 17,426,421	NCBI	Rnor6.0
Rnor_5.0	8	17,499,635 - 17,499,790	UniSTS	Rnor5.0
RGSC_v3.4	8	15,737,619 - 15,737,774	UniSTS	RGSC3.4
Celera	8	16,808,205 - 16,808,360	UniSTS
Cytogenetic Map	8	q12	UniSTS

RH139249

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	15,398,334 - 15,398,454 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	17,445,412 - 17,445,531	NCBI	Rnor6.0
Rnor_5.0	8	17,518,781 - 17,518,900	UniSTS	Rnor5.0
RGSC_v3.4	8	15,759,196 - 15,759,315	UniSTS	RGSC3.4
Celera	8	16,826,747 - 16,826,866	UniSTS
RH 3.4 Map	8	140.2	UniSTS
Cytogenetic Map	8	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030569 ⟹ ENSRNOP00000030171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	23,650,865 - 23,677,696 (+)	Ensembl
mRatBN7.2 Ensembl	8	15,374,472 - 15,399,162 (+)	Ensembl
Rnor_6.0 Ensembl	8	17,421,557 - 17,446,165 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109292 ⟹ ENSRNOP00000081675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	15,374,471 - 15,392,694 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159274 ⟹ ENSRNOP00000112690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	23,651,122 - 23,677,696 (+)	Ensembl

RefSeq Acc Id:

NM_001108128 ⟹ NP_001101598

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	23,650,821 - 23,674,786 (+)	NCBI
mRatBN7.2	8	15,374,471 - 15,398,436 (+)	NCBI
Rnor_6.0	8	17,421,552 - 17,445,513 (+)	NCBI
Rnor_5.0	8	17,494,921 - 17,518,882 (+)	NCBI
RGSC_v3.4	8	15,732,905 - 15,759,297 (+)	RGD
Celera	8	16,803,491 - 16,826,848 (+)	RGD

Sequence:

show sequence

TGTGCAACCGGAACGTTCGGGAAGATTCCTGAAGCAGTACCGGCGGCTTCCGGAAGCTAGCTGC
GGCCTGAACAGTAGTGCCGGTGAGGTGATTGCCGTGGTGATTCACTTCTACTCCTGGGTGGTGT
GTGTTTCGCCGGGAAAACGGAATGGCGCTCCTGTGCTACAACCGCGGCTGTGGCCAGCGTTTCG
ACCCCGAGGCCAATGCGGATGATGCTTGCACATACCACCCAGGCGTTCCTGTCTTTCATGATGC
CCTAAAGGGTTGGTCTTGCTGTAAGAGAAGAACAACGGATTTTTCTGACTTCTTAAGTATTGTA
GGATGTACAAAAGGTAGGCATAATAGTGAGAAGCCACCGGAACCAGTCAAGCCCGAAGTCAAGA
CTACTGAGAAGAAGGAACTATCTGAATTAAAACCCAAATTTCAGGAGCACATCATTCAAGCCCC
TAAACCAGTAGAAGCAATAAAAAGGCCAAGCCCAGATGAGCCAATGACAAACTTGGAATTAAAA
ATATCTGCTTCCCTAAAACAAGCACTTGATAAACTTAAACTGTCATCTGGGAATGAAGAAGATA
AAAAAGAAGAAGACAGTGATGAAATTAAGATTGGGACTTCTTGTAAAAATGGAGGGTGTTCAAA
GACATACCAAGGTCTACAGAGTCTAGAAGAAGTTTGTGTATATCATTCTGGAGTACCCATTTTC
CACGAGGGGATGAAATATTGGAGCTGCTGTAGAAGAAAAACTTCAGATTTTAATACATTCTTAG
CCCAAGAGGGATGTACAAGAGGGAAACATGTATGGACTAAAAAAGATGCTGGGAAAAAAGTTGT
TCCATGTAGACACGACTGGCATCAGACTGGGGGTGAAGTTACCATCTCAGTGTATGCTAAAAAT
TCTCTGCCAGAACTCAGTCAAGTAGAAGCAAATAGTACATTGTTAAATGTACACATTGTATTTG
AAGGAGAGAAAGAATTTCATCAAAATGTGAAACTATGGGGTGTGATTGATGTTAAACGAAGTTA
CGTAACTATGACTGCAACGAAGATTGAGATCACTATGAGAAAGGCAGAGCCCATGCAGTGGGCA
AGTCTTGAACTACCTACAACCAAAAAGCAGGAGAAACAAAAAGATATAGCTGATTGATTAGAAG
AGAAATAGAAACCTTGTCTAACTTAGAGTTCTTAATGTGTGTGGTGATGTAGTTGCTTGCTGCT
GCAATCGTTTTGTTGTTTTTAATCTGCCATTTTAGGGTTATCATGAGGTTCTTCAAAGCCAAAG
TCTGTTAAATTTTTGTGCCTCTATCTTCTTTTGAGTTGCATAATATGATTATTCAAGTCTCTTC
ACTAGAACTATAGTTGTTGCCCTTACACTTGAAGGGAGGGAAAGGACCCATAAGTATAACTGCA
GTACAGTATATTTTGGTATAAATTATTATGAACAGGAAATGACAGAGGATTTTTTTTTTTAAAT
TCTGATAACTCCTTTTTCCCTTAAATGGGAAAGCAAAGTGGTATATAGAAAAAATTGGATTGGC
CTTTCCATGAACATTTGTTACTATAATTCTTGAAAATTTTTAAGGAAAGACTTTTCTTTGTTTT
TCCCTATACAGTGGTTACTTTTTATAGTACTACTTCTGAAGCAGTGGAGTCAAAATGTGTGTGC
TGGCTAAGTTTATAATTTGTTTGCAGTTCAATTAATTTCAGAAAGTTGCATCAATACTTGCATT
ACCTGGCAAGCAGTATAATTTAAGTCTATAGAAAATAAACTAAGATTATAGAATTATCAATTTG
GTTAAAATTCATAAGAGTAAGCAATAATGTTAAAATCTCTTTCCTGATTACTTAAAGTACTCTT
TATGGTATTTTGACTAAATTGTATCTGATTTGTAGTCTAAACACTCTTATGAATTATATCTGTC
TCCCTGATGAAAAACTGTATTTAAATTGTGAATGTGTAGCTTCGTTGAAATATATTAAGGTGTG
TGTTGAGGCTTGAATCTGAAATGTACCTGGAGGCTTGTTTTGAGCTGTTGGTCTTTCAACTTAA
GGCTCTATTTTGAAGGCTGTGAAACCTTAAGGATATCGATGGGTGAGGATTATATACTCCTGCT
GGTCTTATCCAGTCAGGATGTATGAATTACCTCTGTCCCATACTTCCACTGCTGCCTCCTCAGC
CATTATAGATTGTATCCTCTGGAACCGTGAGCCAAAATAATAAACCTTACCTTCCTTGAGTTGT
TTCTGTCATGTGCTTTGGTCAAGACAAGAAAAGTTATATACTACATAAAAATTATAGACTGTAT
TTTAGATCAGCTGAATATTATGTTAAGTTACTATAGTATAATTCTTTGGAGTTATTTTAAGGGT
TTCATGAAGAGTTTTACACATATAATGGTTATATGTTCTACTTTATTTTCATTAATTGTAGATG
ACACAGATAAACTTAGATCGAAATAAAACTTGAAGGTCTTTATTTGCCACACTCTTTGGTGTTA
ATGGAATCCTCACAAAGTTTCATTATAGTCAAAATACTGTTTTAGTTAATAGAGAATCTGTATG
GGGG

