Advanced Search (OLGA)

Gene: Igsf9 (immunoglobulin superfamily, member 9) Rattus norvegicus

Analyze

Symbol:

Igsf9

Name:

immunoglobulin superfamily, member 9

RGD ID:

1304566

Description:

Predicted to enable cell-cell adhesion mediator activity. Involved in regulation of synapse maturation. Is active in glutamatergic synapse and postsynaptic density membrane. Orthologous to human IGSF9 (immunoglobulin superfamily member 9); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

dendrite arborization and synapse maturation protein 1; igSF9A; immunoglobulin superfamily member 9A; LOC304982; protein turtle homolog A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IGSF9 (immunoglobulin superfamily member 9)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Igsf9 (immunoglobulin superfamily, member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Igsf9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IGSF9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IGSF9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Igsf9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IGSF9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IGSF9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Igsf9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Igsf9 (immunoglobulin superfamily member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	IGSF9 (immunoglobulin superfamily member 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Igsf9 (immunoglobulin superfamily, member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	igsf9b (immunoglobulin superfamily, member 9b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder)
Danio rerio (zebrafish):	igsf9b (immunoglobulin superfamily, member 9b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	igsf9a (immunoglobulin superfamily, member 9a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder)
Danio rerio (zebrafish):	igsf9a (immunoglobulin superfamily, member 9a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	igcm-2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	igcm-2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	tutl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	tutl	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	bdl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder)
Drosophila melanogaster (fruit fly):	bdl	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	igsf9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	igsf9	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	87,480,979 - 87,497,974 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	87,481,279 - 87,497,974 (+)	Ensembl				GRCr8
mRatBN7.2	13	84,948,643 - 84,965,616 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,948,619 - 84,965,607 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	87,452,351 - 87,468,970 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,852,624 - 88,869,243 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	86,037,362 - 86,053,983 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,809,459 - 90,832,300 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,815,562 - 90,832,469 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	95,388,686 - 95,405,645 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	88,487,239 - 88,503,824 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	84,558,646 - 84,575,230 (+)	NCBI		Celera
RGSC_v3.1	13	88,678,088 - 88,692,606 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-methylcholine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

allethrin (EXP)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

enniatin (ISO)

fenvalerate (EXP)

folic acid (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

inulin (ISO)

iron dichloride (ISO)

ketamine (EXP)

L-methionine (ISO)

lead(0) (ISO)

methapyrilene (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (EXP)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

piperonyl butoxide (ISO)

pirinixic acid (ISO)

pyrethrins (EXP)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

tributylstannane (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

dendrite development (ISO)

homophilic cell-cell adhesion (ISO)

nervous system development (IEA)

regulation of synapse maturation (IDA,IMP)

regulation of synapse organization (IEA,ISO)

Cellular Component

axon (IEA,ISO)

dendrite (IEA,ISO)

glutamatergic synapse (IDA,IEP,IMP)

inhibitory synapse (IEA,ISO)

neuron projection (IBA)

plasma membrane (IEA)

postsynaptic density membrane (IDA,IEP)

synapse (IEA)

Molecular Function

cell-cell adhesion mediator activity (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	The immunoglobulin family member dendrite arborization and synapse maturation 1 (Dasm1) controls excitatory synapse maturation.	Shi SH, etal., Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13346-51. doi: 10.1073/pnas.0405371101. Epub 2004 Aug 30.

Additional References at PubMed

PMID:15340157	PMID:24647940

Genomics

Comparative Map Data

Igsf9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	87,480,979 - 87,497,974 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	87,481,279 - 87,497,974 (+)	Ensembl				GRCr8
mRatBN7.2	13	84,948,643 - 84,965,616 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	84,948,619 - 84,965,607 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	87,452,351 - 87,468,970 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	88,852,624 - 88,869,243 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	86,037,362 - 86,053,983 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	90,809,459 - 90,832,300 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	90,815,562 - 90,832,469 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	95,388,686 - 95,405,645 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	88,487,239 - 88,503,824 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	84,558,646 - 84,575,230 (+)	NCBI		Celera
RGSC_v3.1	13	88,678,088 - 88,692,606 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

IGSF9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	159,927,041 - 159,945,613 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	159,927,039 - 159,949,468 (-)	Ensembl			hg38	GRCh38
GRCh37	1	159,896,831 - 159,915,403 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	158,163,455 - 158,182,010 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	156,709,904 - 156,728,459	NCBI
Celera	1	132,965,270 - 132,983,825 (-)	NCBI		Celera
Cytogenetic Map	1	q23.2	NCBI
HuRef	1	131,253,542 - 131,272,097 (-)	NCBI		HuRef
CHM1_1	1	161,292,158 - 161,310,711 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	159,064,110 - 159,082,679 (-)	NCBI		T2T-CHM13v2.0

