St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) - Rat Genome Database

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Advanced Search (OLGA)
Gene: St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) Rattus norvegicus
Analyze
Symbol: St3gal6
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 6
RGD ID: 1303279
Description: Predicted to enable N-acetyllactosaminide alpha-2,3-sialyltransferase activity. Predicted to be involved in cellular response to interleukin-6; glycolipid biosynthetic process; and protein glycosylation. Predicted to be located in Golgi membrane. Orthologous to human ST3GAL6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CMP-NeuAc:beta-galactoside alpha-2,3-sialyltransferase VI; sialyltransferase 10 (alpha-2,3-sialyltransferase VI); Siat10; ST3Gal VI; ST3GalVI; type 2 lactosamine alpha-2,3-sialyltransferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,530,120 - 55,590,950 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1155,530,248 - 55,598,720 (+)EnsemblGRCr8
mRatBN7.21142,061,282 - 42,121,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1150,825,401 - 50,869,574 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,486,970 - 43,531,142 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,615,593 - 42,659,766 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,176,518 - 44,237,119 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)Ensemblrn6Rnor6.0
Rnor_5.01147,366,048 - 47,426,612 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41142,893,712 - 42,937,792 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1141,876,333 - 41,920,495 (+)NCBICelera
RGSC_v3.11142,951,300 - 42,995,377 (+)NCBI
Cytogenetic Map11q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
Azoxymethane  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
clofibrate  (EXP)
cocaine  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
Evodiamine  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
L-ethionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
okadaic acid  (ISO)
omeprazole  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PD 0325901  (ISO)
perfluorohexanesulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
rimonabant  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zebularine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10206952   PMID:12477932   PMID:15843597   PMID:17944600   PMID:19199708   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
St3gal6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,530,120 - 55,590,950 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1155,530,248 - 55,598,720 (+)EnsemblGRCr8
mRatBN7.21142,061,282 - 42,121,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1150,825,401 - 50,869,574 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,486,970 - 43,531,142 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,615,593 - 42,659,766 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,176,518 - 44,237,119 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)Ensemblrn6Rnor6.0
Rnor_5.01147,366,048 - 47,426,612 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41142,893,712 - 42,937,792 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1141,876,333 - 41,920,495 (+)NCBICelera
RGSC_v3.11142,951,300 - 42,995,377 (+)NCBI
Cytogenetic Map11q12NCBI
ST3GAL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,732,262 - 98,795,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,732,175 - 98,821,201 (+)Ensemblhg38GRCh38
GRCh37398,451,106 - 98,514,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,934,262 - 99,995,927 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34399,934,261 - 99,995,924NCBI
Celera396,843,261 - 96,904,902 (+)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef395,823,269 - 95,886,702 (+)NCBIHuRef
CHM1_1398,414,233 - 98,477,819 (+)NCBICHM1_1
T2T-CHM13v2.03101,440,560 - 101,504,133 (+)NCBIT2T-CHM13v2.0
St3gal6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,290,105 - 58,344,614 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,288,488 - 58,344,606 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381658,469,742 - 58,524,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,468,125 - 58,524,243 (-)Ensemblmm10GRCm38
MGSCv371658,470,654 - 58,523,425 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361658,413,084 - 58,465,855 (-)NCBIMGSCv36mm8
Celera1658,755,151 - 58,808,030 (-)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.58NCBI
St3gal6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955427397,870 - 444,914 (+)Ensembl
ChiLan1.0NW_004955427397,870 - 450,187 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2296,682,241 - 96,748,939 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1396,687,012 - 96,754,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0395,833,529 - 95,897,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13102,515,153 - 102,579,599 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3102,515,185 - 102,578,843 (+)EnsemblpanPan2panpan1.1
ST3GAL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,572,228 - 5,631,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,604,628 - 5,630,703 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha335,722,885 - 5,791,963 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0335,710,802 - 5,780,056 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,711,625 - 5,766,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,583,701 - 5,665,729 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,646,526 - 5,716,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,923,257 - 5,992,594 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
St3gal6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602151,328,232 - 151,383,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366304,226,115 - 4,280,969 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366304,226,539 - 4,281,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13160,158,259 - 160,224,819 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113160,158,238 - 160,225,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213170,305,811 - 170,328,056 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,059,441 - 82,126,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,059,457 - 82,108,137 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604184,429,806 - 84,495,181 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478911,822,905 - 11,857,471 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478911,782,895 - 11,858,065 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