hide sequence

RefSeq Acc Id:

XR_005487807

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	23,650,721 - 23,670,358 (+)	NCBI
mRatBN7.2	8	15,374,356 - 15,393,917 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101598	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4A4T9	(Get FASTA)	NCBI Sequence Viewer
	EDL78419	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030171

RefSeq Acc Id:

NP_001101598 ⟸ NM_001108128

- UniProtKB:

D4A4T9 (UniProtKB/Swiss-Prot), A0A8L2QG05 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALLCYNRGCGQRFDPEANADDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH
NSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQ
ALDKLKLSSGNEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYW
SCCRRKTSDFNTFLAQEGCTRGKHVWTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSQ
VEANSTLLNVHIVFEGEKEFHQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPTT
KKQEKQKDIAD

hide sequence

Ensembl Acc Id:

ENSRNOP00000030171 ⟸ ENSRNOT00000030569

Ensembl Acc Id:

ENSRNOP00000081675 ⟸ ENSRNOT00000109292

Ensembl Acc Id:

ENSRNOP00000112690 ⟸ ENSRNOT00000159274

Protein Domains

CHORD CS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A4T9-F1-model_v2	AlphaFold	D4A4T9	1-331	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695757

Promoter ID:

EPDNEW_R6282

Type:

initiation region

Name:

Chordc1_1

Description:

cysteine and histidine rich domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	17,421,596 - 17,421,656	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304679	AgrOrtholog
BioCyc Gene	G2FUF-31605	BioCyc
Ensembl Genes	ENSRNOG00000026643	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000030569	ENTREZGENE
Gene3D-CATH	2.60.40.790	UniProtKB/Swiss-Prot
	4.10.1130.20	UniProtKB/Swiss-Prot
InterPro	CHORD_dom	UniProtKB/Swiss-Prot
	CHORD_protein	UniProtKB/Swiss-Prot
	CS_dom	UniProtKB/Swiss-Prot
	HSP20-like_chaperone	UniProtKB/Swiss-Prot
KEGG Report	rno:315447	UniProtKB/Swiss-Prot
NCBI Gene	315447	ENTREZGENE
PANTHER	CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	CHORD	UniProtKB/Swiss-Prot
	PF04969	UniProtKB/Swiss-Prot
PhenoGen	Chordc1	PhenoGen
PROSITE	CHORD	UniProtKB/Swiss-Prot
	PS51203	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000026643	RatGTEx
Superfamily-SCOP	SSF49764	UniProtKB/Swiss-Prot
UniProt	A0A8L2QG05	ENTREZGENE, UniProtKB/TrEMBL
	CHRD1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-12	Chordc1	cysteine and histidine rich domain containing 1	Chordc1	cysteine and histidine-rich domain (CHORD)-containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Chordc1	cysteine and histidine-rich domain (CHORD)-containing 1	Chordc1	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Chordc1	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	Chordc1_predicted	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Chordc1_predicted	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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