Igsf9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	172,307,616 - 172,326,444 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	172,309,355 - 172,326,445 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	172,481,573 - 172,498,877 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	172,481,788 - 172,498,878 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	174,412,344 - 174,429,008 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	174,318,992 - 174,335,553 (+)	NCBI		MGSCv36	mm8
Celera	1	175,335,711 - 175,352,367 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.86	NCBI

Igsf9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	11,722,442 - 11,740,932 (-)	Ensembl
ChiLan1.0	NW_004955468	11,722,716 - 11,741,622 (-)	NCBI	ChiLan1.0	ChiLan1.0

IGSF9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	89,904,982 - 89,927,130 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	89,644,985 - 89,667,147 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	135,278,902 - 135,297,887 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	139,199,466 - 139,218,482 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	139,199,466 - 139,218,482 (-)	Ensembl			panPan2	panpan1.1

IGSF9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	22,207,323 - 22,222,832 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	22,206,660 - 22,222,823 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	22,283,603 - 22,300,706 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	22,328,879 - 22,345,834 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	22,328,933 - 22,345,830 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	38	22,628,568 - 22,645,630 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	23,039,987 - 23,056,085 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Igsf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	6,066,386 - 6,086,075 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	670,306 - 688,154 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	669,101 - 688,124 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IGSF9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	90,544,238 - 90,564,165 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	90,543,766 - 90,564,174 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	98,551,648 - 98,564,864 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IGSF9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	4,004,936 - 4,023,451 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	4,007,086 - 4,023,444 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	3,062,719 - 3,081,717 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Igsf9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	1,314,560 - 1,329,514 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	1,312,095 - 1,329,449 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Igsf9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	51,602,520 - 51,617,302 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Igsf9
164 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	53
Interacting mature miRNAs:	64
Transcripts:	ENSRNOT00000010930
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

BE103703

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	84,957,501 - 84,957,681 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	90,823,487 - 90,823,666	NCBI	Rnor6.0
Rnor_5.0	13	95,397,530 - 95,397,709	UniSTS	Rnor5.0
RGSC_v3.4	13	88,495,711 - 88,495,890	UniSTS	RGSC3.4
Celera	13	84,567,117 - 84,567,296	UniSTS
RH 3.4 Map	13	566.7	UniSTS
Cytogenetic Map	13	q24	UniSTS

AI103968

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	84,965,284 - 84,965,479 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	90,815,690 - 90,815,884	NCBI	Rnor6.0
Rnor_5.0	13	95,405,312 - 95,405,506	UniSTS	Rnor5.0
RGSC_v3.4	13	88,503,493 - 88,503,687	UniSTS	RGSC3.4
Celera	13	84,574,899 - 84,575,093	UniSTS
RH 3.4 Map	13	562.4	UniSTS
Cytogenetic Map	13	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	90	59	6	354	190	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010930 ⟹ ENSRNOP00000010930

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	87,481,389 - 87,497,965 (+)	Ensembl
mRatBN7.2 Ensembl	13	84,949,030 - 84,965,607 (+)	Ensembl
Rnor_6.0 Ensembl	13	90,815,562 - 90,832,138 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086508 ⟹ ENSRNOP00000069173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	87,481,279 - 87,497,974 (+)	Ensembl
mRatBN7.2 Ensembl	13	84,948,619 - 84,965,607 (+)	Ensembl
Rnor_6.0 Ensembl	13	90,815,594 - 90,832,469 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136402 ⟹ ENSRNOP00000099456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	87,481,389 - 87,497,965 (+)	Ensembl

RefSeq Acc Id:

NM_001107197 ⟹ NP_001100667

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,481,389 - 87,497,974 (+)	NCBI
mRatBN7.2	13	84,949,030 - 84,965,616 (+)	NCBI
Rnor_6.0	13	90,815,553 - 90,832,138 (-)	NCBI
Rnor_5.0	13	95,388,686 - 95,405,645 (+)	NCBI
RGSC_v3.4	13	88,487,239 - 88,503,824 (+)	RGD
Celera	13	84,558,646 - 84,575,230 (+)	RGD

Sequence:

show sequence

ACAGCGTGTAGTTGTGGGGGACAGAGGGAAGCGGGAGGGCTCTAGAGAGAAGTGAAATTATCTG
GGGGAGCAGAACTAGGGTAGTTTTGGAAGCGAAGTGGAATTACTGATAGGTCTGGTGGTTCTCC
CTCGGGTGTTGAGTGAGCTAGGCACCAACTGGAAGAGTGAGAGCTGAAACTGGTTGCCTGAGGC
GGATCAGAACGTGACTGGTGCTCTCTGGGATTGCCGGGCAGTGGACATTCCTCCGGCCCCTCCA
TCTGGGCTCCTGTGGATAGGAGGGGCCGGGCGAGCAGGCCAGCTGGGCTATGATTTGGTGTCTC
CGTCTGACCATCCTCAGCCTGATCCTCAGCCAAGGGGCTGACGGTCGAAGGAAGCCTGAGGTGG
TCTCTGTGGTGGGCCGGGCTGGGGAGAGTGCAGTGCTGGGCTGTGACTTGCTGCCTCCAGCTGG
CCGCCCCCCTCTGCATGTCATCGAGTGGCTGCGCTTTGGATTCCTGCTTCCCATCTTCATCCAG
TTCGGCCTCTACTCTCCCCGAATTGACCCTGATTACGTGGGACGAGTCCGTCTGCAGACAGGAG
CATCTCTCCAGATTGAGGGGCTCCGGGTGGAAGACCAGGGTTGGTACGAGTGCCGCGTGCTCTT
CCTGGACCAACACAGCCCTGAGCAGGATTTTGCCAATGGCTCCTGGGTGCACCTGACAGTCAAT
TCGCCCCCTCAGTTCCAGGAGACGCCTCCCTTAGTGTTGGAAGTGAAGGAACTGGAGGCTGTTA
CCTTGCGCTGTGTGGCCCTTGGCAGCCCTCAGCCTTATGTGACTTGGAAATTCCGAGGACAAGA
CCTTGGCAAAGGCCAGGGTCAGGTGCAAGTGCGGAATGGAACACTGTGGATCCGTCGGGTGGAG
CGAGGCAGCGCTGGAGACTACACCTGCCAAGCCTCCAGCACTGAGGGCAGCGTCACCCACACTA
CTCAGCTGCTGGTGCTAGGACCCCCTGTCATTGTGGTGCCCCCCAACAACAACACAGTCAATGC
CTCCCAGGATGTCTCTTTGGCTTGCCGGGCTGAGGCATACCCTGCAAACCTCACCTATAGCTGG
TTCCAGGATCGTATCAATGTCTTCCACATCAGCCGCTTACAGTCTCGAGTGCGGATCCTGGTAG
ATGGAAGCCTGTGGCTACAGGCCACTCAGCCTGATGACGCCGGCCACTATACCTGTGTTCCCAG
CAATGGCTTTCCGCATCCACCCTCAGCTTCTGCCTATCTCACTGTGCTCTACCCAGCCCAGGTG
ACAGTCATGCCTCCCGAGACACCCCTGCCCATTGGCATGCGTGGGGTGATACGGTGTCCGGTTC
GTGCTAATCCCCCACTACTGTTTGTCACCTGGACCAAAGACGGACAGGCCTTACAGCTGGACAA
GTTCCCTGGCTGGTCCCTGGGTCCAGAAGGCTCCCTCGTCATTGCCCTGGGAAATGAGGATGCC
TTGGGAGAATACTCCTGCACGCCCTACAACAGTCTTGGTACGGCTGGATCCTCCCCTGTGACCC
GAGTGCTGCTCAAGGCTCCCCCGGCTTTTATAGACCAGCCCAAGGAAGAGTATTTCCAAGAAGT
AGGGCGGGACCTACTCATCCCTTGCTCCGCCCGGGGAGACCCTCCTCCTATTGTCTCTTGGGCC
AAGGTGGGACGGGGGCTGCAGGGCCAGGCCCAGGTGGACAGCAACAACAGCCTCATCCTTCGAC
CCCTGACCAAGGAGGCCCATGGACGATGGGAATGCAGCGCCAGAAATGCTGTAGCCCACGTGAC
CATTTCTACCAACGTATACGTGCTAGGCACCAGTCCCCATGTCGTCACCAATGTGTCTGTGGTA
CCTTTACCCAAGGGTGCCAATGTCTCTTGGGAGCCTGGCTTTGACGGTGGCTATCTCCAGAGAT
TCAGTGTCTGGTATACCCCACTAGCCAAGCGTCCTGACCGAGCTCACCATGACTGGGTATCTCT
GGCTGTGCCTATGGGGGCTACACACCTCCTAGTGCCAGGGCTGCAGGCCTACACGCAGTATCAG
