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Gene: Arl9 (ARF like GTPase 9) Rattus norvegicus

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Symbol:

Arl9

Name:

ARF like GTPase 9 (Ensembl:ADP-ribosylation factor like GTPase 9)

RGD ID:

1303337

Description:

Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in nervous system development. Orthologous to human ARL9 (ARF like GTPase 9); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; copper atom.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ADP-ribosylation factor like GTPase 9; ADP-ribosylation factor-like 9; ADP-ribosylation factor-like protein 9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARL9 (ARF like GTPase 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arl9 (ADP-ribosylation factor-like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arl9 (ARF like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARL9 (ARF like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARL9 (ADP ribosylation factor like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arl9 (ARF like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARL9 (ADP ribosylation factor like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARL9 (ARF like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arl9 (ARF like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arl9 (ARF like GTPase 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GLRX2 (glutaredoxin 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Arl9 (ADP-ribosylation factor-like 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arl9 (ADP-ribosylation factor-like 9)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	ARL9 (ARF like GTPase 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ARL9 (ARF like GTPase 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arl9 (ADP-ribosylation factor-like 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arl9 (ADP-ribosylation factor-like 9)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arl9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	arl9	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arl10	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	31,511,845 - 31,521,038 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	31,511,330 - 31,520,988 (-)	Ensembl				GRCr8
mRatBN7.2	14	31,157,573 - 31,166,803 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	31,157,586 - 31,166,699 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	31,535,458 - 31,542,678 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	32,843,790 - 32,851,010 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	31,328,463 - 31,335,683 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	33,436,803 - 33,447,516 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	33,436,980 - 33,444,235 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	33,227,442 - 33,234,397 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	33,452,273 - 33,459,278 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	30,470,801 - 30,478,012 (-)	NCBI		Celera
RGSC_v3.1	14	33,452,272 - 33,459,278 (-)	NCBI
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aldehydo-D-glucose (ISO)

aristolochic acid A (ISO)

bisphenol A (EXP,ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

D-glucose (ISO)

decabromodiphenyl ether (EXP)

dextran sulfate (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

fenvalerate (EXP)

folic acid (ISO)

glucose (ISO)

levonorgestrel (ISO)

mercury dibromide (ISO)

methimazole (EXP)

methylarsonic acid (ISO)

p-chloromercuribenzoic acid (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone undecanoate (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:15033445

Genomics

Comparative Map Data

Arl9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	31,511,845 - 31,521,038 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	31,511,330 - 31,520,988 (-)	Ensembl				GRCr8
mRatBN7.2	14	31,157,573 - 31,166,803 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	31,157,586 - 31,166,699 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	31,535,458 - 31,542,678 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	32,843,790 - 32,851,010 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	31,328,463 - 31,335,683 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	33,436,803 - 33,447,516 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	33,436,980 - 33,444,235 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	33,227,442 - 33,234,397 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	33,452,273 - 33,459,278 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	30,470,801 - 30,478,012 (-)	NCBI		Celera
RGSC_v3.1	14	33,452,272 - 33,459,278 (-)	NCBI
Cytogenetic Map	14	p11	NCBI

ARL9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	56,505,209 - 56,524,453 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	56,505,209 - 56,524,959 (+)	Ensembl			hg38	GRCh38
GRCh37	4	57,371,375 - 57,390,619 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	57,066,132 - 57,084,815 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	54,877,789 - 54,896,005 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI
HuRef	4	53,325,471 - 53,344,157 (+)	NCBI		HuRef
CHM1_1	4	57,406,511 - 57,425,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	59,993,215 - 60,012,461 (+)	NCBI		T2T-CHM13v2.0

Arl9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	77,146,054 - 77,158,806 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	77,151,902 - 77,158,453 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	77,002,744 - 77,010,959 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	77,004,055 - 77,010,606 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	77,433,080 - 77,438,503 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	78,078,830 - 78,084,253 (+)	NCBI		MGSCv36	mm8
Celera	5	74,271,949 - 74,277,364 (+)	NCBI		Celera
Cytogenetic Map	5	C3.3	NCBI
cM Map	5	41.45	NCBI

Arl9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	14,500,544 - 14,515,351 (-)	Ensembl
ChiLan1.0	NW_004955447	14,500,696 - 14,515,286 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARL9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	73,252,659 - 73,274,538 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	73,458,177 - 73,480,061 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	67,397,990 - 67,418,407 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	73,968,079 - 73,987,737 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

ARL9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	48,719,660 - 48,738,367 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	48,719,798 - 48,738,294 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	48,610,137 - 48,629,042 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	49,333,916 - 49,352,827 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	49,333,927 - 49,352,900 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	49,005,950 - 49,024,852 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	48,534,771 - 48,553,678 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	49,480,849 - 49,499,772 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	27,560,083 - 27,575,357 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	18,726,574 - 18,739,081 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	18,722,725 - 18,738,478 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	55,763,239 - 55,776,645 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	55,762,902 - 55,776,649 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	57,774,056 - 57,786,882 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARL9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	12,105,750 - 12,124,457 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666066	12,780,478 - 12,800,013 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arl9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624761	12,901,025 - 12,916,499 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arl9
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	33,749,064 - 33,756,294 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arl9
145 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	56
Count of miRNA genes:	51
Interacting mature miRNAs:	52
Transcripts:	ENSRNOT00000044441
Prediction methods:	Microtar, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631528	Scl11	Serum cholesterol level QTL 11	4.9		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	14	17875645	36079022	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	31121333	39507682	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat

Markers in Region

BF387243

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	31,157,630 - 31,157,805 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	33,437,025 - 33,437,199	NCBI	Rnor6.0
Rnor_5.0	14	33,227,487 - 33,227,661	UniSTS	Rnor5.0
RGSC_v3.4	14	33,452,318 - 33,452,492	UniSTS	RGSC3.4
Celera	14	30,470,846 - 30,471,020	UniSTS
RH 3.4 Map	14	422.1	UniSTS
Cytogenetic Map	14	p11	UniSTS

BF404311

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	31,157,630 - 31,157,845 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	33,437,025 - 33,437,239	NCBI	Rnor6.0
Rnor_5.0	14	33,227,487 - 33,227,701	UniSTS	Rnor5.0
RGSC_v3.4	14	33,452,318 - 33,452,532	UniSTS	RGSC3.4
Celera	14	30,470,846 - 30,471,060	UniSTS
RH 3.4 Map	14	423.5	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
2	3	27	74	25	29	9	45	9	1	127	87	8	67	27	52	20	4	4

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_212459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001841015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BK001708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044441 ⟹ ENSRNOP00000049745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	31,513,149 - 31,517,880 (-)	Ensembl
mRatBN7.2 Ensembl	14	31,158,877 - 31,163,610 (-)	Ensembl
Rnor_6.0 Ensembl	14	33,436,980 - 33,444,235 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108975 ⟹ ENSRNOP00000085370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	31,511,330 - 31,520,988 (-)	Ensembl
mRatBN7.2 Ensembl	14	31,157,586 - 31,166,699 (-)	Ensembl

RefSeq Acc Id:

NM_212459 ⟹ NP_997624

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	31,511,845 - 31,520,988 (-)	NCBI
mRatBN7.2	14	31,157,573 - 31,166,718 (-)	NCBI
Rnor_6.0	14	33,436,980 - 33,444,235 (-)	NCBI
Rnor_5.0	14	33,227,442 - 33,234,397 (-)	NCBI
RGSC_v3.4	14	33,452,273 - 33,459,278 (-)	RGD
Celera	14	30,470,801 - 30,478,012 (-)	RGD

