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Gene: Slc38a7 (solute carrier family 38, member 7) Rattus norvegicus

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Symbol:

Slc38a7

Name:

solute carrier family 38, member 7

RGD ID:

1303268

Description:

Predicted to enable L-asparagine:sodium symporter activity and L-glutamine:sodium symporter activity. Predicted to be involved in amino acid transmembrane transport; neutral amino acid transport; and sodium ion transport. Predicted to be located in axon; lysosomal membrane; and neuronal cell body. Predicted to be active in membrane. Orthologous to human SLC38A7 (solute carrier family 38 member 7); INTERACTS WITH 1-benzylpiperazine; 3-chloropropane-1,2-diol; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

amino acid transporter; LOC291840; MGC105833; putative sodium-coupled neutral amino acid transporter 7; sodium-coupled neutral amino acid transporter 7; solute carrier family 38 member 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC38A7 (solute carrier family 38 member 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc38a7 (solute carrier family 38, member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc38a7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC38A7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC38A7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc38a7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC38A7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC38A7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc38a7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc38a7 (solute carrier family 38 member 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KIF13B (kinesin family member 13B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC38A7 (solute carrier family 38 member 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc38a7 (solute carrier family 38, member 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc38a7 (solute carrier family 38 member 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AVT7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	AVT7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AVT5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	AVT5	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	AVT6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AVT6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	slc38a7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc38a7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,215,336 - 9,231,592 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	9,215,383 - 9,231,589 (+)	Ensembl				GRCr8
mRatBN7.2	19	9,209,203 - 9,225,472 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,209,257 - 9,225,454 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	9,177,964 - 9,192,877 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	9,944,782 - 9,959,695 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,231,088 - 9,246,002 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	9,622,594 - 9,638,221 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	9,622,611 - 9,638,222 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	9,607,716 - 9,623,404 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	9,664,603 - 9,681,055 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,107,765 - 9,121,788 (+)	NCBI		Celera
RGSC_v3.1	19	9,670,000 - 9,685,871 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-benzylpiperazine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

diclofenac (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

fenthion (ISO)

gentamycin (EXP)

Heliotrine (EXP)

hydrogen chloride (ISO)

indometacin (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

N(4)-hydroxycytidine (ISO)

paracetamol (ISO)

rotenone (EXP)

Senkirkine (EXP)

sevoflurane (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid transmembrane transport (IBA)

amino acid transport (IEA)

asparagine transport (IEA,ISO,ISS)

glutamine transport (IEA,ISO,ISS)

monoatomic cation transmembrane transport (IEA)

monoatomic ion transport (IEA)

sodium ion transport (IEA,ISO,ISS)

Cellular Component

axon (IEA,ISO,ISS)

lysosomal membrane (IEA,ISO,ISS)

membrane (IBA)

neuronal cell body (IEA,ISO,ISS)

Molecular Function

L-asparagine transmembrane transporter activity (IBA)

L-asparagine:sodium symporter activity (IEA,ISO,ISS)

L-glutamine transmembrane transporter activity (IBA)

L-glutamine:sodium symporter activity (IEA,ISO,ISS)

monoatomic cation transmembrane transporter activity (IEA)

neutral L-amino acid transmembrane transporter activity (IEA)

protein binding (ISO)

secondary active transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21511949

Genomics

Comparative Map Data

Slc38a7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,215,336 - 9,231,592 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	9,215,383 - 9,231,589 (+)	Ensembl				GRCr8
mRatBN7.2	19	9,209,203 - 9,225,472 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,209,257 - 9,225,454 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	9,177,964 - 9,192,877 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	9,944,782 - 9,959,695 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,231,088 - 9,246,002 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	9,622,594 - 9,638,221 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	9,622,611 - 9,638,222 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	9,607,716 - 9,623,404 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	9,664,603 - 9,681,055 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,107,765 - 9,121,788 (+)	NCBI		Celera
RGSC_v3.1	19	9,670,000 - 9,685,871 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

SLC38A7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	58,665,109 - 58,684,770 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	58,663,015 - 58,684,770 (-)	Ensembl			hg38	GRCh38
GRCh37	16	58,699,013 - 58,718,674 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	57,257,799 - 57,276,175 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	43,199,597 - 43,219,111 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	44,565,692 - 44,584,050 (-)	NCBI		HuRef
CHM1_1	16	60,107,195 - 60,125,575 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	64,457,615 - 64,477,277 (-)	NCBI		T2T-CHM13v2.0

Slc38a7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,562,548 - 96,580,205 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	96,562,548 - 96,580,167 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	95,835,920 - 95,853,577 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,835,920 - 95,853,539 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	98,359,823 - 98,377,391 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	98,725,052 - 98,742,620 (-)	NCBI		MGSCv36	mm8
Celera	8	100,146,714 - 100,164,200 (-)	NCBI		Celera
Cytogenetic Map	8	D1	NCBI
cM Map	8	47.67	NCBI

Slc38a7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	16,086,510 - 16,101,184 (-)	Ensembl
ChiLan1.0	NW_004955433	16,086,747 - 16,100,185 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC38A7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	68,144,012 - 68,168,045 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	74,067,639 - 74,091,676 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	38,949,484 - 38,973,523 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	58,076,825 - 58,098,972 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	58,076,840 - 58,098,897 (-)	Ensembl			panPan2	panpan1.1

SLC38A7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	57,998,908 - 58,011,288 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	57,999,419 - 58,009,461 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	54,630,120 - 54,642,500 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	58,539,794 - 58,552,185 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	58,539,861 - 58,552,185 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	55,366,877 - 55,379,276 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	56,371,630 - 56,384,019 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	57,269,398 - 57,281,818 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc38a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,158,292 - 49,180,280 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	10,416,557 - 10,430,713 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	10,408,880 - 10,430,689 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC38A7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	20,337,137 - 20,401,684 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	20,387,113 - 20,401,733 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SLC38A7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	44,602,899 - 44,625,094 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	44,601,662 - 44,625,106 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	31,540,351 - 31,564,619 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc38a7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	27,596,125 - 27,611,022 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	27,596,061 - 27,610,214 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc38a7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	2,652,784 - 2,667,871 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc38a7
123 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	85
Count of miRNA genes:	73
Interacting mature miRNAs:	76
Transcripts:	ENSRNOT00000061498
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	90	59	6	354	190	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY294328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061498 ⟹ ENSRNOP00000058216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,215,383 - 9,231,589 (+)	Ensembl
mRatBN7.2 Ensembl	19	9,209,257 - 9,225,454 (+)	Ensembl
Rnor_6.0 Ensembl	19	9,622,611 - 9,638,222 (+)	Ensembl

RefSeq Acc Id:

NM_001003705 ⟹ NP_001003705

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,215,378 - 9,230,325 (+)	NCBI
mRatBN7.2	19	9,209,261 - 9,224,208 (+)	NCBI
Rnor_6.0	19	9,622,636 - 9,636,954 (+)	NCBI
Rnor_5.0	19	9,607,716 - 9,623,404 (+)	NCBI
RGSC_v3.4	19	9,664,603 - 9,681,055 (+)	RGD
Celera	19	9,107,765 - 9,121,788 (+)	RGD

Sequence:

show sequence

GCGACGCCTACAAGGTTGACCAGCATTCCCTGAGATTAGAACCCCTGAAGGGGCAGGCATCCTC
CCAGCAAGCCCAGAAATGTGGTCCTGAGGCAGAGCCCATAGCTTTCGGAAGGAAAGTAGTCTTG
GGCCATGGCCCAGGTCAGCATCAACAGTGACTACAGCGAGTGGGGCTCCAGCACTGATGCTGGG
GAGCGGGCCCGTTTGCTACAAAGTCCCTGTGTGGATGTGGTGCCCAAGAGAGAGGGGGAAGCGT
CCCCTGGAGATCCAGACAGCGGCACCACTTCGACGCTTGGAGCAGTCTTCATCGTTGTCAATGC
CTGCCTCGGCGCGGGTCTGCTCAACTTCCCAGCAGCCTTCAGCACTGCTGGGGGCGTGGCAGCC
GGCATCGCCCTGCAGATGGGCATGCTGGTTTTCATCATTAGTGGGCTGGTCATTCTGGCCTACT
GCTCCCAAGCCAGCAATGAGAGGACCTACCAGGAGGTGGTATGGGCTGTGTGTGGCAAGCTGAC
CGGTGTGCTGTGTGAGATAGCCATTGCAGTCTACACCTTCGGGACCTGCATCGCCTTCCTCATC
ATTATTGGGGACCAGCAGGACAAGATTATAGCTGTCATGGCGAAGGAGCCTGATGGGGCCAGCG
GCAGCCCCTGGTACACAGACCGCAAGTTCACCATCAGCCTCACTGCCTTCCTCTTCATCCTGCC
CCTGTCCATCCCCAAGGAGATCGGCTTCCAGAAATATGCCAGCTCCCTGAGTGTCGTGGGCACC
TGGTATGTCACCGCCATTGTAATTATCAAATACATCTGGCCAGATAAGGAGATGCGCCCGGGGG
ACATCTTGACCAGACCAGCTTCCTGGATGGCTGTGTTCAACGCCATGCCCACCATCTGCTTTGG
ATTTCAGTGCCACGTGAGCAGCGTACCGGTCTTCAACAGCATGCGGCAGCCCCAAGTAAAGACC
TGGGGCGGAGTGGTGACGGCTGCCATGGTCATAGCTCTGGCTGTCTACATGGGCACAGGCATCT
GCGGCTTCCTGACTTTTGGAGCTGCCGTGGATCCTGACGTGCTCCGGTCCTACCCCTCAGAGGA
CGTGGCTGTGGCTGTTGCCCGAGCCTTCATCATCCTGAGCGTCCTCACCTCCTATCCCATCCTA
CACTTCTGTGGGCGGGCTGTGGTGGAAGGCCTGTGGCTGCGATACAAGGGGACGCCCGTGGAGG
AGGACGTGGGCCGAGAGCGCCGGCGCCGGGTCCTGCAGACGCTGGTGTGGTTCCTACTCACCCT
GCTACTAGCACTCTTTATCCCTGACATTGGCAAGGTCATCTCGGTCATCGGAGGCCTGGCAGCC
TGCTTCATCTTCATTTTCCCAGGGCTGTGCCTCATCCAAGCCAAACTCTCAGAAATGGAAGAGG
TCAAACCGGCCAGCTGGTGGGCACTGGTCAGTTATGGAGTCCTTCTGGTCACCCTGGGAGCCTT
CATCTTTGGCCAGACCACAGCCAATGCCGTCTTTGTGGACCTCTTAGCCTGAACACTGCTTCCC
CAAACATGTGACCAGATGCAGCTCTCAGAGCTGTGGAGCTGCCCAAGTCCCACGTACTGTTCTG
GCTAGTGAGATGACATGGGGACACCTTCCCCATGGACAGTCATAAGACAATCAGCCGCAAATCT
GTGGACAGATCCTGCCCAGCTGCCTTGTTTCCTGATGGCGGTCCATAGCACAGGACTGTCCCCT
TCACCCAGCTCTCAACTTCAAGCCTTTGGGACTTGGGAATGGAGAGAGTCAGTGGGTCTCAGAA
GAGAGAGCCTATTCTGACTTCCCTCTGGAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255067 ⟹ XP_006255129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,215,336 - 9,231,592 (+)	NCBI
mRatBN7.2	19	9,209,203 - 9,225,472 (+)	NCBI
Rnor_6.0	19	9,622,594 - 9,638,221 (+)	NCBI
Rnor_5.0	19	9,607,716 - 9,623,404 (+)	NCBI

Sequence:

show sequence

TCATGTGATTCAAACTCACGTGTTTCTAGAGTCGGCTCTGGAGCGACGCCTACAAGATTTTAGG
TAAAGCCTTGAGAAGAACTTGAGACCAAAAAGGGAGGTGAGGAGACTCTGAGCCCATACCTTTG
GGCAGAGGAAACAGCCCTCTTCTAGATTAGCAGGTTGACCAGCATTCCCTGAGATTAGAACCCC
TGAAGGGGCAGGCATCCTCCCAGCAAGCCCAGAAATGTGGTCCTGAGGCAGAGCCCATAGCTTT
CGGAAGGAAAGTAGTCTTGGGCCATGGCCCAGGTCAGCATCAACAGTGACTACAGCGAGTGGGG
CTCCAGCACTGATGCTGGGGAGCGGGCCCGTTTGCTACAAAGTCCCTGTGTGGATGTGGTGCCC
AAGAGAGAGGGGGAAGCGTCCCCTGGAGATCCAGACAGCGGCACCACTTCGACGCTTGGAGCAG
TCTTCATCGTTGTCAATGCCTGCCTCGGCGCGGGTCTGCTCAACTTCCCAGCAGCCTTCAGCAC
TGCTGGGGGCGTGGCAGCCGGCATCGCCCTGCAGATGGGCATGCTGGTTTTCATCATTAGTGGG
CTGGTCATTCTGGCCTACTGCTCCCAAGCCAGCAATGAGAGGACCTACCAGGAGGTGGTATGGG
CTGTGTGTGGCAAGCTGACCGGTGTGCTGTGTGAGATAGCCATTGCAGTCTACACCTTCGGGAC
CTGCATCGCCTTCCTCATCATTATTGGGGACCAGCAGGACAAGATTATAGCTGTCATGGCGAAG
GAGCCTGATGGGGCCAGCGGCAGCCCCTGGTACACAGACCGCAAGTTCACCATCAGCCTCACTG
CCTTCCTCTTCATCCTGCCCCTGTCCATCCCCAAGGAGATCGGCTTCCAGAAATATGCCAGCTC
CCTGAGTGTCGTGGGCACCTGGTATGTCACCGCCATTGTAATTATCAAATACATCTGGCCAGAT
AAGGAGATGCGCCCGGGGGACATCTTGACCAGACCAGCTTCCTGGATGGCTGTGTTCAACGCCA
TGCCCACCATCTGCTTTGGATTTCAGTGCCACGTGAGCAGCGTACCGGTCTTCAACAGCATGCG
GCAGCCCCAAGTAAAGACCTGGGGCGGAGTGGTGACGGCTGCCATGGTCATAGCTCTGGCTGTC
TACATGGGCACAGGCATCTGCGGCTTCCTGACTTTTGGAGCTGCCGTGGATCCTGACGTGCTCC
GGTCCTACCCCTCAGAGGACGTGGCTGTGGCTGTTGCCCGAGCCTTCATCATCCTGAGCGTCCT
CACCTCCTATCCCATCCTACACTTCTGTGGGCGGGCTGTGGTGGAAGGCCTGTGGCTGCGATAC
AAGGGGACGCCCGTGGAGGAGGACGTGGGCCGAGAGCGCCGGCGCCGGGTCCTGCAGACGCTGG
TGTGGTTCCTACTCACCCTGCTACTAGCACTCTTTATCCCTGACATTGGCAAGGTCATCTCGGT
CATCGGAGGCCTGGCAGCCTGCTTCATCTTCATTTTCCCAGGGCTGTGCCTCATCCAAGCCAAA
CTCTCAGAAATGGAAGAGGTCAAACCGGCCAGCTGGTGGGCACTGGTCAGTTATGGAGTCCTTC
TGGTCACCCTGGGAGCCTTCATCTTTGGCCAGACCACAGCCAATGCCGTCTTTGTGGACCTCTT
AGCCTGAACACTGCTTCCCCAAACATGTGACCAGATGCAGCTCTCAGAGCTGTGGAGCTGCCCA
AGTCCCACGTACTGTTCTGGCTAGTGAGATGACATGGGGACACCTTCCCCATGGACAGTCATAA
GACAATCAGCCGCAAATCTGTGGACAGATCCTGCCCAGCTGCCTTGTTTCCTGATGGCGGTCCA
TAGCACAGGACTGTCCCCTTCACCCAGCTCTCAACTTCAAGCCTTTGGGACTTGGGAATGGAGA
GAGTCAGTGGGTCTCAGAAGAGAGAGCCTATTCTGACTTCCCTCTGGAAAAAAAAAGAACAGAA
AGCATATATGCACAGGGCTGGCCTCCACACAGAGTGTGTCAGGACTGTGCTCAGTACCTCGGGG
CTTAGTGCCTGCCCATGTCTCTCAGAAGCCACTGGCAGCGTCTCCTGGGACCTGGCAACTTCCA
AAGGAGATGCCAACATCATAGAAATGTCCCCTGAGTCTCTGGTAGCCTCCCAAGTCTTTAGGGT
CCCTACCCTAACTTTGTCCAGTCCTAACGGTCCATGTTGTACTGGTATGCTTCTACTGTGTTCC
CAGACATCACCGAGTCTAATGTTTACAAACGGTGCCAGCCTGGCTCTGAGGCTGGGGGCTGCCA
TGCCGTGGTGCTGTGAGCACTCCTCCGTTAGCTTTTGGCATGGGCAGACGGTCTGTTGTCTTTC
AGATTCCAGATAGGCCCGTCTTTTCAGAAGTTCAGGGTAGGACCTTTTAGACCATCCTTCCAGG
CTGGGCTTGCCAAGGTCCAGGCAAGGTTCCAGCTCCTCCACGCCTTGTCTTCTCTCTCTTCCCG
CTAAACCCAGCCCCAGGACCCAGTTAGACTGGGGACCCTGGATGTCCTCCTTAACTCTCCATCT
CCCCCAGTCCCACACTCCCATCCCTCTCCCCCAGCCCTACCTCTTCATGCATGGGTCTTGTTAT
TTGACGGGAGAGGGTGTGGCACCAGACCCTGTCACACCGGCTTGCCTGGCTCCACACATCTGTC
AGGTTTGGCCTCTGTGCCTGGGAGTCCCGCTGAGTCACACCCACCTCAGGTGAGGCCAGCTTAG
ATACTTCTCTATTTTGACTGCCTTAGCCTCGAACCTACCCCTGCTCACTTTTGTAAGTCCCAGG
TCCAGAATTGGTCTTTCTAAATCTATTCTGTGTAAAACACATCCTAGGAGCAAAAGGGACCCTT
CCCAGAAGACGACCCCACCCCCATCCCCAACTCAGGTCAGTCCTGTGGAGGCAGGAGGCTCAGT
GTCCAGTCCTGCTGGATTATTCCTTTCCCATCCATCCCCAGTACCCATTCTTTCTGGTCCCACT
ATACTGTTTTCCCCCAGCCTCCAAAGCTGCCTTTCATGGTGGCCAATCATAAAGCTAGACGTGG
CACAGAGACTGGCTAGCTGGGACAGTTGGCTAGAACCCAGCTTCTGCTTGACCTCAGGACCCCC
TTCCTCCCTCTCCTTTGCCCTCTGTTTCCAGTTTCTTGCTGGTTCTTTTCTACTCAAGCACACT
TGGAGAAGTAAGGATGGTTAATAAAGGGGCTTACACTGCTGAA

hide sequence

RefSeq Acc Id:

XM_063277841 ⟹ XP_063133911

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,221,674 - 9,231,592 (+)	NCBI

RefSeq Acc Id:

XM_063277842 ⟹ XP_063133912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,222,160 - 9,231,592 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001003705	(Get FASTA)	NCBI Sequence Viewer
	NP_001420930	(Get FASTA)	NCBI Sequence Viewer
	XP_006255129	(Get FASTA)	NCBI Sequence Viewer
	XP_063133911	(Get FASTA)	NCBI Sequence Viewer
	XP_063133912	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86369	(Get FASTA)	NCBI Sequence Viewer
	AAQ56180	(Get FASTA)	NCBI Sequence Viewer
	EDL87268	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058216
	ENSRNOP00000058216.1
GenBank Protein	Q6JWR2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001003705 ⟸ NM_001003705

- UniProtKB:

Q6JWR2 (UniProtKB/Swiss-Prot), A6JXZ0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQVSINSDYSEWGSSTDAGERARLLQSPCVDVVPKREGEASPGDPDSGTTSTLGAVFIVVNAC
LGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTG
VLCEIAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPDGASGSPWYTDRKFTISLTAFLFILPL
SIPKEIGFQKYASSLSVVGTWYVTAIVIIKYIWPDKEMRPGDILTRPASWMAVFNAMPTICFGF
QCHVSSVPVFNSMRQPQVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLRSYPSEDV
AVAVARAFIILSVLTSYPILHFCGRAVVEGLWLRYKGTPVEEDVGRERRRRVLQTLVWFLLTLL
LALFIPDIGKVISVIGGLAACFIFIFPGLCLIQAKLSEMEEVKPASWWALVSYGVLLVTLGAFI
FGQTTANAVFVDLLA

hide sequence

RefSeq Acc Id:

XP_006255129 ⟸ XM_006255067

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAQVSINSDYSEWGSSTDAGERARLLQSPCVDVVPKREGEASPGDPDSGTTSTLGAVFIVVNAC
LGAGLLNFPAAFSTAGGVAAGIALQMGMLVFIISGLVILAYCSQASNERTYQEVVWAVCGKLTG
VLCEIAIAVYTFGTCIAFLIIIGDQQDKIIAVMAKEPDGASGSPWYTDRKFTISLTAFLFILPL
SIPKEIGFQKYASSLSVVGTWYVTAIVIIKYIWPDKEMRPGDILTRPASWMAVFNAMPTICFGF
QCHVSSVPVFNSMRQPQVKTWGGVVTAAMVIALAVYMGTGICGFLTFGAAVDPDVLRSYPSEDV
AVAVARAFIILSVLTSYPILHFCGRAVVEGLWLRYKGTPVEEDVGRERRRRVLQTLVWFLLTLL
LALFIPDIGKVISVIGGLAACFIFIFPGLCLIQAKLSEMEEVKPASWWALVSYGVLLVTLGAFI
FGQTTANAVFVDLLA

hide sequence

Ensembl Acc Id:

ENSRNOP00000058216 ⟸ ENSRNOT00000061498

RefSeq Acc Id:	XP_063133911 ⟸ XM_063277841
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063133912 ⟸ XM_063277842
- Peptide Label:	isoform X3

Protein Domains

Amino acid transporter transmembrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6JWR2-F1-model_v2	AlphaFold	Q6JWR2	1-463	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700921

Promoter ID:

EPDNEW_R11445

Type:

multiple initiation site

Name:

Slc38a7_1

Description:

solute carrier family 38, member 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	9,622,621 - 9,622,681	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303268	AgrOrtholog
BioCyc Gene	G2FUF-6554	BioCyc
Ensembl Genes	ENSRNOG00000012007	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000061498	ENTREZGENE
	ENSRNOT00000061498.4	UniProtKB/Swiss-Prot
Gene3D-CATH	Amino acid/polyamine transporter I	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109456	IMAGE-MGC_LOAD
InterPro	AA_transpt_TM	UniProtKB/Swiss-Prot
KEGG Report	rno:291840	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105833	IMAGE-MGC_LOAD
NCBI Gene	291840	ENTREZGENE
PANTHER	AMINO ACID TRANSPORTER	UniProtKB/Swiss-Prot
	SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 7-RELATED	UniProtKB/Swiss-Prot
Pfam	Aa_trans	UniProtKB/Swiss-Prot
PhenoGen	Slc38a7	PhenoGen
RatGTEx	ENSRNOG00000012007	RatGTEx
UniProt	A6JXZ0	ENTREZGENE, UniProtKB/TrEMBL
	Q6JWR2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Slc38a7	solute carrier family 38, member 7	LOC291840	amino acid transporter	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	LOC291840				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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