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Gene: Rnf150 (ring finger protein 150) Rattus norvegicus

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Symbol:

Rnf150

Name:

ring finger protein 150

RGD ID:

1304572

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human RNF150 (ring finger protein 150); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC364983; RGD1304572; similar to RIKEN cDNA A630007N06 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF150 (ring finger protein 150)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rnf150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rnf150 (ring finger protein 150)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRAV22 (T cell receptor alpha variable 22)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Rnf150 (ring finger protein 150)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RNF150 (ring finger protein 150)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf150b (ring finger protein 150b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf150b (ring finger protein 150b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf150b (ring finger protein 150b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	rnf150b (ring finger protein 150b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	rnf150b (ring finger protein 150b)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf150b (ring finger protein 150b)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	H10E21.5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gol	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gol	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf150	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf150	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	41,912,276 - 42,133,217 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	41,912,276 - 42,133,217 (-)	Ensembl				GRCr8
mRatBN7.2	19	25,006,978 - 25,229,273 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	25,006,611 - 25,228,678 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	31,849,233 - 32,070,666 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	32,503,296 - 32,724,737 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	34,718,900 - 34,940,191 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	24,044,210 - 24,264,508 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	24,044,103 - 24,265,444 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	35,023,098 - 35,245,889 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	26,737,910 - 26,962,470 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	24,548,378 - 24,768,444 (-)	NCBI		Celera
RGSC_v3.1	19	26,966,663 - 26,967,290 (-)	NCBI
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cantharidin (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

DDT (EXP)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

fipronil (EXP)

genistein (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

leflunomide (ISO)

Licochalcone B (ISO)

malachite green cation (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (ISO)

progesterone (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

temozolomide (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ubiquitin-dependent protein catabolic process (IBA)

Cellular Component

cytoplasm (IBA)

membrane (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

ubiquitin protein ligase activity (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Rnf150
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	41,912,276 - 42,133,217 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	41,912,276 - 42,133,217 (-)	Ensembl				GRCr8
mRatBN7.2	19	25,006,978 - 25,229,273 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	25,006,611 - 25,228,678 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	31,849,233 - 32,070,666 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	32,503,296 - 32,724,737 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	34,718,900 - 34,940,191 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	24,044,210 - 24,264,508 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	24,044,103 - 24,265,444 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	35,023,098 - 35,245,889 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	26,737,910 - 26,962,470 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	24,548,378 - 24,768,444 (-)	NCBI		Celera
RGSC_v3.1	19	26,966,663 - 26,967,290 (-)	NCBI
Cytogenetic Map	19	q11	NCBI

RNF150
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	140,859,807 - 141,212,900 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	140,859,807 - 141,212,877 (-)	Ensembl			hg38	GRCh38
GRCh37	4	141,780,961 - 142,054,623 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	142,006,175 - 142,274,066 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	139,117,485 - 139,385,356 (-)	NCBI		Celera
Cytogenetic Map	4	q31.21	NCBI
HuRef	4	137,516,392 - 137,784,285 (-)	NCBI		HuRef
CHM1_1	4	141,763,725 - 142,032,048 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	144,179,641 - 144,532,545 (-)	NCBI		T2T-CHM13v2.0

Rnf150
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	83,589,889 - 83,817,900 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	83,589,985 - 83,817,897 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	82,863,266 - 83,091,271 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	82,863,356 - 83,091,268 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	85,387,255 - 85,615,170 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	85,742,822 - 85,974,276 (+)	NCBI		MGSCv36	mm8
Celera	8	87,238,149 - 87,365,916 (+)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	39.59	NCBI

Rnf150
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	2,027,027 - 2,252,734 (+)	Ensembl
ChiLan1.0	NW_004955471	2,026,779 - 2,255,816 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNF150
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	138,735,087 - 139,010,070 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	139,122,283 - 139,397,158 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	133,220,007 - 133,494,884 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	144,535,446 - 144,798,256 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	144,536,761 - 144,797,587 (-)	Ensembl			panPan2	panpan1.1

RNF150
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	1,817,199 - 2,053,632 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	1,817,164 - 2,053,846 (+)	NCBI			canFam3	CanFam3.1
CanFam3.1 Ensembl	19	1,817,164 - 2,053,846 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	2,064,804 - 2,306,476 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	1,880,449 - 2,124,056 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	1,880,508 - 2,118,636 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	1,820,213 - 2,061,577 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	2,180,969 - 2,422,619 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	2,537,003 - 2,778,744 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rnf150
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	49,387,031 - 49,601,433 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	6,825,098 - 7,040,686 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936535	6,823,946 - 7,039,354 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF150
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	86,088,668 - 86,332,913 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	86,087,938 - 86,330,418 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	91,560,067 - 91,695,534 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF150
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	87,789,859 - 88,052,237 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	67,313,384 - 67,585,549 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf150
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624853	300,193 - 549,323 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624853	291,946 - 549,392 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rnf150
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	17,131,998 - 17,358,526 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rnf150
1497 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	66
Count of miRNA genes:	56
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000004621
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
61328	Eae8	Experimental allergic encephalomyelitis QTL 8	4		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	19	41720609	49971820	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	30099383	47207961	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat

Markers in Region

D19Rat54

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	42,055,280 - 42,055,486 (+)	Marker Load Pipeline
mRatBN7.2	19	25,150,711 - 25,150,917 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	24,122,060 - 24,122,265	NCBI	Rnor6.0
Rnor_5.0	19	35,101,260 - 35,101,465	UniSTS	Rnor5.0
RGSC_v3.4	19	26,884,531 - 26,884,737	RGD	RGSC3.4
RGSC_v3.4	19	26,884,532 - 26,884,737	UniSTS	RGSC3.4
Celera	19	24,690,967 - 24,691,172	UniSTS
RGSC_v3.1	19	26,889,357 - 26,889,563	RGD
FHH x ACI Map	19	21.16	UniSTS
FHH x ACI Map	19	21.16	RGD
Cytogenetic Map	19	q11	UniSTS

13.MMHAP80FLE1.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	25,171,504 - 25,171,690 (+)	MAPPER	mRatBN7.2
mRatBN7.2	19	25,171,504 - 25,171,690 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	29,422,042 - 29,422,227	NCBI	Rnor6.0
Rnor_6.0	19	24,101,258 - 24,101,443	NCBI	Rnor6.0
Rnor_5.0	19	40,330,201 - 40,330,386	UniSTS	Rnor5.0
Rnor_5.0	19	35,080,458 - 35,080,643	UniSTS	Rnor5.0
RGSC_v3.4	19	26,905,325 - 26,905,510	UniSTS	RGSC3.4
Celera	19	24,711,758 - 24,711,943	UniSTS
Cytogenetic Map	19	q11	UniSTS

RH137695

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	25,027,869 - 25,028,052 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	24,244,717 - 24,244,899	NCBI	Rnor6.0
Rnor_5.0	19	35,223,334 - 35,223,516	UniSTS	Rnor5.0
RGSC_v3.4	19	26,761,447 - 26,761,629	UniSTS	RGSC3.4
Celera	19	24,568,512 - 24,568,694	UniSTS
Cytogenetic Map	19	q11	UniSTS

fk81g07.x1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	25,168,465 - 25,169,439 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	49,736,366 - 49,736,538 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	57,036,196 - 57,036,367	NCBI	Rnor6.0
Rnor_6.0	19	29,419,003 - 29,419,976	NCBI	Rnor6.0
Rnor_5.0	19	40,327,162 - 40,328,135	UniSTS	Rnor5.0
Rnor_5.0	7	57,057,860 - 57,058,031	UniSTS	Rnor5.0
RGSC_v3.4	7	53,381,450 - 53,381,621	UniSTS	RGSC3.4
RGSC_v3.4	19	26,902,286 - 26,903,259	UniSTS	RGSC3.4
Celera	19	24,708,721 - 24,709,694	UniSTS
Celera	7	46,533,823 - 46,533,994	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	91	59	6	359	191	11	142	85	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ231683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004621 ⟹ ENSRNOP00000056744

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	41,912,276 - 42,133,217 (-)	Ensembl
mRatBN7.2 Ensembl	19	25,006,611 - 25,228,678 (-)	Ensembl
Rnor_6.0 Ensembl	19	24,044,103 - 24,265,444 (+)	Ensembl

RefSeq Acc Id:

NM_001191093 ⟹ NP_001178022

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	41,912,276 - 42,133,217 (-)	NCBI
mRatBN7.2	19	25,007,729 - 25,228,654 (-)	NCBI
Rnor_6.0	19	24,044,210 - 24,264,508 (+)	NCBI
Rnor_5.0	19	35,023,098 - 35,245,889 (+)	NCBI
Celera	19	24,548,378 - 24,768,444 (-)	NCBI

Sequence:

show sequence

AGAGAGATGACAATGTCTCTCATCCAAGCGTGCCGCAGTCTGGCTCTCTCAACATGGCTGCTTT
CCTTTTGTTTCGTGCATCTGCTCTGCCTGGACTTCACCGTGGCGGAGAAGGAGGAATGGTACAC
CGCCTTCGTGAACATCACCTATACGGAGCCCGAGTCCGGGGCCGCGGTAGCGGGCGGTGGTGGT
GGCGCCGAGCTGCACACAGAGAAGAGCGAGTGCGGGCGATACGGCGAGCACTCGCCCAAGCAGG
ACGCGCGCGGCGAGGTGGTCATGGCCAGTTCGGTCCACGACCGCCTGGCTTGCGACCCCAACAC
CAAGTTCGCGGCGCCGGCCCACGGCAAACACTGGATAGCCCTCATCCCCAAGGGCAACTGCACC
TACAGGGATAAGATCCGGAACGCGTTTCTGCAGAACGCCTCCGCCGTGGTCATCTTCAACGTGG
GTTCCAACACCAACGAGACCATCACCATGCCCCACGCAGGTGTGGAAGACATCGTGGCTATAAT
GATTCCTGAGCCCAAAGGGAAGGAGCTAGTGAGTCTGCTGGAGAGGAACGTCACCGTGACCATG
TACATCACCATCGGCACCCGGAACTTGCAAAAATATGTGAGCCGCACGTCGGTTGTGTTTGTCT
CCATCTCCTTCATTGTCCTGATGATCATTTCCCTGGCATGGCTGGTCTTTTATTACATCCAGAG
GTTTCGGTATGCAAATGCCAGGGACAGGAACCAGCGCCGACTGGGAGATGCCGCAAAGAAAGCC
ATCAGCAAACTCCAAGTCAGGACCATCAGGAAGGGTGACAAGGAAACAGAGTCTGATTTTGATA
ACTGTGCAGTCTGCATAGAAGGATACAAGCCCAGCGATGTGGTCAGGATCCTGCCCTGCCGGCA
TCTTTTCCACAAGTCCTGTGTGGACCCCTGGCTTCTAGACCATCGCACCTGCCCCATGTGCAAG
ATGAACATTCTTAAGGCCCTAGGGATCCCGCCCAATGCTGACTGCATGGACGACTTGCCCATTG
ATTTCGAGGGCTCTCTAGGAGGCCCACCAACCAATCAGATCACAGGAGCCAGTGATACAACTGT
CAATGAAAGCTCAGTCACTCTGGACCCTGCTGTGCGGACAGTAGGAGCCCTGCAGGTGGTCCAG
GACCCAGACCCCGCTCCTCAGGAGGGAGAAGCCATCTTTACAACTAACAGTGACCAAGAGCCAG
CAGTGAGCAGTGATTCTGACATCTCGTTAATTATGGCCCTGGAAGTGGGGCTGTCTGATGTAGA
ACTTTCCACCGACCAAGACTGCGAGGAGGTGAAATCTTGAGAAGGTAGAAATGGACAAAAAGAA
GACATAGGAACCAGGGGGACAGGAAGGAAGCATGCTCCGAGAATTGAACTGGATACACGGCCTT
CGGGTCACCATGGCAACCCCTTCAGGTCACCATGGAAACCTTGAACTCTGTTCAGGGGCAGTAC
GAAAGCAATATCCAAAGTCTCCAGAGTCAGGACTCGGGTTCCCATCTCTGCGACAGCCTGTGGC
CTTGATGTGGGAGTTGAAAGCTGGATCCCTTGGTGTCTGTGCACACACGGCAAACCGGAAGGAG
ACCTTCACAGCTTCTTCACTTGATTTCAGCCTCTCCCGTCTTCTTGCTCTTGTTTGGGAAAGAC
GGTTTCGGTCCCTCAGCAATTTCTTTTTAAAGTTGATGTGTAGTTTCCAAATCAATCCCTCTGT
TTTCCCTTTGATTCACCCCAGCCCGTGTACAGAGGTCAGTTTAGAAATTCTGGTTGCTGCTCTG
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178022	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056744
	ENSRNOP00000056744.3

RefSeq Acc Id:	NP_001178022 ⟸ NM_001191093
- Peptide Label:	precursor
- UniProtKB:	D3ZV56 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTMSLIQACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYTEPESGAAVAGGGGGA ELHTEKSECGRYGEHSPKQDARGEVVMASSVHDRLACDPNTKFAAPAHGKHWIALIPKGNCTYR DKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKELVSLLERNVTVTMYI TIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAIS KLQVRTIRKGDKETESDFDNCAVCIEGYKPSDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMN ILKALGIPPNADCMDDLPIDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDP DPAPQEGEAIFTTNSDQEPAVSSDSDISLIMALEVGLSDVELSTDQDCEEVKS hide sequence

Ensembl Acc Id:

ENSRNOP00000056744 ⟸ ENSRNOT00000004621

Protein Domains

RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZV56-F1-model_v2	AlphaFold	D3ZV56	1-437	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304572	AgrOrtholog
BioCyc Gene	G2FUF-5999	BioCyc
Ensembl Genes	ENSRNOG00000003479	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004621	ENTREZGENE
	ENSRNOT00000004621.8	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	3.50.30.30	UniProtKB/TrEMBL
InterPro	PA_dom_sf	UniProtKB/TrEMBL
	Protease-assoc_domain	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:364983	UniProtKB/TrEMBL
NCBI Gene	364983	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	UniProtKB/TrEMBL
	RING FINGER PROTEIN 128	UniProtKB/TrEMBL
Pfam	PF02225	UniProtKB/TrEMBL
	zf-RING_2	UniProtKB/TrEMBL
PhenoGen	Rnf150	PhenoGen
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003479	RatGTEx
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	PA domain	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	D3ZV56	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Rnf150	ring finger protein 150	RGD1304572_predicted	similar to RIKEN cDNA A630007N06 gene (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1304572_predicted	similar to RIKEN cDNA A630007N06 gene (predicted)	LOC364983_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC364983_predicted	similar to RIKEN cDNA A630007N06 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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