TTCAGTGTCCTTGCTCAGAACAAGCTGGGCAGTGGGCCTTTCAGCGAGATCGTCCTGTCTATAC
CTGAGGGGCTTCCTACCACACCGGCTGTCCCTAGGCTTCCTCCGACAGAGATGCCACCTCCCCT
GTCCCCTCCTAGAGGTTTGGTGGCAGTGAGGACACCCCGGGGGGTCCTTTTGCATTGGGATCCC
CCAGAACTCATCCCTGAGAGACTGGATGGCTACATCCTGGAGGGACGGCAAGGCTCCCAAGGCT
GGGAGATCCTGGACCAAGGTGTGGCTGGCACGGAAATTCAGCTGCTGGTCCCTGGCCTCATCAA
GGACGTTCTCTATGAGTTTCGCCTCGTGGCCTTTGCTGATAGCTACGTCAGTGACCCCAGTAAC
ATAGCCAACATCTCCACTTCCGGCCTGGAGGTGTACCCATCCCGCACACAGCTACCGGGTCTCC
TGCCCCAGCCTGTATTGGCTGGTGTTGTGGGTGGAGTCTGCTTCTTGGGCGTGGCCGTCCTTGT
GAGCATCCTGGCTGCCTGCCTCATGAATCGGCGAAGGGCTGCTCGCCGCCACAGGAAACGTCTA
CGCCAGGATCCACCTCTGATCTTCTCTCCACGTGGGAGGTCAGGCCCACACTCTGCTCCTGGCT
CAGACAGCCCTGACAGCGTGACCAAGTTCAAGCTTCAAGGCTCCCCAGTCCCCAGCCTACGCCA
GAGTCTGCTTTGGGGGGAGCCTGCCCGACCACCTAGCCCTCACCCGGATTCTCCACTTGGTCGG
GGACCTTTACCATTAGAGCCCATTTGCAGGGGCCCAGATGGGCGCTTTGTGATGGGACCCACTG
TGGCACCCCCACAAGAAAAGTTATGCCTGGAGCGGTCAGAACCTCGGACCTCAGCTAAACGCTT
GGCCCAATCCCTTGACTGTAGCAGTAGCAGCCCCAGTGGGGTCCCACAGCCCCTCTGCATCACA
GACATCAGCCCTGTGGGGCAGCCTCCTGCAGCCATGCCTAGCCCCCTACCAGGTCCGGGACCGC
TGCTCCAGTACCTGAGCCTGCCTTTCTTCCGAGAGATGAATGTGGATGGGGACTGGCCACCTCT
TGAGGAGCCCACACCTGCCTCACCTCCAGATTTCATGGGTAGTCATCCCTGCCCCACCTCATCT
TTCCTTCCTCCACCCGACTCACCTCCTACAAACCTCAGGGCAGTGCTTCCTGGGACACTGATGG
GGGTCGGGGTCTCCTCAGAGCCCCCTTACACAGCTTTGGCTGACTGGACACTGAGGGAGCGGGT
GTTGCCAGGCCTTCTCTCTGCTGCCCCTCGTGGCAGCCTCACCAGCCAGAGCAGTGGGCGGGGC
AGTGCTTCCTTCCTGCGCCCTCCCTCCACAGCCCCCTCTGCAGGGGGAAGCTACCTCAGTCCAG
CTCCAGGAGACACAAGCAGCTGGGCCAGTGGCCCTGAAAGGTGGCCCCGAAGGGAGCACGTGGT
GACAGTCAGCAAAAGGAGGAACACCTCTGTGGATGAGAACTATGAATGGGACTCGGAATTCCCG
GGGGACATGGAGCTGCTGGAGACTTGGCACCCAGGCTTGGCCAGTTCTCGGGCCCACCCTGAGC
TTGAGCCAGAGTTAGGTGTCAAGACTCCAGAGAAGAGCTGTCTCCTGAACACCACCCACGCTCC
CGGCCCCGAGGCCCGCTGTGCTGCTCTTCGGGAGGAATTCCTGGCTTTCCGACGACGCAGGGAC
GCTACCAGGGCCCGGTTACCAGTCTGTCAGCAGTCCATCTCTTACCCTGAACAGGCTACTCTGC
TATGAGCACACTTAGTGTGAAACTAAGAAAGGCATATGGATCTGCCAAGGAGGCCAAGACCTGG
GCTCCAAGCTGGGGCACTGCCCCTACCTCTTTGTGTCCAGTGATAGACCCTGATGGTGGCCTGG
TGGTAGGCTTGTGTGAGCTTGGTATAGAGAGGATATACTGACTCTTTAATTGAGTCTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTATGGTGTGGGTGCAGGTTTTTTTTTTTTTAAA
AACAGGTGAATAAAAGTCTGCAAAAATGTT