St3gal6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1442,459,534 - 42,492,143 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in St3gal6
133 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:330
Count of miRNA genes:215
Interacting mature miRNAs:255
Transcripts:ENSRNOT00000002255
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
11528648Bss118Bone structure and strength QTL 1186.6582e-07femur strength trait (VT:0010010)femur ultimate displacement (CMO:0002719)115410798756845449Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
BF387674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,095,278 - 42,095,462 (+)MAPPERmRatBN7.2
Rnor_6.01144,210,598 - 44,210,781NCBIRnor6.0
Rnor_5.01147,400,091 - 47,400,274UniSTSRnor5.0
RGSC_v3.41142,911,370 - 42,911,553UniSTSRGSC3.4
Celera1141,893,991 - 41,894,174UniSTS
RH 3.4 Map11310.8UniSTS
Cytogenetic Map11q12UniSTS
RH140152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,121,446 - 42,121,652 (+)MAPPERmRatBN7.2
Rnor_6.01144,236,771 - 44,236,976NCBIRnor6.0
Rnor_5.01147,426,264 - 47,426,469UniSTSRnor5.0
RGSC_v3.41142,937,455 - 42,937,660UniSTSRGSC3.4
Celera1141,920,158 - 41,920,363UniSTS
RH 3.4 Map11312.9UniSTS
Cytogenetic Map11q12UniSTS
RH141458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,120,807 - 42,121,024 (+)MAPPERmRatBN7.2
Rnor_6.01144,236,132 - 44,236,348NCBIRnor6.0
Rnor_5.01147,425,625 - 47,425,841UniSTSRnor5.0
RGSC_v3.41142,936,816 - 42,937,032UniSTSRGSC3.4
Celera1141,919,519 - 41,919,735UniSTS
RH 3.4 Map11312.9UniSTS
Cytogenetic Map11q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ626743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002255   ⟹   ENSRNOP00000002255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1155,530,248 - 55,591,563 (+)Ensembl
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)Ensembl
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166046   ⟹   ENSRNOP00000112224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1155,530,248 - 55,598,720 (+)Ensembl
RefSeq Acc Id: NM_207602   ⟹   NP_997485
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,546,788 - 55,590,950 (+)NCBI
mRatBN7.21142,077,621 - 42,121,784 (+)NCBI
Rnor_6.01144,192,940 - 44,237,108 (+)NCBI
Rnor_5.01147,366,048 - 47,426,612 (+)NCBI
RGSC_v3.41142,893,712 - 42,937,792 (+)RGD
Celera1141,876,333 - 41,920,495 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248209   ⟹   XP_006248271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,457 - 55,590,950 (+)NCBI
mRatBN7.21142,061,598 - 42,121,793 (+)NCBI
Rnor_6.01144,177,135 - 44,237,119 (+)NCBI
Rnor_5.01147,366,048 - 47,426,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248210   ⟹   XP_006248272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,372 - 55,590,950 (+)NCBI
mRatBN7.21142,061,282 - 42,121,793 (+)NCBI
Rnor_6.01144,176,518 - 44,237,119 (+)NCBI
Rnor_5.01147,366,048 - 47,426,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088384   ⟹   XP_038944312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,555,784 - 55,590,950 (+)NCBI
mRatBN7.21142,086,817 - 42,121,801 (+)NCBI
RefSeq Acc Id: XM_039088386   ⟹   XP_038944314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,555,784 - 55,590,950 (+)NCBI
mRatBN7.21142,086,817 - 42,121,801 (+)NCBI
RefSeq Acc Id: XM_039088387   ⟹   XP_038944315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,554,837 - 55,590,950 (+)NCBI
mRatBN7.21142,085,248 - 42,121,801 (+)NCBI
RefSeq Acc Id: XM_039088388   ⟹   XP_038944316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,760 - 55,586,868 (+)NCBI
mRatBN7.21142,061,586 - 42,117,703 (+)NCBI
RefSeq Acc Id: XM_039088389   ⟹   XP_038944317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,752 - 55,583,405 (+)NCBI
mRatBN7.21142,061,583 - 42,106,058 (+)NCBI
RefSeq Acc Id: XM_063270565   ⟹   XP_063126635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,120 - 55,590,950 (+)NCBI
RefSeq Acc Id: XM_063270566   ⟹   XP_063126636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,567,615 - 55,590,950 (+)NCBI
RefSeq Acc Id: XM_063270567   ⟹   XP_063126637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,530,424 - 55,583,405 (+)NCBI
RefSeq Acc Id: NP_997485   ⟸   NM_207602
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248272   ⟸   XM_006248210
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248271   ⟸   XM_006248209
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000002255   ⟸   ENSRNOT00000002255
RefSeq Acc Id: XP_038944317   ⟸   XM_039088389
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944316   ⟸   XM_039088388
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944315   ⟸   XM_039088387
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944312   ⟸   XM_039088384
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944314   ⟸   XM_039088386
- Peptide Label: isoform X1
- UniProtKB: P61943 (UniProtKB/Swiss-Prot),   Q569D2 (UniProtKB/TrEMBL),   F7F9B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126635   ⟸   XM_063270565
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126637   ⟸   XM_063270567
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126636   ⟸   XM_063270566
- Peptide Label: isoform X2
- UniProtKB: P61943 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000112224   ⟸   ENSRNOT00000166046

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61943-F1-model_v2 AlphaFold P61943 1-331 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303279 AgrOrtholog
BioCyc Gene G2FUF-21567 BioCyc
Ensembl Genes ENSRNOG00000001653 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000002255 ENTREZGENE
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7308841 IMAGE-MGC_LOAD
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot
  Glycosyltransferase_29 UniProtKB/Swiss-Prot
  GT29-like_sf UniProtKB/Swiss-Prot
  Sialyl_trans UniProtKB/Swiss-Prot
MGC_CLONE MGC:108513 IMAGE-MGC_LOAD
NCBI Gene 304023 ENTREZGENE
PANTHER SIALYLTRANSFERASE UniProtKB/Swiss-Prot
  TYPE 2 LACTOSAMINE ALPHA-2,3-SIALYLTRANSFERASE UniProtKB/Swiss-Prot
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot
PhenoGen St3gal6 PhenoGen
PIRSF Sialyl_trans UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001653 RatGTEx
UniProt A0ABK0LZU4_RAT UniProtKB/TrEMBL
  F7F9B2 ENTREZGENE, UniProtKB/TrEMBL
  P61943 ENTREZGENE
  Q569D2 ENTREZGENE, UniProtKB/TrEMBL
  SIA10_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 St3gal6  ST3 beta-galactoside alpha-2,3-sialyltransferase 6  Siat10  sialyltransferase 10 (alpha-2,3-sialyltransferase VI)  Symbol and Name updated 1299863 APPROVED
2005-09-30 Siat10        Symbol and Name status set to provisional 70820 PROVISIONAL