Ccser2 (coiled-coil serine-rich protein 2) - Rat Genome Database

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Gene: Ccser2 (coiled-coil serine-rich protein 2) Rattus norvegicus
Analyze
Symbol: Ccser2
Name: coiled-coil serine-rich protein 2
RGD ID: 1304626
Description: Predicted to enable microtubule binding activity. Predicted to be involved in microtubule bundle formation. Predicted to be active in microtubule cytoskeleton. Orthologous to human CCSER2 (coiled-coil serine rich protein 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam190b; family with sequence similarity 190, member B; Gcap14; granule cell antiserum positive 14; LOC306306; RGD1304626; serine-rich coiled-coil domain-containing protein 2; similar to KIAA1128 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81612,633,374 - 12,746,045 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1612,637,083 - 12,746,003 (-)EnsemblGRCr8
mRatBN7.21612,613,103 - 12,725,764 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1612,613,103 - 12,725,738 (-)EnsemblmRatBN7.2
Rnor_6.01614,090,547 - 14,210,512 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1614,095,058 - 14,210,449 (-)Ensemblrn6Rnor6.0
Rnor_5.01613,977,437 - 14,094,495 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41613,054,652 - 13,142,212 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1612,872,408 - 12,984,694 (-)NCBICelera
RGSC_v3.11613,055,202 - 13,142,210 (-)NCBI
Cytogenetic Map16p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
microtubule cytoskeleton  (IBA,IEA,ISO)

Molecular Function
microtubule binding  (IBA,IEA,ISO)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22673506  


Genomics

Comparative Map Data
Ccser2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81612,633,374 - 12,746,045 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1612,637,083 - 12,746,003 (-)EnsemblGRCr8
mRatBN7.21612,613,103 - 12,725,764 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1612,613,103 - 12,725,738 (-)EnsemblmRatBN7.2
Rnor_6.01614,090,547 - 14,210,512 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1614,095,058 - 14,210,449 (-)Ensemblrn6Rnor6.0
Rnor_5.01613,977,437 - 14,094,495 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41613,054,652 - 13,142,212 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1612,872,408 - 12,984,694 (-)NCBICelera
RGSC_v3.11613,055,202 - 13,142,210 (-)NCBI
Cytogenetic Map16p14NCBI
CCSER2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381084,328,589 - 84,518,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1084,328,586 - 84,518,521 (+)Ensemblhg38GRCh38
GRCh371086,088,345 - 86,278,273 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361086,078,390 - 86,268,256 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341086,121,039 - 86,268,252NCBI
Celera1080,084,093 - 80,273,189 (+)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1079,933,826 - 80,123,654 (+)NCBIHuRef
CHM1_11086,370,460 - 86,560,502 (+)NCBICHM1_1
T2T-CHM13v2.01085,207,105 - 85,397,074 (+)NCBIT2T-CHM13v2.0
Ccser2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391436,596,893 - 36,690,762 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1436,596,893 - 36,690,734 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381436,874,936 - 36,968,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1436,874,936 - 36,968,777 (-)Ensemblmm10GRCm38
MGSCv371437,688,122 - 37,781,950 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361435,786,177 - 35,880,005 (-)NCBIMGSCv36mm8
Celera1433,085,531 - 33,180,090 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1421.29NCBI
Ccser2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555103,830,778 - 3,962,714 (+)Ensembl
ChiLan1.0NW_0049555103,802,239 - 3,962,533 (+)NCBIChiLan1.0ChiLan1.0
CCSER2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2896,310,251 - 96,500,141 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11096,315,578 - 96,505,460 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01080,743,749 - 80,933,511 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11084,314,312 - 84,503,093 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1084,314,312 - 84,503,093 (+)EnsemblpanPan2panpan1.1
CCSER2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1432,543,705 - 32,733,149 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl432,550,220 - 32,730,573 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha432,529,747 - 32,719,452 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0432,860,160 - 33,050,018 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl432,860,156 - 33,050,011 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1432,722,955 - 32,912,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0432,914,949 - 33,104,606 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0433,411,382 - 33,601,087 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccser2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721346,014,695 - 46,156,966 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936767931,922 - 1,074,262 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936767931,995 - 1,070,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCSER2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1485,544,126 - 85,677,928 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11485,544,124 - 85,677,932 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21492,348,995 - 92,430,692 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCSER2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1947,319,224 - 47,507,197 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl947,324,229 - 47,506,688 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660487,486,365 - 7,683,861 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccser2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248412,566,397 - 2,701,166 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248412,566,874 - 2,730,178 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccser2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11315,333,141 - 15,440,867 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccser2
587 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:365
Count of miRNA genes:202
Interacting mature miRNAs:241
Transcripts:ENSRNOT00000016494
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
D17Rat171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21612,711,305 - 12,711,501 (+)MAPPERmRatBN7.2
Rnor_6.01614,196,045 - 14,196,238NCBIRnor6.0
Rnor_5.01614,080,042 - 14,080,235UniSTSRnor5.0
RGSC_v3.41613,151,341 - 13,151,534UniSTSRGSC3.4
Celera1612,970,228 - 12,970,421UniSTS
SHRSP x BN Map1733.7899UniSTS
SHRSP x BN Map1733.7899RGD
Cytogenetic Map16p14UniSTS
RH142575  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21612,638,204 - 12,638,341 (+)MAPPERmRatBN7.2
Rnor_6.01614,115,648 - 14,115,784NCBIRnor6.0
Rnor_5.01614,002,538 - 14,002,674UniSTSRnor5.0
RGSC_v3.41613,076,449 - 13,076,585UniSTSRGSC3.4
Celera1612,897,510 - 12,897,646UniSTS
RH 3.4 Map16102.5UniSTS
Cytogenetic Map16p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001427502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016494   ⟹   ENSRNOP00000016494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1612,637,229 - 12,746,003 (-)Ensembl
mRatBN7.2 Ensembl1612,616,958 - 12,725,738 (-)Ensembl
Rnor_6.0 Ensembl1614,095,058 - 14,210,449 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098179   ⟹   ENSRNOP00000077902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1612,637,083 - 12,746,003 (-)Ensembl
mRatBN7.2 Ensembl1612,616,958 - 12,661,015 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106370   ⟹   ENSRNOP00000086338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1612,637,229 - 12,746,003 (-)Ensembl
mRatBN7.2 Ensembl1612,617,074 - 12,725,738 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111493   ⟹   ENSRNOP00000088345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1612,613,103 - 12,725,738 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118095   ⟹   ENSRNOP00000087728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1612,637,254 - 12,663,606 (-)Ensembl
mRatBN7.2 Ensembl1612,616,983 - 12,643,335 (-)Ensembl
RefSeq Acc Id: NM_001427501   ⟹   NP_001414430
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,637,229 - 12,746,003 (-)NCBI
RefSeq Acc Id: NM_001427502   ⟹   NP_001414431
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,637,229 - 12,746,003 (-)NCBI
RefSeq Acc Id: XM_017600329   ⟹   XP_017455818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,633,374 - 12,746,045 (-)NCBI
mRatBN7.21612,613,103 - 12,725,756 (-)NCBI
Rnor_6.01614,130,751 - 14,210,512 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095013   ⟹   XP_038950941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,633,374 - 12,709,962 (-)NCBI