Sequence:

show sequence

ATGAGGGGATGTGCCAAGGTGAAAAACAAGCAGATCCTAGTACTAGGCCTGGATGGAGCAGGAA
AGACCAGTGTCCTCCACTTCCTGGCTTCCAACACAGTCCGGCACAGCACAGCACCCACCCTAGG
TTTCAATGCAGTTAACATCAGCTCTGAAGACAGGCAGATGGAGTTCCTGGAGATCGGTGGCAGT
GAGCCATTCCGCTCCTACTGGGACATGTACCTACCCAAGGGGTGGTTGCTCATCTTTGTGGTAG
ACTCAGCTGATCATAAACGGTTACCCGAAGCCAAGAAATACCTTCATCAGCTAATTGATCCAAA
TCCAGACCTCCCTCTCGTTGTATTTGCCAACAAACAGGATCTTGAAGCCGCCTATCGAATTACA
GATATCCACGATGCTTTGGCTCTGTCTGACGTGGGGAACGACAGGAAGCTCTTCTTGTTTGGAA
CTCAGGTGACTAGGAATGGTTCAGAGATCCCCTCCATCATGCAAGATGCCAAAGACCTAATTAC
ACACCTGGCCATAAATATGTAGAAGTGACTAAGACCCGCCCGGCCCTACTCAGCTCCCACCCAA
CCATCATCAGAGAGGGCTGAAAGGCAGGCTTACGCCAAAATTTCCACTTTCAATAAAAAATAAG
CCGTG

hide sequence

RefSeq Acc Id:

XM_017599099 ⟹ XP_017454588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	31,511,858 - 31,521,038 (-)	NCBI
mRatBN7.2	14	31,157,585 - 31,166,803 (-)	NCBI
Rnor_6.0	14	33,436,803 - 33,447,516 (-)	NCBI

Sequence:

