Slc52a3 (solute carrier family 52 member 3) - Rat Genome Database

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Gene: Slc52a3 (solute carrier family 52 member 3) Rattus norvegicus
Analyze
Symbol: Slc52a3
Name: solute carrier family 52 member 3
RGD ID: 1304644
Description: Enables riboflavin transmembrane transporter activity. Involved in riboflavin transport. Located in plasma membrane. Human ortholog(s) of this gene implicated in Brown-Vialetto-Van Laere syndrome 1 and Fazio-Londe disease. Orthologous to human SLC52A3 (solute carrier family 52 member 3); INTERACTS WITH 17beta-estradiol; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC311536; LOC311536; MGC116234; Rft2; RGD1304644; riboflavin transporter 2; rRFT2; similar to RIKEN cDNA 2310046K01; solute carrier family 52, riboflavin transporter, member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,959,233 - 160,976,170 (+)NCBIGRCr8
mRatBN7.23140,498,924 - 140,515,845 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,509,473 - 140,514,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,413,961 - 144,418,585 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,997,774 - 153,002,398 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,739,621 - 150,744,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,503,266 - 147,517,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,511,406 - 147,516,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,853,145 - 153,866,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,360,661 - 142,365,285 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,266,232 - 142,288,334 (+)NCBI
Celera3139,263,935 - 139,268,559 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
plasma membrane  (IDA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification and functional characterization of rat riboflavin transporter 2. Yamamoto S, etal., J Biochem. 2009 Apr;145(4):437-43. doi: 10.1093/jb/mvn181. Epub 2009 Jan 3.
Additional References at PubMed
PMID:12477932   PMID:18755693   PMID:20206331   PMID:20463145   PMID:20724488   PMID:22273710   PMID:23413253   PMID:27964953   PMID:29428966  


Genomics

Comparative Map Data
Slc52a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,959,233 - 160,976,170 (+)NCBIGRCr8
mRatBN7.23140,498,924 - 140,515,845 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,509,473 - 140,514,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,413,961 - 144,418,585 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,997,774 - 153,002,398 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,739,621 - 150,744,225 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,503,266 - 147,517,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,511,406 - 147,516,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,853,145 - 153,866,321 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,360,661 - 142,365,285 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,266,232 - 142,288,334 (+)NCBI
Celera3139,263,935 - 139,268,559 (+)NCBICelera
Cytogenetic Map3q41NCBI
SLC52A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820760,080 - 780,033 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20760,080 - 776,015 (-)EnsemblGRCh38hg38GRCh38
GRCh3720740,724 - 756,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3620688,724 - 697,228 (-)NCBINCBI36Build 36hg18NCBI36
Build 3420688,724 - 697,131NCBI
Celera20835,489 - 844,006 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20692,137 - 700,684 (-)NCBIHuRef
CHM1_120740,737 - 749,241 (-)NCBICHM1_1
T2T-CHM13v2.020804,408 - 824,432 (-)NCBIT2T-CHM13v2.0
Slc52a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392151,838,431 - 151,851,178 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2151,838,431 - 151,851,178 (+)EnsemblGRCm39 Ensembl
GRCm382151,996,511 - 152,009,258 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2151,996,511 - 152,009,258 (+)EnsemblGRCm38mm10GRCm38
MGSCv372151,822,247 - 151,834,994 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,688,069 - 151,700,697 (+)NCBIMGSCv36mm8
Celera2157,812,297 - 157,825,037 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Slc52a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495559647,108 - 60,239 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495559648,463 - 60,239 (-)NCBIChiLan1.0ChiLan1.0
SLC52A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,850,120 - 1,866,219 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,846,948 - 1,863,047 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020970,380 - 986,368 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120739,556 - 755,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20739,556 - 755,486 (-)Ensemblpanpan1.1panPan2
SLC52A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,127,527 - 20,141,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,127,520 - 20,156,003 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2419,780,739 - 19,794,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02420,818,447 - 20,831,867 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2420,818,436 - 20,830,516 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,094,778 - 20,108,312 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,200,464 - 20,214,008 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,631,248 - 20,644,641 (+)NCBIUU_Cfam_GSD_1.0
Slc52a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,340,088 - 169,345,973 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648517,771,797 - 17,777,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC52A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,459,359 - 34,481,026 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,459,291 - 34,481,022 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,144,206 - 39,161,184 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC52A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,744,934 - 55,760,957 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,752,837 - 55,761,120 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660788,196,338 - 8,204,817 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc52a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247412,097,723 - 2,107,127 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247412,093,190 - 2,106,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc52a3
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:377
Count of miRNA genes:209
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000006828
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3140069424146976080Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 17 13 2
Low 3 11 29 18 17 18 1 60 18 21 9
Below cutoff 28 28 23 2 23 8 10 14 7 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006235238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000006828   ⟹   ENSRNOP00000006828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,509,473 - 140,514,096 (+)Ensembl
Rnor_6.0 Ensembl3147,511,563 - 147,516,186 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082438   ⟹   ENSRNOP00000074344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,509,491 - 140,514,096 (+)Ensembl
Rnor_6.0 Ensembl3147,511,406 - 147,516,455 (+)Ensembl
RefSeq Acc Id: NM_001037198   ⟹   NP_001032275
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,969,798 - 160,974,422 (+)NCBI
mRatBN7.23140,509,473 - 140,514,097 (+)NCBI
Rnor_6.03147,511,563 - 147,516,187 (+)NCBI
Rnor_5.03153,853,145 - 153,866,321 (+)NCBI
RGSC_v3.43142,360,661 - 142,365,285 (+)RGD
Celera3139,263,935 - 139,268,559 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235238   ⟹   XP_006235300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,257 - 160,974,422 (+)NCBI
mRatBN7.23140,498,924 - 140,514,099 (+)NCBI
Rnor_6.03147,503,266 - 147,516,192 (+)NCBI
Rnor_5.03153,853,145 - 153,866,321 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105052   ⟹   XP_038960980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,257 - 160,974,422 (+)NCBI
mRatBN7.23140,498,935 - 140,514,099 (+)NCBI
RefSeq Acc Id: XM_063283813   ⟹   XP_063139883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,974,422 (+)NCBI
RefSeq Acc Id: XM_063283814   ⟹   XP_063139884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,974,422 (+)NCBI
RefSeq Acc Id: XM_063283815   ⟹   XP_063139885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,976,170 (+)NCBI
RefSeq Acc Id: XM_063283816   ⟹   XP_063139886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,976,170 (+)NCBI
RefSeq Acc Id: XM_063283817   ⟹   XP_063139887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,974,422 (+)NCBI
RefSeq Acc Id: XM_063283818   ⟹   XP_063139888
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,974,422 (+)NCBI
RefSeq Acc Id: XM_063283819   ⟹   XP_063139889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,259 - 160,974,422 (+)NCBI
RefSeq Acc Id: XM_063283820   ⟹   XP_063139890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,961,685 - 160,974,422 (+)NCBI
RefSeq Acc Id: XM_063283821   ⟹   XP_063139891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,233 - 160,976,170 (+)NCBI
RefSeq Acc Id: XM_063283822   ⟹   XP_063139892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,959,257 - 160,973,539 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001032275   ⟸   NM_001037198
- UniProtKB: Q4FZU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006235300   ⟸   XM_006235238
- Peptide Label: isoform X1
- UniProtKB: G3V6N3 (UniProtKB/TrEMBL),   A6KHL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006828   ⟸   ENSRNOT00000006828
RefSeq Acc Id: ENSRNOP00000074344   ⟸   ENSRNOT00000082438
RefSeq Acc Id: XP_038960980   ⟸   XM_039105052
- Peptide Label: isoform X1
- UniProtKB: G3V6N3 (UniProtKB/TrEMBL),   A6KHL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139891   ⟸   XM_063283821
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139892   ⟸   XM_063283822
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139886   ⟸   XM_063283816
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139885   ⟸   XM_063283815
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139888   ⟸   XM_063283818
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139889   ⟸   XM_063283819
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139884   ⟸   XM_063283814
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139887   ⟸   XM_063283817
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139883   ⟸   XM_063283813
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139890   ⟸   XM_063283820
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4FZU9-F1-model_v2 AlphaFold Q4FZU9 1-463 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304644 AgrOrtholog
BioCyc Gene G2FUF-47285 BioCyc
Ensembl Genes ENSRNOG00000005132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006828 ENTREZGENE
  ENSRNOT00000006828.5 UniProtKB/TrEMBL
  ENSRNOT00000082438.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7459579 IMAGE-MGC_LOAD
InterPro Riboflavin_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:311536 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116234 IMAGE-MGC_LOAD
NCBI Gene 311536 ENTREZGENE
PANTHER PTHR12929 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 52, RIBOFLAVIN TRANSPORTER, MEMBER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1011 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc52a3 PhenoGen
RatGTEx ENSRNOG00000005132 RatGTEx
UniProt A0A0G2K7T9_RAT UniProtKB/TrEMBL
  A6KHL8 ENTREZGENE, UniProtKB/TrEMBL
  G3V6N3 ENTREZGENE, UniProtKB/TrEMBL
  Q4FZU9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc52a3  solute carrier family 52 member 3  Slc52a3  solute carrier family 52, riboflavin transporter, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Slc52a3  solute carrier family 52, riboflavin transporter, member 3  RGD1304644  similar to RIKEN cDNA 2310046K01  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1304644  similar to RIKEN cDNA 2310046K01  RGD1304644_predicted  similar to RIKEN cDNA 2310046K01 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1304644_predicted  similar to RIKEN cDNA 2310046K01 (predicted)  LOC311536_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311536_predicted  similar to RIKEN cDNA 2310046K01 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL