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Gene: Eml5 (EMAP like 5) Rattus norvegicus

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Symbol:

Eml5

Name:

EMAP like 5

RGD ID:

1303275

Description:

Predicted to enable microtubule binding activity. Predicted to be located in cilium; cytoplasm; and microtubule. Orthologous to human EML5 (EMAP like 5); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

echinoderm microtubule associated protein like 5; echinoderm microtubule-associated protein-like 5; EMAP-5; EMAP-like protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EML5 (EMAP like 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Eml5 (echinoderm microtubule associated protein like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Eml5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EML5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EML5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Eml5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EML5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EML5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Eml5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Eml5 (EMAP like 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EML6 (EMAP like 6)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	EML5 (EMAP like 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Eml5 (echinoderm microtubule associated protein like 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-1f12.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	elp-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	eml5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,775,269 - 123,905,585 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	123,776,368 - 123,905,538 (-)	Ensembl				GRCr8
mRatBN7.2	6	118,046,655 - 118,175,831 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	118,046,655 - 118,175,831 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	118,197,287 - 118,325,751 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	118,494,088 - 118,622,546 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,828,943 - 117,957,398 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,768,939 - 122,898,046 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,770,055 - 122,897,997 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	131,989,998 - 132,118,760 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	122,958,412 - 123,087,547 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	115,606,223 - 115,734,030 (-)	NCBI		Celera
RGSC_v3.1	6	122,973,904 - 123,091,229 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (EXP)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

coumarin (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

diquat (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

indole-3-methanol (EXP)

methimazole (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

permethrin (EXP)

phenobarbital (ISO)

potassium dichromate (ISO)

rotenone (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

tanespimycin (ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triadimefon (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cilium (IEA)

cytoskeleton (IEA)

microtubule (IEA)

Molecular Function

microtubule binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Eml5, a novel WD40 domain protein expressed in rat brain.	O'Connor V, etal., Gene 2004 Jul 7;336(1):127-37.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19056867	PMID:36307995

Genomics

Comparative Map Data

Eml5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,775,269 - 123,905,585 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	123,776,368 - 123,905,538 (-)	Ensembl				GRCr8
mRatBN7.2	6	118,046,655 - 118,175,831 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	118,046,655 - 118,175,831 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	118,197,287 - 118,325,751 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	118,494,088 - 118,622,546 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,828,943 - 117,957,398 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,768,939 - 122,898,046 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,770,055 - 122,897,997 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	131,989,998 - 132,118,760 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	122,958,412 - 123,087,547 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	115,606,223 - 115,734,030 (-)	NCBI		Celera
RGSC_v3.1	6	122,973,904 - 123,091,229 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

EML5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	88,612,431 - 88,792,953 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	88,612,240 - 88,792,994 (-)	Ensembl			hg38	GRCh38
GRCh37	14	89,078,775 - 89,259,297 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	88,150,954 - 88,328,910 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	88,150,956 - 88,328,910	NCBI
Celera	14	69,126,811 - 69,307,471 (-)	NCBI		Celera
Cytogenetic Map	14	q31.3	NCBI
HuRef	14	69,251,426 - 69,434,464 (-)	NCBI		HuRef
CHM1_1	14	89,019,033 - 89,196,906 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	82,833,321 - 83,016,566 (-)	NCBI		T2T-CHM13v2.0

Eml5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	98,752,863 - 98,867,770 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	98,753,064 - 98,867,743 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	98,786,604 - 98,901,511 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	98,786,805 - 98,901,484 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	100,024,814 - 100,139,694 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	99,187,654 - 99,302,534 (-)	NCBI		MGSCv36	mm8
Celera	12	100,012,303 - 100,127,197 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	49.88	NCBI

Eml5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	11,226,458 - 11,353,129 (-)	Ensembl
ChiLan1.0	NW_004955438	11,225,910 - 11,366,996 (-)	NCBI	ChiLan1.0	ChiLan1.0

EML5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	89,762,137 - 89,942,940 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	88,978,644 - 89,159,447 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	69,233,075 - 69,416,483 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	88,590,141 - 88,772,323 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	88,590,141 - 88,774,705 (-)	Ensembl			panPan2	panpan1.1

EML5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	59,850,400 - 60,033,245 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	59,853,379 - 60,033,906 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	59,428,164 - 59,610,985 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	60,119,892 - 60,302,646 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	60,119,984 - 60,303,239 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	59,798,834 - 59,981,830 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	59,844,113 - 60,032,955 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	60,178,155 - 60,361,241 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Eml5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	15,828,780 - 16,010,646 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	16,062,766 - 16,240,188 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	16,061,132 - 16,240,182 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EML5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	110,512,079 - 110,705,441 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	110,511,937 - 110,705,452 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	117,009,391 - 117,173,408 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EML5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	66,249,880 - 66,451,844 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	66,253,225 - 66,451,463 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	53,608,870 - 53,799,753 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Eml5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	13,530,532 - 13,732,868 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	13,530,116 - 13,733,022 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Eml5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	111,943,713 - 112,062,876 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Eml5
1059 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	115
Count of miRNA genes:	101
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000005978, ENSRNOT00000057601
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

RH131268

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	118,045,603 - 118,045,788 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	122,769,004 - 122,769,188	NCBI	Rnor6.0
Rnor_5.0	6	131,990,335 - 131,990,519	UniSTS	Rnor5.0
RGSC_v3.4	6	122,958,477 - 122,958,661	UniSTS	RGSC3.4
Celera	6	115,605,172 - 115,605,356	UniSTS
RH 3.4 Map	6	870.1	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH137891

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	118,057,458 - 118,057,624 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	122,780,859 - 122,781,024	NCBI	Rnor6.0
Rnor_5.0	6	132,002,190 - 132,002,355	UniSTS	Rnor5.0
RGSC_v3.4	6	122,970,332 - 122,970,497	UniSTS	RGSC3.4
Celera	6	115,617,027 - 115,617,192	UniSTS
RH 3.4 Map	6	870.39	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	11	66	163	89	88	57	77	57	6	332	175	10	142	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003750213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC117104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY445136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057601 ⟹ ENSRNOP00000054411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,776,368 - 123,905,538 (-)	Ensembl
mRatBN7.2 Ensembl	6	118,046,655 - 118,175,831 (-)	Ensembl
Rnor_6.0 Ensembl	6	122,770,055 - 122,897,997 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096031 ⟹ ENSRNOP00000093290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,776,368 - 123,905,538 (-)	Ensembl
mRatBN7.2 Ensembl	6	118,046,655 - 118,175,831 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114559 ⟹ ENSRNOP00000096447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	118,047,104 - 118,175,831 (-)	Ensembl

RefSeq Acc Id:

NM_001003402 ⟹ NP_001003402

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,776,368 - 123,905,538 (-)	NCBI
mRatBN7.2	6	118,046,655 - 118,175,831 (-)	NCBI
Rnor_6.0	6	122,770,055 - 122,897,997 (-)	NCBI
Rnor_5.0	6	131,989,998 - 132,118,760 (-)	NCBI
Celera	6	115,606,223 - 115,734,030 (-)	NCBI

Sequence:

show sequence

CCTGAGCGCCGCAGGTGACCCGGGCAGGGAGTCCGGTGCGCGGAGCCGGCTGAGAAGGAGCAGG
CTGGAGGCGGGTCCCCGTCCCCCCTCTTAGCTTGGTTGTCTCCTAGCCTAGGCACTGGGCTGAG
GGGACACGGCGAGCTCCCAGACGCGCGAGGCTCCCGGACGGCCGGCGGCGCTCGCGGCCCTCAG
CATGTTTGGTGAGGCGAGGCTTTTCCTCCCGCCCGTGGGCTGAGGCGACGACGGCGGCCACGCA
AGCGAGATGCACCTGCCGGGCTCGGCTTAGAGGAGCGTCCCGGCCGCCAGCGGGAGAGCTTTCG
TCACCCGGCCCCGGCGGCGATCGCGGGCCCGAGCCGCAGCGACGGGTGGGCGCACGGACATGGC
GGCTCGGAGCGCCCCGAGCTGCCACCTGCGGCTCGAGTGGGTGTACGGCTACCGGGGCCACCAG
TGCCGCAACAACCTCTACTACACCGCGGCCAAGGAGATCGTGTACTTCGTGGCGGGGGTCGGCG
TCGTGTATAGCCCGCGGGAGCATCGGCAGAAGTTCTACCGCGGCCACAGCGACGACATCATCAG
TCTCGCACTGCATCCTGAGCGCGTGTTGGTAGCAACAGGACAAGTTGGGAAAGAGCCTTACATC
TGTGTTTGGGATTCTTACACGGTCCAGACTGTGTCGGTTCTGAAGGACGTTCATACACATGGTA
TAGCTTGTTTAGCATTTGACTTGGATGGACAGCGCTTAGTTTCAGTTGGACTCGATTCAAAGAA
TGCAGTTTGTGTTTGGGACTGGAAAAGGGGGAAAATGCTGTCTATGGCTCCTGGTCACACAGAC
AGAATATTTGATATTTCTTGGGATTTGTACCAGCCAAATAAGCTCGTCAGCTGCGGTGTTAAAC
ACATCAAGTTCTGGAGTTTGTGTGGAAATGCTCTGACCCCAAAACGAGGAGTTTTTGGTAAAAC
AGGTGACCTTCAGACAATATTGTGCCTAGCCTGTGCTCGGGACGAATTAACATATTCTGGTGCA
CTCAATGGCGATATATATGTTTGGAAAGGAATCAATCTTATACGAACAATACAAGGAGCCCATA
CTGCAGGGATTTTTAGTATGAATGCTTGTGAAGAAGGCTTTGCTACTGGAGGCAGAGATGGCTG
TATTCGTCTTTGGGATTTAACTTTTAAACCAATTACTGTGATTGATCTCAGGGAAACAGAACAG
GGATACAAAGGTTTATCTGTGAGGAGTGTTTGTTGGCGAGGTGACCACATTTTAGTGGGAACAC
AGGACAGTGAAATTTTTGAAATTGTTGTGCATGAAAGAAATAAACCTTTCCTAATTATGCAAGG
GCATTGCGAAGGTGAACTTTGGGCGCTTGCTGTTCACCCTACTAAGCCTTTGGCTGTAACCGGA
AGTGATGATCGTTCAGTCAGGATTTGGAGCCTTGTAGATCATGCTCTAATAGCGAGATGTAATA
TGGACGAGCCAATCCGATGTGCCGCTGTCAATGCCGACGGAGTCCACCTCGCCCTTGGAATGAA
GGATGGGTCACTCACTGTCCTTAGAGTGAGAGATATGACTGAAGTTGTACATATTAAAGACAGG
AAAGAAGCAATCCATGAGCTGAAATATTCTCCAGATGGCACTTACCTTGCGGTTGGCTGCAATG
ACAGCTCAGTTGACATCTATGGAGTTGCTCAGCGTTACAAAAAAGTGGGTGAATGCGTCGGTTC
CCTTAGCTTCATCACTCATTTGGATTGGTCTTCAGACAGTAAATACTTACAGACAAATGACGGC
AGTGGGAAACGACTTCTCTACAAGATGCCAGGAGGAAAGGAAGTGACAAGCAAAGAAGAAGTAA
AAGGCATGCACTGGGCTTCATGGACGTGTGTTGCAGGCCTTGAAGTCAATGGAATTTGGCCCAA
GTATTCTGACATCAATGATATAAACTCAGTAGATGGAAACTATGTTGGCCAGGTTTTAGTTACA
GCTGATGACTATGGAGTTGTAAAATTATTCCGATATCCATGTTTAAGAAAAGGGGCCAAGTTCA
GAAAATACATTGGCCATTCAGCTCATGTAACTAATGTCAGATGGTCACATGATTACCAGTGGGT
TATTTCTATTGGTGGAGCGGATCACTCTGTCTTTCAGTGGAAATTTATTCCTGAGAGAAAATTA
AAAGATGCTCTTCACATAGCACCGCAAGAAAGTCTGACTGAGTCCAACAGCGATGAATCAGATT
CAGATCTGTCTGATGTTCCGGAACTAGATTCTGAGATTGAGCAAGAGACACAGCTTACTTACCA
CCGGCAGGTTTACAAAGAAGATCTACCTCAACTCAAAGAACAATGCAAAGAGAAGCAGAAAAGT
GCTACTTCTAAACGAAGAGAACGTGCTCCAGGAAATAGTATTCGATTACACTTCATTCATGGTT
ACAGAGGTTATGACTGTCGAAGCAATCTTTTCTACACTCAAATTGGTGAAATTGTGTACCATGT
AGCAGCAGTGGGTGTCATATATAATAGACAACAGAACACTCAGCGTTTTTACTTGGGTCATGAT
GATGATATCCTGTGTCTGGCTATTCATCCTTTGAAAGACTATGTGGCAACAGGCCAGGTTGGTA
GAGATCCCTCAATTCACGTCTGGGACACAGAAACCATTAAACCATTGTCTATATTAAAGGGCTA
CCACCAATATGGCATCTGTGCTGTGGATTTCTCAGCTGATGGGAAACGCCTAGCTTCAGTTGGA
ATAGATGACAGCCACACCATTGTATTGTGGGATTGGAAGAAAGGGGAGAAACTTTCAGTGGCAA
GAGGCAGTAAAGATAAGATTTTTGTTGTGAAAATGAACCCCTATGTGCCTGATAAACTAATTAC
AGCTGGGATTAAACACATGAAATTTTGGCGTAGAGCAGGGGGAGGGCTAATTGGAAGAAAAGGC
TACGTCGGCACTCTGGGGAAAAATGACACAATGATGTGTGCAGTGTATGGATGGACTGAAGAGA
TGGCTTTTTCTGGAACATCCACAGGAGATGTATGCATCTGGAGAGATGTCTTTCTTGTAAAAAC
AGTTAAAGCCCATGATGGGCCCGTGTTCAGTATGCACGCATTGGAGAAAGGATTTGTAACTGGA
GGAAAAGATGGCGTGGTAGCCCTTTGGGATGATTCCTTTGAAAGATGTCTCAAGACTTATGCTA
TAAAAAGAGCTGATTTAGCCCCAGGATCTAAAGGTCTGCTCTTGGAAGATAACCCATCTATACG
TGCCATATCATTAGGACATGGTCATATTCTGGTTGGCACAAAGAACGGTGAGATATTGGAAGTG
GATAAAAGTGGCCCAGTCACTCTGCTGGTCCAGGGACACATGGAAGGAGAGGTGTGGGGTTTGG
CCACACATCCTTATCTGCCCATCTGTGCTACTGTAAGTGATGATAAGACCTTAAGAATATGGGA
TCTCTCTCCTAGTCATTGTATGTTGGCAGTCCGGAAACTGAAGAAGGGTGGGCGGTGCTGCTGC
TTTTCCCCTGATGGCAAAGCTTTGGCTGTAGGACTCAATGATGGAAGCTTCTTGATGGCCAACG
CAGACACTCTAGAGGATCTTGTGTCCTTTCACCACAGAAAAGATGTTATTTCAGACATCCAGTT
TTCACCTGGTTCTGGGAAATACCTCGCTGTGGCGTCCCATGACAGCTTCGTTGATATATACAAT
GTGACAAGTAGCAAGCGAGTGGGAGTTTGCAAAGGAGCAACAAGCTACATCACCCACATCGACT
GGGACAGCAGAGGAAAGCTTTTACAGGTCAACACTGGTGCTAAAGAACAGCTATTCTTCGAAGC
TCCCAGAGGGAAAAAACAAACCATCCCCAGTGTGGAGGTGGAAAAAATTAGTTGGGCGACATGG
ACAAGTGTTCTTGGTTTATGTTGTGAGGGAATTTGGCCAATAATTGGAGAAGTCACAGATGTAA
CCGCCTCTTGCCTCACCAGTGACAAAATGGTCCTAGCTACAGGGGATGACTTGGGATTCGTGAA
GCTGTTCAGATACCCAGCTAAAGGAAAATTTGGAAAGTTTAAGAAGTATGTGGCTCACAGCACA
CACGTCACAAATGTTCGCTGGACTTACGATGACAGCATGCTGGTTACCCTGGGAGGAGCAGATA
TGTCCTTAATGGTATGGACAAGTGAAGTGGAGAGACATCGGGAAAAGAAGAACTGTGACAGTGA
AGAGTCTGATACAGATTCTGAAGAAGATGGAGGCTATGACAGCGATGTTACAAGAGAGAATGAA
ATTAGCTACACCATCAGAGCCTTATCAACTAATATCCGCCCAATGTTTGGAGTCAAGCCTCATT
TGCAACAGAAAGAGCCCTCAGTTGATGAAAGACAGGGGGTAGTAAGAGGATCCAGGCCTCCAGT
GAGTAGGGCCCCACCACAGCCCGAGAAACTTCAGTCAAACAATGTAGGCAAGAAGAAGAGACCC
ATAGAGGACCTTGTGTTGGAGCTCGCTTTTGGCTATCGGGGCAGAGACTGCAGGAACAATGTGC
ACTACTTAAATGACGGTGATGATATAATTTATCACACCGCCTCTGTTGGAATTCTGCACAATGT
TGCCACAGGGACTCAGAGTTTTTATCAAGAGCATAATGATGATATTCTGTGCCTCACTGTAAAT
CAGCACCCCAAGTTTATCAACATAGTGGCAACTGGCCAAGTAGGTGATTCTGCAGACATGTCAG
CTACAGCCCCATCTGTCCACATCTGGGATGCAGTGAACAAGCAGACATTGTCTATACTAAGATG
CTCCCATTCAAAGGGCGTGTGTTCTGTCAGCTTCAGTGCTACTGGGAAGCTGCTGCTGTCTGTA
GGGCTAGACCCAGAGCACACTGTTACCATTTGGAGATGGCAGGAAGGGGCCAAAATTGCCAGCA
GAGGTGGGCACAACCAACGTATTTTTGTAGCAGAATTTCGACCAGATTCAGATACCCAGTTTGT
CTCTGTGGGTATAAAGCACGTGAAGTTCTGGACCCTGGCAGGAAGGGCTCTTCTCAGCAAAAAG
GGGCTTCTGAGCACCCTGGAGGATGCCCGGATGCAGACGATGCTCGCTGTTGCATTTGGTGCAA
ATAACTTGACGTTTACAGGTACCATCAGTGGTGATGTCTGTGTGTGGAAAGATCACATATTGTG
TAGAGTGGTGGCTAGAGCACACAATGGGCCTGTGTTTGCCATGTACACCACCCTGCGAGATGGA
CTGATTGTGACCGGTGGCAAAGAAAGGCCGTCAAAGGAAGGAGGTGCGGTTAAACTGTGGGATC
AGGAACTGCGGCGATGCCGGGCCTTCAGGCTTGAGACGGGACAAGTCACAGATTGTGTTCGGTC
TGTGTGCAGAGGCAAAGGCAAGATACTAGTTGGAACAAGGAATTCGGAAATAATTGAAGTTGGG
GAGAAAAATGCAGCATGTAACATTTTAGTTAATGGTCATGTGGATGGACCAATCTGGGGACTAG
CAACACATCCTTCCAGGGATTTCTTCCTTTCTGCTGCTGAAGATGGAACAGTGAGACTCTGGGA
CATTGCTGATAAAAAGATGCTAAACAAAGTGAATTTGGGACATGCTGCTCGGACAGTATGTTAC
AGCCCCGAAGGCGACATGGTGGCTATTGGAATGAAAAATGGAGAATTTATTATATTACTTGTGA
GTTCTCTAAAAATATGGGGAAAGAAGAGAGACAGGCGATGTGCAATCCATGATATCAGATTTAG
TCCAGATTCCCGGTATTTGGCAGTGGGTTCCAGTGAGAACTCGGTGGACTTTTATGACCTGACA
TTGGGTCCCACCCTTAACAGAATCAGCTACTGCAAAGACATTCCAAGCTTTGTCATTCAGATGG
ACTTCTCTGCAGATAGCAGACATCTCCAGGTTTCTAGTGGCTGCTATAAACGGCATGTCTATGA
AGTGCCTTCAGGAAAACACCTTGTGGATCATGCTGCCATTGACAGGATCACGTGGGCTACCTGG
ACTAGTATTCTAGGTGATGAAGTTATGGGAATCTGGTCCAGACATGCTGAGAAGGCAGATGTCA
CCTGTGCCTGTGTGTCTCACTCAGGAATCAGCCTTGTGACAGGAGATGACTTTGGCATGGTTAA
ATTATATGACTTTCCATGCCCAGAAAAATTTGCAAAACACAAGAGGTTCTTGGGTCATTCCCCT
CATGTGACAAATATTCGATTTACCAGTGGTGATCGACATGTTGTCAGTGCTGGAGGCGATGACT
GCAGCTTGCTTGTCTGGAAATGTGTACACACGCCTCATTGAAAGTTACGATGCTGAGAAGACTA
AACAAATCTCACCTCAAGAGAGCAGTTCCACGTCGGAAAAACCAAAACCAAACTGTGTGGTCAA
GTGGTGCTAACTGAAGACTGTGACAGGGAGGGATGTCCAGAATCATCCACACAGCAGCAGACAG
TTCAAAATGCTTGCTGTGCGTACCAACCCATAGTCCACACACTGCCAGATAATTACACTACAAG
GAATGACTGAGC

hide sequence

RefSeq Acc Id:

XM_063262248 ⟹ XP_063118318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262249 ⟹ XP_063118319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262250 ⟹ XP_063118320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262251 ⟹ XP_063118321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262252 ⟹ XP_063118322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,777,747 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262253 ⟹ XP_063118323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,777,581 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262254 ⟹ XP_063118324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,783,422 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262255 ⟹ XP_063118325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,863,570 (-)	NCBI

RefSeq Acc Id:

XM_063262256 ⟹ XP_063118326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,786,053 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262257 ⟹ XP_063118327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,789,294 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XM_063262258 ⟹ XP_063118328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,847,661 (-)	NCBI

RefSeq Acc Id:

XM_063262259 ⟹ XP_063118329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,775,269 - 123,835,260 (-)	NCBI

RefSeq Acc Id:

XM_063262260 ⟹ XP_063118330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,817,044 - 123,905,585 (-)	NCBI

RefSeq Acc Id:

XR_010052132

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,802,116 - 123,905,585 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001003402	(Get FASTA)	NCBI Sequence Viewer
	XP_063118318	(Get FASTA)	NCBI Sequence Viewer
	XP_063118319	(Get FASTA)	NCBI Sequence Viewer
	XP_063118320	(Get FASTA)	NCBI Sequence Viewer
	XP_063118321	(Get FASTA)	NCBI Sequence Viewer
	XP_063118322	(Get FASTA)	NCBI Sequence Viewer
	XP_063118323	(Get FASTA)	NCBI Sequence Viewer
	XP_063118324	(Get FASTA)	NCBI Sequence Viewer
	XP_063118325	(Get FASTA)	NCBI Sequence Viewer
	XP_063118326	(Get FASTA)	NCBI Sequence Viewer
	XP_063118327	(Get FASTA)	NCBI Sequence Viewer
	XP_063118328	(Get FASTA)	NCBI Sequence Viewer
	XP_063118329	(Get FASTA)	NCBI Sequence Viewer
	XP_063118330	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAS01608	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054411
	ENSRNOP00000093290
GenBank Protein	Q6ED65	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001003402 ⟸ NM_001003402

- UniProtKB:

Q6ED65 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAARSAPSCHLRLEWVYGYRGHQCRNNLYYTAAKEIVYFVAGVGVVYSPREHRQKFYRGHSDDI
ISLALHPERVLVATGQVGKEPYICVWDSYTVQTVSVLKDVHTHGIACLAFDLDGQRLVSVGLDS
KNAVCVWDWKRGKMLSMAPGHTDRIFDISWDLYQPNKLVSCGVKHIKFWSLCGNALTPKRGVFG
KTGDLQTILCLACARDELTYSGALNGDIYVWKGINLIRTIQGAHTAGIFSMNACEEGFATGGRD
GCIRLWDLTFKPITVIDLRETEQGYKGLSVRSVCWRGDHILVGTQDSEIFEIVVHERNKPFLIM
QGHCEGELWALAVHPTKPLAVTGSDDRSVRIWSLVDHALIARCNMDEPIRCAAVNADGVHLALG
MKDGSLTVLRVRDMTEVVHIKDRKEAIHELKYSPDGTYLAVGCNDSSVDIYGVAQRYKKVGECV
GSLSFITHLDWSSDSKYLQTNDGSGKRLLYKMPGGKEVTSKEEVKGMHWASWTCVAGLEVNGIW
PKYSDINDINSVDGNYVGQVLVTADDYGVVKLFRYPCLRKGAKFRKYIGHSAHVTNVRWSHDYQ
WVISIGGADHSVFQWKFIPERKLKDALHIAPQESLTESNSDESDSDLSDVPELDSEIEQETQLT
YHRQVYKEDLPQLKEQCKEKQKSATSKRRERAPGNSIRLHFIHGYRGYDCRSNLFYTQIGEIVY
HVAAVGVIYNRQQNTQRFYLGHDDDILCLAIHPLKDYVATGQVGRDPSIHVWDTETIKPLSILK
GYHQYGICAVDFSADGKRLASVGIDDSHTIVLWDWKKGEKLSVARGSKDKIFVVKMNPYVPDKL
ITAGIKHMKFWRRAGGGLIGRKGYVGTLGKNDTMMCAVYGWTEEMAFSGTSTGDVCIWRDVFLV
KTVKAHDGPVFSMHALEKGFVTGGKDGVVALWDDSFERCLKTYAIKRADLAPGSKGLLLEDNPS
IRAISLGHGHILVGTKNGEILEVDKSGPVTLLVQGHMEGEVWGLATHPYLPICATVSDDKTLRI
WDLSPSHCMLAVRKLKKGGRCCCFSPDGKALAVGLNDGSFLMANADTLEDLVSFHHRKDVISDI
QFSPGSGKYLAVASHDSFVDIYNVTSSKRVGVCKGATSYITHIDWDSRGKLLQVNTGAKEQLFF
EAPRGKKQTIPSVEVEKISWATWTSVLGLCCEGIWPIIGEVTDVTASCLTSDKMVLATGDDLGF
VKLFRYPAKGKFGKFKKYVAHSTHVTNVRWTYDDSMLVTLGGADMSLMVWTSEVERHREKKNCD
SEESDTDSEEDGGYDSDVTRENEISYTIRALSTNIRPMFGVKPHLQQKEPSVDERQGVVRGSRP
PVSRAPPQPEKLQSNNVGKKKRPIEDLVLELAFGYRGRDCRNNVHYLNDGDDIIYHTASVGILH
NVATGTQSFYQEHNDDILCLTVNQHPKFINIVATGQVGDSADMSATAPSVHIWDAVNKQTLSIL
RCSHSKGVCSVSFSATGKLLLSVGLDPEHTVTIWRWQEGAKIASRGGHNQRIFVAEFRPDSDTQ
FVSVGIKHVKFWTLAGRALLSKKGLLSTLEDARMQTMLAVAFGANNLTFTGTISGDVCVWKDHI
LCRVVARAHNGPVFAMYTTLRDGLIVTGGKERPSKEGGAVKLWDQELRRCRAFRLETGQVTDCV
RSVCRGKGKILVGTRNSEIIEVGEKNAACNILVNGHVDGPIWGLATHPSRDFFLSAAEDGTVRL
WDIADKKMLNKVNLGHAARTVCYSPEGDMVAIGMKNGEFIILLVSSLKIWGKKRDRRCAIHDIR
FSPDSRYLAVGSSENSVDFYDLTLGPTLNRISYCKDIPSFVIQMDFSADSRHLQVSSGCYKRHV
YEVPSGKHLVDHAAIDRITWATWTSILGDEVMGIWSRHAEKADVTCACVSHSGISLVTGDDFGM
VKLYDFPCPEKFAKHKRFLGHSPHVTNIRFTSGDRHVVSAGGDDCSLLVWKCVHTPH

hide sequence

Ensembl Acc Id:

ENSRNOP00000054411 ⟸ ENSRNOT00000057601

Ensembl Acc Id:

ENSRNOP00000093290 ⟸ ENSRNOT00000096031

Ensembl Acc Id:

ENSRNOP00000096447 ⟸ ENSRNOT00000114559

RefSeq Acc Id:	XP_063118321 ⟸ XM_063262251
- Peptide Label:	isoform X4
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118319 ⟸ XM_063262249
- Peptide Label:	isoform X2
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118320 ⟸ XM_063262250
- Peptide Label:	isoform X3
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118318 ⟸ XM_063262248
- Peptide Label:	isoform X1
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118325 ⟸ XM_063262255
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6GK80 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118328 ⟸ XM_063262258
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063118329 ⟸ XM_063262259
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063118323 ⟸ XM_063262253
- Peptide Label:	isoform X6
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118322 ⟸ XM_063262252
- Peptide Label:	isoform X5
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118324 ⟸ XM_063262254
- Peptide Label:	isoform X7
- UniProtKB:	Q6ED65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063118326 ⟸ XM_063262256
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063118327 ⟸ XM_063262257
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063118330 ⟸ XM_063262260
- Peptide Label:	isoform X13
- UniProtKB:	A6JEF3 (UniProtKB/TrEMBL)

Protein Domains

Echinoderm microtubule-associated protein-like first EML-like second beta-propeller

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6ED65-F1-model_v2	AlphaFold	Q6ED65	1-1977	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694771

Promoter ID:

EPDNEW_R5295

Type:

single initiation site

Name:

Eml5_1

Description:

echinoderm microtubule associated protein like 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	122,898,031 - 122,898,091	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303275	AgrOrtholog
BioCyc Gene	G2FUF-36533	BioCyc
Ensembl Genes	ENSRNOG00000004207	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000057601	ENTREZGENE
	ENSRNOT00000096031	ENTREZGENE
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot
InterPro	Beta-prop_EML-like_2nd	UniProtKB/Swiss-Prot
	Beta-prop_EML_1st	UniProtKB/Swiss-Prot
	HELP	UniProtKB/Swiss-Prot
	Quinoprotein_ADH-like_supfam	UniProtKB/Swiss-Prot
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot
	WD40_repeat	UniProtKB/Swiss-Prot
	WD40_repeat_CS	UniProtKB/Swiss-Prot
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot
	WD_repeat_EMAP	UniProtKB/Swiss-Prot
NCBI Gene	444982	ENTREZGENE
PANTHER	ECHINODERM MICROTUBULE-ASSOCIATED PROTEIN-LIKE 5	UniProtKB/Swiss-Prot
	WD-40 REPEAT PROTEIN	UniProtKB/Swiss-Prot
Pfam	Beta-prop_EML	UniProtKB/Swiss-Prot
	Beta-prop_EML_2	UniProtKB/Swiss-Prot
	HELP	UniProtKB/Swiss-Prot
PhenoGen	Eml5	PhenoGen
PROSITE	WD_REPEATS_1	UniProtKB/Swiss-Prot
	WD_REPEATS_2	UniProtKB/Swiss-Prot
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004207	RatGTEx
SMART	WD40	UniProtKB/Swiss-Prot
Superfamily-SCOP	NHL repeat	UniProtKB/Swiss-Prot
	SSF50978	UniProtKB/Swiss-Prot
	SSF50998	UniProtKB/Swiss-Prot
	TolB, C-terminal domain	UniProtKB/Swiss-Prot
UniProt	A0A8I6GK80	ENTREZGENE, UniProtKB/TrEMBL
	A6JEF3	ENTREZGENE, UniProtKB/TrEMBL
	EMAL5_RAT	UniProtKB/Swiss-Prot
	F1LSA8_RAT	UniProtKB/TrEMBL
	Q6ED65	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-12-04	Eml5	EMAP like 5	Eml5	echinoderm microtubule associated protein like 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Eml5	echinoderm microtubule associated protein like 5			Symbol and Name status set to approved	1299863	APPROVED
2005-07-14	Eml5	echinoderm microtubule associated protein like 5			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains 11 WD40 domains, HELP domains, three hydrophobic stretches, a dimerization domain and appears to be present as two tandem repeats of sea urchin EMAP protein	1304007
gene_expression	highly expressed in hippocampus, cerebellum and olfactory bulb; expressed in forebrain and hindbrain structures during embryonic development	1304007
gene_homology	homologous to EMAP protein of sea urchin embryos which associates with microtubules	1304007

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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