show sequence

GTCTAAGAACTTCCTTTAAGATGAATATCTAAAATGGTCTCCTGCTCCTTCTAGCAAAACTATA
AATCTAGTGGATTGGGAGAACTCAGTTTTAACAAATCAAAATTCAGAGGCTGGAGAGATCGCTG
AGCAGTTAAAGCATTCGCTGCACTCCAGAGGCCCTGAGTTCAGTTCTCAGCACCAACATGGCAG
CTCCCCTGTCCGTGGCTCTAGTTCTAGGGACTCTCACAGCTCTTTGGCTGGCCCCTCTGGCAGC
ACAGGTGTGATACACATATTTAACACTGCAGGCAAAACACCCATAAACAAAATAAATCTTAGGA
AAAAAACAGACTATTGGTCTGTGCATTTGTAAGGCATTGAACCTAATATTTACAAGACAACTCA
AGATAACTAACCTTAAACACTGTCCCATTGCGCAAGCCTTCTGGAACTTGGCCATCACTCCTTA
CCAGCTTATGTAGAATATTGAAAAAGTCGATTTCATGTACAAACTGTATTTTTCCCTATGGTGG
GAAAAGAAAGGGGTCTCAACATGCTAGCCTGGTATTGAACTCAACCATAACTTCAGTCTGAGTT
TAAATTCTGTATTTTCTCGACTCCCCAGCACTAAGATACAGGCATGGGGCAACCACATCCTAAT
GTACGTAATTTCTCCTTACTGAGTAGGAGCCTAGGGCCTTTATCACTGACATACTACCCCCTTT
CCTAAACACTAACCTTGTTAAATTGAGATATCCTGAGTCAGTTCCTCAGCTAGTTAAAGAAACA
TGTCACCTCTCTGAAGTTACCACATACAGACCAAGAAGGGTGACTAGACTTTGGCTCGATTTGT
TTTTTGTTTTTGTTTGCTTTGTTATGGGTTTGTTTTGTTTTTGGTATCTGTCCTGATTAGCTGT
CAGGACCTGCAATCTGTCCTTAGCTGACAGTCTTGAATAGCAGCCCCTTTTGTGGCTCCCAGTG
GGATTCATGTGGAATTGGGACAGGGGGATTATAAATTGCATTCTGGGGTGATGGTTGTAAGCTG
AGGAAAGGTGGGGAATCTTCTAGGGACTCTGGTGCCCTAGGCATTCTTAAGTTAGAGGTGTGAC
TACTTGAGCGAATTGGGGGTTGAAGTCTCCAGGTAGCTGAAATTCTTTAGGAGTTTCTTCTGGA
GCAAGAGGTGCCTGAGGACCTCCAGCAACACAGGCCTCGTCTGATTTTCCAGTTCTCTGTTGAA
GGTCACCAGGCTCCCCTAGACTGGGCTTGATCCTTCCTGAGGGTCTTAAGTTCAACGAACTTGT
GTGCCCTAGGCAGACGCGCTAACGCAAAAATGCCAGACCGCCCGCTGCGCTCACTGGCGCGCTG
TGGTGACCGCGGGTGTGGCCTACGCCTTGTGGACCTACGTCTCCACCTTGAGCCCCACACCAGG
GCCATACCTGGCAGGATCCAGGGCCGCGGCTCCGGCGCGCGGGCGCGCGGGGGATAGAAAGGGA
AAGATGGCGACGGGGATAGAGAGGGGGAAGGCTAAGAAAGAGAGTCAAAGGTTTTCTCTGAGCT
CTAGGGAAACAGCGATAAAGGTAGAGAAGGAAAAAAGGAAGGACTTGGAAGTAAAAAGCAAAGA
GAAGGGGAAAGAGAAAGGGAAGGAAGAGGAGAAAAAGTCTGTAGAGGTGAAAAACAAGAAGAAA
GAAGTAGGGAAGGGAGAAGATAACGGGAAGGATGTAGGCCCGAAAATAGACCAAGGGAAAGAGA
AAGAAGAGGAGAAAAGAAAGAGTGCCGATGTGAAAACCAAGGAGAGTGGAAAAGACAATGGGAA
GGAAGAGGAGAAAAGGAAGGATGTCGATGTGAAATCCAAGGAAAACGTGAAAGAAGAAGAGAAA
AAGAAGAGTGTGGACCCGAAAACCAAGGAGAACGGGAAAGGGAAGGAGGAAGAGAAGAAGAGCA
TGGATCTGAAAACCAAGGAGAATGGGAAAGGGAAGGAGGAAGAGAAAAGACAGAGTGTGGACCC
GAAAACCAAGGAGAACGGGAAAGGGAAGGAGGAAGAGAAAAAGAAGAGCGTGGATCTGAAAACC
AAGGAGAACGGGAAAGGGAAGGAGGAAGAGAAAAGACAGAGTGTGGACCCGAAAACCAAGGAGA
ACGGGAAAGGGAAGGAGGAAGAGAAAAAACAGAGTGTGGACCCGAAAACCAAGGAGAACGGGAA
AGGGAAGGAGGAAGAGAAAAGACAGAGTGTGGACCCGAAAACCAAGGAGAACGGGAAAGGGAAG
GAGGAAGAGAAAAGACAGAGTGTGGACCCAAAAACCAAGGAGAACGGGAAAGGGAAGGAGGAAG
AGAAAAAGAAGAGCGTGGATCTGAAAACCAAGGAGAACGGGAAAGGGAAGGAGGAAGAGAAGAA
GAAGAGCATGGATCTGAAAACCAGGGTGTTCGGGAAAGGGAAGGAGGAAGAGAAGAAGAAGAGC
ATGGATCTGAAAACCAAGGAGAACGGGAAAGGGAAGGAGGAAGAGAAGAAGAAGAGCATGGATC
TGAAAACCAGGGTGTTTGGGAAAGGGAAGGAGGAAGAGAAGAAGAAGAGTGTGGATCTGAAAAC
CAAGGAGAATGGGAAAGGGAAGGAGGAAGAGAAGAAGAGCGTGGATCTGAAAACCAAGGAGAAC
GGGAAAGGGAAGGAGGAAGAGAAGAAGAGCGTGGATCTGAAAACCAAGGAGAACGGGAAAGGGA
AGGAGGAAGAGAAGAAGAGCGTGGATCTGAAAACCAAGGAGAACGGGAAAGGGAAGGAGGAGGA
GAAAAGACAGAGTGTGGGCCCGGAAACTGAGGAGGACGGGGAAGAGAAGGAAGAGGAGAAAAGA
CAGAGTGTGGGCCCGGAAACTGAGGAGGACGGGGAAGAGAAAGAAGAGGAGAAAATACAGAGTG
TGGACCTGAAAACCAAGGAGAACGGGAAAAGGGAGGAGGAAGAGAAAAAGGAAAATGACGTGGA
AGGCAAGGAGAATGGGTCAGGGTTGGAAGCCAAGAAGGAGCAAGGGACGGAGAAAGAGAAGGAA
CAGGTCACAGAACAGGTCAAGGAGAACAGCAGCACCTTCATTAAAACCCTGTACCCGCCGCCGG
TAAGAGACCTGGGACCGGGACTCTCGCTTCCGAGGCCACTGTGGGCATCCAGGCCCGCTAGCTC
TGTTACGTCGTCGCCGAACTACGCAGAGAACCGGGTCTTGTCAGCAGAGAACCGGGTCTTGTCA
GCAGAGAACCGGGTCTTGACCGCAGAGAACCGGATCTTGTCCGCAGAGAACCGGGTCTTGTCCG
AGGGCTTCTGTCTATGGATGAGGGGATGTGCCAAGGTGAAAAACAAGCAGATCCTAGTACTAGG
CCTGGATGGAGCAGGAAAGACCAGTGTCCTCCACTTCCTGGCTTCCAACACAGTCCGGCACAGC
ACAGCACCCACCCTAGGTTTCAATGCAGTTAACATCAGCTCTGAAGACAGGCAGATGGAGTTCC
TGGAGATCGGTGGCAGTGAGCCATTCCGCTCCTACTGGGACATGTACCTACCCAAGGGGTGGTT
GCTCATCTTTGTGGTAGACTCAGCTGATCATAAACGGTTACCCGAAGCCAAGAAATACCTTCAT
CAGCTAATTGATCCAAATCCAGACCTCCCTCTCGTTGTATTTGCCAACAAACAGAAGGATCTTG
AAGCCGCCTATCGAATTACAGATATCCACGATGCTTTGGCTCTGTCTGACGTGGGGAACGACAG
GAAGCTCTTCTTGTTTGGAACTCAGGTGACTAGGAATGGTTCAGAGATCCCCTCCATCATGCAA
GATGCCAAAGACCTAATTACACACCTGGCCATAAATATGTAGAAGTGACTAAGACCCGCCCGGC
CCTACTCAGCTCCCACCCAACCATCATCAGAGAGGGCTGAAAGGCAGGCTTACGCCAAAATTTC
CACTTTCAATAAAAAATAAGCCGTGCCTATTCTCTCAATGCAAAGCGTCCGTACGGAGAACACT
GGCCAATTGGCTAAGATTTTGGTGGGTTTTTGTTTTTTTTTTAAGACTTTTAACTTTAAAATTT
TAAAATTATTTTCTTTGAGAGGAATGTGGACTTTTGCTTTCCATGTTGAGAGTTGAACCCTGGG
CCTCAGACGT

hide sequence

RefSeq Acc Id:

XM_039091681 ⟹ XP_038947609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	31,514,779 - 31,521,038 (-)	NCBI
mRatBN7.2	14	31,160,508 - 31,166,719 (-)	NCBI

RefSeq Acc Id:

XM_039091682 ⟹ XP_038947610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	31,513,926 - 31,521,038 (-)	NCBI
mRatBN7.2	14	31,159,290 - 31,166,718 (-)	NCBI

RefSeq Acc Id:

XR_010057349

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	31,515,744 - 31,521,038 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_997624	(Get FASTA)	NCBI Sequence Viewer
	XP_017454588	(Get FASTA)	NCBI Sequence Viewer
	XP_038947609	(Get FASTA)	NCBI Sequence Viewer
	XP_038947610	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	DAA02250	(Get FASTA)	NCBI Sequence Viewer
	EDL89885	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000049745.2
	ENSRNOP00000085370
	ENSRNOP00000085370.2

RefSeq Acc Id:	NP_997624 ⟸ NM_212459
- UniProtKB:	A0A8I6A3R6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRGCAKVKNKQILVLGLDGAGKTSVLHFLASNTVRHSTAPTLGFNAVNISSEDRQMEFLEIGGS EPFRSYWDMYLPKGWLLIFVVDSADHKRLPEAKKYLHQLIDPNPDLPLVVFANKQDLEAAYRIT DIHDALALSDVGNDRKLFLFGTQVTRNGSEIPSIMQDAKDLITHLAINM hide sequence

RefSeq Acc Id:

XP_017454588 ⟸ XM_017599099

- Peptide Label:

isoform X1

- Sequence:

show sequence

MATGIERGKAKKESQRFSLSSRETAIKVEKEKRKDLEVKSKEKGKEKGKEEEKKSVEVKNKKKE
VGKGEDNGKDVGPKIDQGKEKEEEKRKSADVKTKESGKDNGKEEEKRKDVDVKSKENVKEEEKK
KSVDPKTKENGKGKEEEKKSMDLKTKENGKGKEEEKRQSVDPKTKENGKGKEEEKKKSVDLKTK
ENGKGKEEEKRQSVDPKTKENGKGKEEEKKQSVDPKTKENGKGKEEEKRQSVDPKTKENGKGKE
EEKRQSVDPKTKENGKGKEEEKKKSVDLKTKENGKGKEEEKKKSMDLKTRVFGKGKEEEKKKSM
DLKTKENGKGKEEEKKKSMDLKTRVFGKGKEEEKKKSVDLKTKENGKGKEEEKKSVDLKTKENG
KGKEEEKKSVDLKTKENGKGKEEEKKSVDLKTKENGKGKEEEKRQSVGPETEEDGEEKEEEKRQ
SVGPETEEDGEEKEEEKIQSVDLKTKENGKREEEEKKENDVEGKENGSGLEAKKEQGTEKEKEQ
VTEQVKENSSTFIKTLYPPPVRDLGPGLSLPRPLWASRPASSVTSSPNYAENRVLSAENRVLSA
ENRVLTAENRILSAENRVLSEGFCLWMRGCAKVKNKQILVLGLDGAGKTSVLHFLASNTVRHST
APTLGFNAVNISSEDRQMEFLEIGGSEPFRSYWDMYLPKGWLLIFVVDSADHKRLPEAKKYLHQ
LIDPNPDLPLVVFANKQKDLEAAYRITDIHDALALSDVGNDRKLFLFGTQVTRNGSEIPSIMQD
AKDLITHLAINM

hide sequence

Ensembl Acc Id:

ENSRNOP00000049745 ⟸ ENSRNOT00000044441

RefSeq Acc Id:	XP_038947610 ⟸ XM_039091682
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038947609 ⟸ XM_039091681
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000085370 ⟸ ENSRNOT00000108975

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6IMA9-F1-model_v2	AlphaFold	Q6IMA9	1-177	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699269

Promoter ID:

EPDNEW_R9793

Type:

initiation region

Name:

Arl9_1

Description:

ADP-ribosylation factor like GTPase 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	33,444,295 - 33,444,355	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303337	AgrOrtholog
BioCyc Gene	G2FUF-15972	BioCyc
Ensembl Genes	ENSRNOG00000029628	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044441.3	UniProtKB/TrEMBL
	ENSRNOT00000108975	ENTREZGENE
	ENSRNOT00000108975.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Arf-like_GTPase	UniProtKB/TrEMBL
	ARF/SAR	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP_bd	UniProtKB/TrEMBL
KEGG Report	rno:289565	UniProtKB/TrEMBL
NCBI Gene	289565	ENTREZGENE
PANTHER	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 9	UniProtKB/TrEMBL
	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 9-RELATED	UniProtKB/TrEMBL
Pfam	Arf	UniProtKB/TrEMBL
PhenoGen	Arl9	PhenoGen
PRINTS	SAR1GTPBP	UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029628	RatGTEx
SMART	ARF	UniProtKB/TrEMBL
	SAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I6A3R6	ENTREZGENE, UniProtKB/TrEMBL
	A6JCW3_RAT	UniProtKB/TrEMBL
	F7F2I5_RAT	UniProtKB/TrEMBL
	Q6IMA9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-11-07	Arl9	ARF like GTPase 9	Arl9	ADP-ribosylation factor like GTPase 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-11-19	Arl9	ADP-ribosylation factor like GTPase 9	Arl9	ADP-ribosylation factor-like 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Arl9	ADP-ribosylation factor-like 9			Symbol and Name status set to approved	1299863	APPROVED
2005-02-14	Arl9	ADP-ribosylation factor-like 9			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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