hide sequence

RefSeq Acc Id:

XM_006250290 ⟹ XP_006250352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,480,979 - 87,497,972 (+)	NCBI
mRatBN7.2	13	84,948,643 - 84,965,614 (+)	NCBI
Rnor_6.0	13	90,815,553 - 90,832,300 (-)	NCBI
Rnor_5.0	13	95,388,686 - 95,405,645 (+)	NCBI

Sequence:

show sequence

TTGGCGGTCTCCAGGGCGACGGGAGGCGCTCGGGGCATCTAAGGCGGGGAGGCGGGTCCGCCCC
CTATTGTGTGGCTGCGAGAGCAGAGCTGTGCGGTGCAGAGCAGGTCTGGTGGTTCTCCCTCGGG
TGTTGAGTGAGCTAGGCACCAACTGGAAGAGTGAGAGCTGAAACTGGTTGCCTGAGGCGGATCA
GAACGTGACTGGTGCTCTCTGGGATTGCCGGGCAGTGGACATTCCTCCGGCCCCTCCATCTGGG
CTCCTGTGGATAGGAGGGGCCGGGCGAGCAGGCCAGCTGGGCTATGATTTGGTGTCTCCGTCTG
ACCATCCTCAGCCTGATCCTCAGCCAAGGGGCTGACGGTCGAAGGAAGCCTGAGGTGGTCTCTG
TGGTGGGCCGGGCTGGGGAGAGTGCAGTGCTGGGCTGTGACTTGCTGCCTCCAGCTGGCCGCCC
CCCTCTGCATGTCATCGAGTGGCTGCGCTTTGGATTCCTGCTTCCCATCTTCATCCAGTTCGGC
CTCTACTCTCCCCGAATTGACCCTGATTACGTGGGACGAGTCCGTCTGCAGACAGGAGCATCTC
TCCAGATTGAGGGGCTCCGGGTGGAAGACCAGGGTTGGTACGAGTGCCGCGTGCTCTTCCTGGA
CCAACACAGCCCTGAGCAGGATTTTGCCAATGGCTCCTGGGTGCACCTGACAGTCAATTCGCCC
CCTCAGTTCCAGGAGACGCCTCCCTTAGTGTTGGAAGTGAAGGAACTGGAGGCTGTTACCTTGC
GCTGTGTGGCCCTTGGCAGCCCTCAGCCTTATGTGACTTGGAAATTCCGAGGACAAGACCTTGG
CAAAGGCCAGGGTCAGGTGCAAGTGCGGAATGGAACACTGTGGATCCGTCGGGTGGAGCGAGGC
AGCGCTGGAGACTACACCTGCCAAGCCTCCAGCACTGAGGGCAGCGTCACCCACACTACTCAGC
TGCTGGTGCTAGGACCCCCTGTCATTGTGGTGCCCCCCAACAACAACACAGTCAATGCCTCCCA
GGATGTCTCTTTGGCTTGCCGGGCTGAGGCATACCCTGCAAACCTCACCTATAGCTGGTTCCAG
GATCGTATCAATGTCTTCCACATCAGCCGCTTACAGTCTCGAGTGCGGATCCTGGTAGATGGAA
GCCTGTGGCTACAGGCCACTCAGCCTGATGACGCCGGCCACTATACCTGTGTTCCCAGCAATGG
CTTTCCGCATCCACCCTCAGCTTCTGCCTATCTCACTGTGCTCTACCCAGCCCAGGTGACAGTC
ATGCCTCCCGAGACACCCCTGCCCATTGGCATGCGTGGGGTGATACGGTGTCCGGTTCGTGCTA
ATCCCCCACTACTGTTTGTCACCTGGACCAAAGACGGACAGGCCTTACAGCTGGACAAGTTCCC
TGGCTGGTCCCTGGGTCCAGAAGGCTCCCTCGTCATTGCCCTGGGAAATGAGGATGCCTTGGGA
GAATACTCCTGCACGCCCTACAACAGTCTTGGTACGGCTGGATCCTCCCCTGTGACCCGAGTGC
TGCTCAAGGCTCCCCCGGCTTTTATAGACCAGCCCAAGGAAGAGTATTTCCAAGAAGTAGGGCG
GGACCTACTCATCCCTTGCTCCGCCCGGGGAGACCCTCCTCCTATTGTCTCTTGGGCCAAGGTG
GGACGGGGGCTGCAGGGCCAGGCCCAGGTGGACAGCAACAACAGCCTCATCCTTCGACCCCTGA
CCAAGGAGGCCCATGGACGATGGGAATGCAGCGCCAGAAATGCTGTAGCCCACGTGACCATTTC
TACCAACGTATACGTGCTAGGCACCAGTCCCCATGTCGTCACCAATGTGTCTGTGGTACCTTTA
CCCAAGGGTGCCAATGTCTCTTGGGAGCCTGGCTTTGACGGTGGCTATCTCCAGAGATTCAGTG
TCTGGTATACCCCACTAGCCAAGCGTCCTGACCGAGCTCACCATGACTGGGTATCTCTGGCTGT
GCCTATGGGGGCTACACACCTCCTAGTGCCAGGGCTGCAGGCCTACACGCAGTATCAGTTCAGT
GTCCTTGCTCAGAACAAGCTGGGCAGTGGGCCTTTCAGCGAGATCGTCCTGTCTATACCTGAGG
GGCTTCCTACCACACCGGCTGTCCCTAGGCTTCCTCCGACAGAGATGCCACCTCCCCTGTCCCC
TCCTAGAGGTTTGGTGGCAGTGAGGACACCCCGGGGGGTCCTTTTGCATTGGGATCCCCCAGAA
CTCATCCCTGAGAGACTGGATGGCTACATCCTGGAGGGACGGCAAGGCTCCCAAGGCTGGGAGA
TCCTGGACCAAGGTGTGGCTGGCACGGAAATTCAGCTGCTGGTCCCTGGCCTCATCAAGGACGT
TCTCTATGAGTTTCGCCTCGTGGCCTTTGCTGATAGCTACGTCAGTGACCCCAGTAACATAGCC
AACATCTCCACTTCCGGCCTGGAGGTGTACCCATCCCGCACACAGCTACCGGGTCTCCTGCCCC
AGCCTGTATTGGCTGGTGTTGTGGGTGGAGTCTGCTTCTTGGGCGTGGCCGTCCTTGTGAGCAT
CCTGGCTGCCTGCCTCATGAATCGGCGAAGGGCTGCTCGCCGCCACAGGAAACGTCTACGCCAG
GATCCACCTCTGATCTTCTCTCCACGTGGGAGGTCAGGCCCACACTCTGCTCCTGGCTCAGACA
GCCCTGACAGCGTGACCAAGTTCAAGCTTCAAGGCTCCCCAGTCCCCAGCCTACGCCAGAGTCT
GCTTTGGGGGGAGCCTGCCCGACCACCTAGCCCTCACCCGGATTCTCCACTTGGTCGGGGACCT
TTACCATTAGAGCCCATTTGCAGGGGCCCAGATGGGCGCTTTGTGATGGGACCCACTGTGGCAC
CCCCACAAGAAAAGTTATGCCTGGAGCGGTCAGAACCTCGGACCTCAGCTAAACGCTTGGCCCA
ATCCCTTGACTGTAGCAGTAGCAGCCCCAGTGGGGTCCCACAGCCCCTCTGCATCACAGACATC
AGCCCTGTGGGGCAGCCTCCTGCAGCCATGCCTAGCCCCCTACCAGGTCCGGGACCGCTGCTCC
AGTACCTGAGCCTGCCTTTCTTCCGAGAGATGAATGTGGATGGGGACTGGCCACCTCTTGAGGA
GCCCACACCTGCCTCACCTCCAGATTTCATGGGTAGTCATCCCTGCCCCACCTCATCTTTCCTT
CCTCCACCCGACTCACCTCCTACAAACCTCAGGGCAGTGCTTCCTGGGACACTGATGGGGGTCG
GGGTCTCCTCAGAGCCCCCTTACACAGCTTTGGCTGACTGGACACTGAGGGAGCGGGTGTTGCC
AGGCCTTCTCTCTGCTGCCCCTCGTGGCAGCCTCACCAGCCAGAGCAGTGGGCGGGGCAGTGCT
TCCTTCCTGCGCCCTCCCTCCACAGCCCCCTCTGCAGGGGGAAGCTACCTCAGTCCAGCTCCAG
GAGACACAAGCAGCTGGGCCAGTGGCCCTGAAAGGTGGCCCCGAAGGGAGCACGTGGTGACAGT
CAGCAAAAGGAGGAACACCTCTGTGGATGAGAACTATGAATGGGACTCGGAATTCCCGGGGGAC
ATGGAGCTGCTGGAGACTTGGCACCCAGGCTTGGCCAGTTCTCGGGCCCACCCTGAGCTTGAGC
CAGAGTTAGGTGTCAAGACTCCAGAGAAGAGCTGTCTCCTGAACACCACCCACGCTCCCGGCCC
CGAGGCCCGCTGTGCTGCTCTTCGGGAGGAATTCCTGGCTTTCCGACGACGCAGGGACGCTACC
AGGGCCCGGTTACCAGTCTGTCAGCAGTCCATCTCTTACCCTGAACAGGCTACTCTGCTATGAG
CACACTTAGTGTGAAACTAAGAAAGGCATATGGATCTGCCAAGGAGGCCAAGACCTGGGCTCCA
AGCTGGGGCACTGCCCCTACCTCTTTGTGTCCAGTGATAGACCCTGATGGTGGCCTGGTGGTAG
GCTTGTGTGAGCTTGGTATAGAGAGGATATACTGACTCTTTAATTGAGTCTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGGTTTATGGTGTGGGTGCAGGTTTTTTTTTTTTTAAAAACAGG
TGAATAAAAGTCTGCAAAAATGTT

hide sequence

RefSeq Acc Id:

XM_039090797 ⟹ XP_038946725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,481,728 - 87,497,972 (+)	NCBI
mRatBN7.2	13	84,949,361 - 84,965,614 (+)	NCBI

RefSeq Acc Id:

XM_039090798 ⟹ XP_038946726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,481,395 - 87,497,972 (+)	NCBI
mRatBN7.2	13	84,949,036 - 84,965,614 (+)	NCBI

RefSeq Acc Id:

XM_039090799 ⟹ XP_038946727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,481,198 - 87,497,972 (+)	NCBI
mRatBN7.2	13	84,948,643 - 84,965,614 (+)	NCBI

RefSeq Acc Id:

XM_063272373 ⟹ XP_063128443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,481,198 - 87,497,972 (+)	NCBI

RefSeq Acc Id:

XM_063272374 ⟹ XP_063128444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	87,481,064 - 87,495,222 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100667	(Get FASTA)	NCBI Sequence Viewer
	NP_001430545	(Get FASTA)	NCBI Sequence Viewer
	XP_006250352	(Get FASTA)	NCBI Sequence Viewer
	XP_038946725	(Get FASTA)	NCBI Sequence Viewer
	XP_038946726	(Get FASTA)	NCBI Sequence Viewer
	XP_038946727	(Get FASTA)	NCBI Sequence Viewer
	XP_063128443	(Get FASTA)	NCBI Sequence Viewer
	XP_063128444	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94715	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010930
	ENSRNOP00000010930.5
	ENSRNOP00000069173
GenBank Protein	P0C5H6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001100667 ⟸ NM_001107197
- Peptide Label:	precursor
- UniProtKB:	P0C5H6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MIWCLRLTILSLILSQGADGRRKPEVVSVVGRAGESAVLGCDLLPPAGRPPLHVIEWLRFGFLL PIFIQFGLYSPRIDPDYVGRVRLQTGASLQIEGLRVEDQGWYECRVLFLDQHSPEQDFANGSWV HLTVNSPPQFQETPPLVLEVKELEAVTLRCVALGSPQPYVTWKFRGQDLGKGQGQVQVRNGTLW IRRVERGSAGDYTCQASSTEGSVTHTTQLLVLGPPVIVVPPNNNTVNASQDVSLACRAEAYPAN LTYSWFQDRINVFHISRLQSRVRILVDGSLWLQATQPDDAGHYTCVPSNGFPHPPSASAYLTVL YPAQVTVMPPETPLPIGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLVIAL GNEDALGEYSCTPYNSLGTAGSSPVTRVLLKAPPAFIDQPKEEYFQEVGRDLLIPCSARGDPPP IVSWAKVGRGLQGQAQVDSNNSLILRPLTKEAHGRWECSARNAVAHVTISTNVYVLGTSPHVVT NVSVVPLPKGANVSWEPGFDGGYLQRFSVWYTPLAKRPDRAHHDWVSLAVPMGATHLLVPGLQA YTQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAVPRLPPTEMPPPLSPPRGLVAVRTPRGVL LHWDPPELIPERLDGYILEGRQGSQGWEILDQGVAGTEIQLLVPGLIKDVLYEFRLVAFADSYV SDPSNIANISTSGLEVYPSRTQLPGLLPQPVLAGVVGGVCFLGVAVLVSILAACLMNRRRAARR HRKRLRQDPPLIFSPRGRSGPHSAPGSDSPDSVTKFKLQGSPVPSLRQSLLWGEPARPPSPHPD SPLGRGPLPLEPICRGPDGRFVMGPTVAPPQEKLCLERSEPRTSAKRLAQSLDCSSSSPSGVPQ PLCITDISPVGQPPAAMPSPLPGPGPLLQYLSLPFFREMNVDGDWPPLEEPTPASPPDFMGSHP CPTSSFLPPPDSPPTNLRAVLPGTLMGVGVSSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQ SSGRGSASFLRPPSTAPSAGGSYLSPAPGDTSSWASGPERWPRREHVVTVSKRRNTSVDENYEW DSEFPGDMELLETWHPGLASSRAHPELEPELGVKTPEKSCLLNTTHAPGPEARCAALREEFLAF RRRRDATRARLPVCQQSISYPEQATLL hide sequence

RefSeq Acc Id:	XP_006250352 ⟸ XM_006250290
- Peptide Label:	isoform X1
- UniProtKB:	P0C5H6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MIWCLRLTILSLILSQGADGRRKPEVVSVVGRAGESAVLGCDLLPPAGRPPLHVIEWLRFGFLL PIFIQFGLYSPRIDPDYVGRVRLQTGASLQIEGLRVEDQGWYECRVLFLDQHSPEQDFANGSWV HLTVNSPPQFQETPPLVLEVKELEAVTLRCVALGSPQPYVTWKFRGQDLGKGQGQVQVRNGTLW IRRVERGSAGDYTCQASSTEGSVTHTTQLLVLGPPVIVVPPNNNTVNASQDVSLACRAEAYPAN LTYSWFQDRINVFHISRLQSRVRILVDGSLWLQATQPDDAGHYTCVPSNGFPHPPSASAYLTVL YPAQVTVMPPETPLPIGMRGVIRCPVRANPPLLFVTWTKDGQALQLDKFPGWSLGPEGSLVIAL GNEDALGEYSCTPYNSLGTAGSSPVTRVLLKAPPAFIDQPKEEYFQEVGRDLLIPCSARGDPPP IVSWAKVGRGLQGQAQVDSNNSLILRPLTKEAHGRWECSARNAVAHVTISTNVYVLGTSPHVVT NVSVVPLPKGANVSWEPGFDGGYLQRFSVWYTPLAKRPDRAHHDWVSLAVPMGATHLLVPGLQA YTQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAVPRLPPTEMPPPLSPPRGLVAVRTPRGVL LHWDPPELIPERLDGYILEGRQGSQGWEILDQGVAGTEIQLLVPGLIKDVLYEFRLVAFADSYV SDPSNIANISTSGLEVYPSRTQLPGLLPQPVLAGVVGGVCFLGVAVLVSILAACLMNRRRAARR HRKRLRQDPPLIFSPRGRSGPHSAPGSDSPDSVTKFKLQGSPVPSLRQSLLWGEPARPPSPHPD SPLGRGPLPLEPICRGPDGRFVMGPTVAPPQEKLCLERSEPRTSAKRLAQSLDCSSSSPSGVPQ PLCITDISPVGQPPAAMPSPLPGPGPLLQYLSLPFFREMNVDGDWPPLEEPTPASPPDFMGSHP CPTSSFLPPPDSPPTNLRAVLPGTLMGVGVSSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQ SSGRGSASFLRPPSTAPSAGGSYLSPAPGDTSSWASGPERWPRREHVVTVSKRRNTSVDENYEW DSEFPGDMELLETWHPGLASSRAHPELEPELGVKTPEKSCLLNTTHAPGPEARCAALREEFLAF RRRRDATRARLPVCQQSISYPEQATLL hide sequence

Ensembl Acc Id:

ENSRNOP00000010930 ⟸ ENSRNOT00000010930

Ensembl Acc Id:

ENSRNOP00000069173 ⟸ ENSRNOT00000086508

RefSeq Acc Id:	XP_038946727 ⟸ XM_039090799
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2R0J7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946726 ⟸ XM_039090798
- Peptide Label:	isoform X1
- UniProtKB:	P0C5H6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038946725 ⟸ XM_039090797
- Peptide Label:	isoform X1
- UniProtKB:	P0C5H6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128444 ⟸ XM_063272374
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063128443 ⟸ XM_063272373
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000099456 ⟸ ENSRNOT00000136402

Protein Domains

Fibronectin type-III Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P0C5H6-F1-model_v2	AlphaFold	P0C5H6	1-1179	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699027

Promoter ID:

EPDNEW_R9552

Type:

single initiation site

Name:

Igsf9_1

Description:

immunoglobulin superfamily, member 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	90,832,234 - 90,832,294	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304566	AgrOrtholog
BioCyc Gene	G2FUF-17312	BioCyc
Ensembl Genes	ENSRNOG00000008054	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010930	ENTREZGENE
	ENSRNOT00000010930.8	UniProtKB/Swiss-Prot
	ENSRNOT00000086508	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Neural/epithelial_adhesion	UniProtKB/Swiss-Prot
KEGG Report	rno:304982	UniProtKB/Swiss-Prot
NCBI Gene	304982	ENTREZGENE
PANTHER	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	UniProtKB/Swiss-Prot
	PROTEIN TURTLE HOMOLOG A	UniProtKB/Swiss-Prot
Pfam	fn3	UniProtKB/Swiss-Prot
	I-set	UniProtKB/Swiss-Prot
	Ig_3	UniProtKB/Swiss-Prot
PhenoGen	Igsf9	PhenoGen
PROSITE	FN3	UniProtKB/Swiss-Prot
	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008054	RatGTEx
SMART	FN3	UniProtKB/Swiss-Prot
	IGc2	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
UniProt	A0A8L2R0J7	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L6C4_RAT	UniProtKB/TrEMBL
	P0C5H6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Igsf9	immunoglobulin superfamily, member 9	Igsf9_predicted	immunoglobulin superfamily, member 9 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Igsf9_predicted	immunoglobulin superfamily, member 9 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message