mRatBN7.21612,613,103 - 12,689,672 (-)NCBI
RefSeq Acc Id: XM_039095014   ⟹   XP_038950942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,633,374 - 12,708,128 (-)NCBI
mRatBN7.21612,613,103 - 12,687,863 (-)NCBI
RefSeq Acc Id: XM_039095015   ⟹   XP_038950943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,633,374 - 12,681,346 (-)NCBI
mRatBN7.21612,613,103 - 12,661,086 (-)NCBI
RefSeq Acc Id: XM_039095016   ⟹   XP_038950944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,633,374 - 12,682,876 (-)NCBI
mRatBN7.21612,613,103 - 12,662,613 (-)NCBI
RefSeq Acc Id: XM_063275366   ⟹   XP_063131436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,637,227 - 12,746,027 (-)NCBI
RefSeq Acc Id: XM_063275367   ⟹   XP_063131437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,637,227 - 12,746,031 (-)NCBI
RefSeq Acc Id: XM_063275368   ⟹   XP_063131438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,680,443 - 12,746,033 (-)NCBI
RefSeq Acc Id: XP_017455818   ⟸   XM_017600329
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A5N0 (UniProtKB/TrEMBL),   A6K9I4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016494   ⟸   ENSRNOT00000016494
RefSeq Acc Id: XP_038950941   ⟸   XM_039095013
- Peptide Label: isoform X5
- UniProtKB: A6K9I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950942   ⟸   XM_039095014
- Peptide Label: isoform X5
- UniProtKB: A6K9I5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950944   ⟸   XM_039095016
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038950943   ⟸   XM_039095015
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000077902   ⟸   ENSRNOT00000098179
Ensembl Acc Id: ENSRNOP00000086338   ⟸   ENSRNOT00000106370
Ensembl Acc Id: ENSRNOP00000088345   ⟸   ENSRNOT00000111493
Ensembl Acc Id: ENSRNOP00000087728   ⟸   ENSRNOT00000118095
RefSeq Acc Id: XP_063131437   ⟸   XM_063275367
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063131436   ⟸   XM_063275366
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GG47 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414431   ⟸   NM_001427502
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A5N0 (UniProtKB/TrEMBL),   A6K9I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414430   ⟸   NM_001427501
- Peptide Label: isoform 1
- UniProtKB: D4A4E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131438   ⟸   XM_063275368
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4E5-F1-model_v2 AlphaFold D4A4E5 1-836 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699965
Promoter ID:EPDNEW_R10487
Type:initiation region
Name:Ccser2_1
Description:coiled-coil serine-rich protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01614,210,431 - 14,210,491EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304626 AgrOrtholog
BioCyc Gene G2FUF-12000 BioCyc
Ensembl Genes ENSRNOG00000022781 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016494 ENTREZGENE
  ENSRNOT00000016494.9 UniProtKB/TrEMBL
  ENSRNOT00000098179 ENTREZGENE
  ENSRNOT00000098179.2 UniProtKB/TrEMBL
  ENSRNOT00000106370 ENTREZGENE
  ENSRNOT00000106370.2 UniProtKB/TrEMBL
  ENSRNOT00000118095.2 UniProtKB/TrEMBL
InterPro CCSER UniProtKB/TrEMBL
NCBI Gene 306306 ENTREZGENE
PANTHER PTHR22461 UniProtKB/TrEMBL
  PTHR22461:SF2 UniProtKB/TrEMBL
PhenoGen Ccser2 PhenoGen
RatGTEx ENSRNOG00000022781 RatGTEx
UniProt A0A8I5Y7Z5_RAT UniProtKB/TrEMBL
  A0A8I6A5N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7S7_RAT UniProtKB/TrEMBL
  A0A8I6GG47 ENTREZGENE
  A6K9I4 ENTREZGENE, UniProtKB/TrEMBL
  A6K9I5 ENTREZGENE, UniProtKB/TrEMBL
  D4A4E5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Ccser2  coiled-coil serine-rich protein 2  Fam190b  family with sequence similarity 190, member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-01-11 Fam190b  family with sequence similarity 190, member B  Gcap14  granule cell antiserum positive 14  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Gcap14  granule cell antiserum positive 14  RGD1304626_predicted  similar to KIAA1128 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1304626_predicted  similar to KIAA1128 protein (predicted)  LOC306306_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306306_predicted  similar to KIAA1128 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL