Zfp13 (zinc finger protein 13) - Rat Genome Database

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Gene: Zfp13 (zinc finger protein 13) Rattus norvegicus
Analyze
Symbol: Zfp13
Name: zinc finger protein 13
RGD ID: 1304577
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; positive regulation of hydrogen peroxide biosynthetic process; and positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway. Predicted to be located in mitochondrion and nucleus. Orthologous to human ZNF205 (zinc finger protein 205); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC287095; zinc finger protein 205
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,119,707 - 13,128,284 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1013,120,084 - 13,128,243 (-)EnsemblGRCr8
mRatBN7.21012,615,455 - 12,623,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,615,190 - 12,623,615 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1017,358,316 - 17,366,482 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,847,113 - 16,855,279 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,348,309 - 12,356,440 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01012,908,643 - 12,916,784 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,908,643 - 12,916,784 (-)Ensemblrn6Rnor6.0
Rnor_5.01012,729,940 - 12,738,081 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41012,846,897 - 12,855,039 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1012,311,879 - 12,320,076 (-)NCBICelera
RGSC_v3.11012,847,100 - 12,860,555 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (IEA)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20231359   PMID:22306510  


Genomics

Comparative Map Data
Zfp13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,119,707 - 13,128,284 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1013,120,084 - 13,128,243 (-)EnsemblGRCr8
mRatBN7.21012,615,455 - 12,623,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,615,190 - 12,623,615 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1017,358,316 - 17,366,482 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,847,113 - 16,855,279 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,348,309 - 12,356,440 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01012,908,643 - 12,916,784 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,908,643 - 12,916,784 (-)Ensemblrn6Rnor6.0
Rnor_5.01012,729,940 - 12,738,081 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41012,846,897 - 12,855,039 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1012,311,879 - 12,320,076 (-)NCBICelera
RGSC_v3.11012,847,100 - 12,860,555 (-)NCBI
Cytogenetic Map10q12NCBI
ZNF205
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,112,586 - 3,120,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,112,550 - 3,120,527 (+)Ensemblhg38GRCh38
GRCh37163,162,587 - 3,170,518 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,102,564 - 3,110,519 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34163,102,606 - 3,110,517NCBI
Celera163,368,041 - 3,375,998 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,133,684 - 3,141,647 (+)NCBIHuRef
CHM1_1163,162,502 - 3,170,455 (+)NCBICHM1_1
T2T-CHM13v2.0163,138,563 - 3,147,008 (+)NCBIT2T-CHM13v2.0
Zfp13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391723,788,820 - 23,818,729 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1723,794,818 - 23,818,461 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381723,569,846 - 23,599,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,575,844 - 23,599,487 (-)Ensemblmm10GRCm38
MGSCv371723,712,819 - 23,736,454 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361723,303,474 - 23,327,109 (-)NCBIMGSCv36mm8
Celera1724,079,986 - 24,105,096 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1711.72NCBI
Znf205
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,242,423 - 14,249,309 (-)Ensembl
ChiLan1.0NW_00495544214,242,239 - 14,249,276 (-)NCBIChiLan1.0ChiLan1.0
ZNF205
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2183,657,041 - 3,664,928 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,438,456 - 7,453,645 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,054,056 - 2,061,992 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,233,372 - 3,241,216 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,233,794 - 3,241,216 (+)EnsemblpanPan2panpan1.1
ZNF205
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,085,069 - 38,095,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,085,231 - 38,097,678 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha639,326,648 - 39,336,612 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0638,396,682 - 38,406,643 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl638,396,677 - 38,404,696 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,082,747 - 38,092,708 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,055,200 - 38,065,164 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,530,903 - 38,540,867 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf205
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,624,313 - 105,636,830 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,072,653 - 1,081,755 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,072,633 - 1,084,923 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF205
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,091,443 - 39,106,615 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1339,091,439 - 39,105,633 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,478,579 - 40,483,042 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF205
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,827,888 - 2,844,569 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl52,837,617 - 2,844,383 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606827,981,443 - 27,989,788 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf205
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824837,373 - 852,710 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624824837,369 - 852,439 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf205
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v19896,537 - 904,806 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp13
29 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:69
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000004589
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
AI835008  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21012,615,637 - 12,615,775 (+)MAPPERmRatBN7.2
Rnor_6.01012,908,811 - 12,908,948NCBIRnor6.0
Rnor_5.01012,730,108 - 12,730,245UniSTSRnor5.0
RGSC_v3.41012,847,065 - 12,847,202UniSTSRGSC3.4
Celera1012,312,047 - 12,312,184UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 42 59 6 301 142 11 139 76 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004589   ⟹   ENSRNOP00000004589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1013,120,174 - 13,128,243 (-)Ensembl
mRatBN7.2 Ensembl1012,615,190 - 12,623,615 (-)Ensembl
Rnor_6.0 Ensembl1012,908,643 - 12,916,784 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096198   ⟹   ENSRNOP00000093521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1013,120,084 - 13,128,243 (-)Ensembl
mRatBN7.2 Ensembl1012,615,190 - 12,623,615 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156510   ⟹   ENSRNOP00000110222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1013,120,084 - 13,125,676 (-)Ensembl
RefSeq Acc Id: NM_001395554   ⟹   NP_001382483
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,120,084 - 13,128,243 (-)NCBI
mRatBN7.21012,615,455 - 12,623,615 (-)NCBI
RefSeq Acc Id: XM_063268538   ⟹   XP_063124608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,128,257 (-)NCBI
RefSeq Acc Id: XM_063268539   ⟹   XP_063124609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,128,284 (-)NCBI
RefSeq Acc Id: XM_063268540   ⟹   XP_063124610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,128,284 (-)NCBI
RefSeq Acc Id: XM_063268541   ⟹   XP_063124611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,128,257 (-)NCBI
RefSeq Acc Id: XM_063268542   ⟹   XP_063124612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,128,256 (-)NCBI
RefSeq Acc Id: XM_063268543   ⟹   XP_063124613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,128,284 (-)NCBI
RefSeq Acc Id: XM_063268544   ⟹   XP_063124614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,119,707 - 13,124,305 (-)NCBI
Ensembl Acc Id: ENSRNOP00000004589   ⟸   ENSRNOT00000004589
Ensembl Acc Id: ENSRNOP00000093521   ⟸   ENSRNOT00000096198
RefSeq Acc Id: NP_001382483   ⟸   NM_001395554
- UniProtKB: A0A8I6GKB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124613   ⟸   XM_063268543
- Peptide Label: isoform X4
- UniProtKB: D3ZT76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124610   ⟸   XM_063268540
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GKB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124609   ⟸   XM_063268539
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124611   ⟸   XM_063268541
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063124608   ⟸   XM_063268538
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124612   ⟸   XM_063268542
- Peptide Label: isoform X4
- UniProtKB: D3ZT76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124614   ⟸   XM_063268544
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000110222   ⟸   ENSRNOT00000156510
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZT76-F1-model_v2 AlphaFold D3ZT76 1-399 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304577 AgrOrtholog
BioCyc Gene G2FUF-25925 BioCyc
Ensembl Genes ENSRNOG00000003455 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004589 ENTREZGENE
  ENSRNOT00000004589.6 UniProtKB/TrEMBL
  ENSRNOT00000096198 ENTREZGENE
  ENSRNOT00000096198.2 UniProtKB/TrEMBL
  ENSRNOT00000156510.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 287095 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp13 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003455 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6GKB8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M4N8_RAT UniProtKB/TrEMBL
  D3ZT76 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Zfp13  zinc finger protein 13   Zfp13_predicted  zinc finger protein 13 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfp13_predicted  zinc finger protein 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED