Pyroxd1 (pyridine nucleotide-disulphide oxidoreductase domain 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Pyroxd1 (pyridine nucleotide-disulphide oxidoreductase domain 1) Rattus norvegicus
Analyze
Symbol: Pyroxd1
Name: pyridine nucleotide-disulphide oxidoreductase domain 1
RGD ID: 1303253
Description: Predicted to enable NAD(P)H oxidase H2O2-forming activity and molecular sensor activity. Predicted to be involved in cellular response to oxidative stress and tRNA exon ligation. Predicted to be located in nucleus and sarcomere. Human ortholog(s) of this gene implicated in myofibrillar myopathy 8. Orthologous to human PYROXD1 (pyridine nucleotide-disulphide oxidoreductase domain 1); INTERACTS WITH bisphenol A; indole-3-methanol; paracetamol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94881; pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1; similar to Recql protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,023,137 - 177,042,152 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4177,023,138 - 177,055,586 (+)EnsemblGRCr8
mRatBN7.24175,292,124 - 175,311,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,292,177 - 175,308,689 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4181,587,023 - 181,603,261 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,371,292 - 177,387,530 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04175,991,849 - 176,008,088 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4179,242,698 - 179,258,936 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive4176,879,685 - 176,895,923 (+)NCBILyon_Normotensive
Lyon_Hypertensive4177,375,157 - 177,391,395 (+)NCBILyon_Hypertensive
F344_StmMcwi4176,697,064 - 176,713,301 (+)NCBIF344_StmMcwi
Rnor_6.04176,565,733 - 176,581,976 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,565,694 - 176,581,952 (+)Ensemblrn6Rnor6.0
Rnor_5.04240,779,516 - 240,795,759 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44179,910,953 - 179,927,331 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4163,824,933 - 163,841,122 (+)NCBICelera
RGSC_v3.14180,156,076 - 180,172,454 (+)NCBI
Cytogenetic Map4q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA)
nucleus  (IEA,ISO,ISS)
sarcomere  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21873635   PMID:27745833   PMID:30345904  


Genomics

Comparative Map Data
Pyroxd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,023,137 - 177,042,152 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4177,023,138 - 177,055,586 (+)EnsemblGRCr8
mRatBN7.24175,292,124 - 175,311,143 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,292,177 - 175,308,689 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4181,587,023 - 181,603,261 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,371,292 - 177,387,530 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04175,991,849 - 176,008,088 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd4179,242,698 - 179,258,936 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive4176,879,685 - 176,895,923 (+)NCBILyon_Normotensive
Lyon_Hypertensive4177,375,157 - 177,391,395 (+)NCBILyon_Hypertensive
F344_StmMcwi4176,697,064 - 176,713,301 (+)NCBIF344_StmMcwi
Rnor_6.04176,565,733 - 176,581,976 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,565,694 - 176,581,952 (+)Ensemblrn6Rnor6.0
Rnor_5.04240,779,516 - 240,795,759 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44179,910,953 - 179,927,331 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4163,824,933 - 163,841,122 (+)NCBICelera
RGSC_v3.14180,156,076 - 180,172,454 (+)NCBI
Cytogenetic Map4q44NCBI
PYROXD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,437,655 - 21,471,250 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,437,615 - 21,471,250 (+)Ensemblhg38GRCh38
GRCh371221,590,589 - 21,624,184 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,481,878 - 21,514,567 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1226,745,930 - 26,779,563 (+)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,364,639 - 21,398,217 (+)NCBIHuRef
CHM1_11221,556,189 - 21,589,812 (+)NCBICHM1_1
T2T-CHM13v2.01221,316,354 - 21,349,929 (+)NCBIT2T-CHM13v2.0
Pyroxd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,291,381 - 142,307,881 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,291,380 - 142,308,983 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386142,345,627 - 142,362,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,345,654 - 142,363,257 (+)Ensemblmm10GRCm38
MGSCv376142,294,217 - 142,311,144 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366142,302,894 - 142,319,258 (+)NCBIMGSCv36mm8
Celera6145,405,658 - 145,422,585 (+)NCBICelera
Cytogenetic Map6G2NCBI
cM Map673.9NCBI
Pyroxd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,097,859 - 17,115,148 (+)Ensembl
ChiLan1.0NW_00495541317,097,859 - 17,115,148 (+)NCBIChiLan1.0ChiLan1.0
PYROXD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,330,950 - 75,364,826 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,326,469 - 75,361,224 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,826,835 - 64,860,651 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,430,708 - 67,463,996 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,430,716 - 67,463,996 (-)EnsemblpanPan2panpan1.1
PYROXD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12726,234,503 - 26,257,328 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2726,234,777 - 26,257,528 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2720,194,447 - 20,221,893 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02726,560,004 - 26,587,581 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2726,560,007 - 26,587,543 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12726,423,276 - 26,450,836 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02726,401,954 - 26,429,406 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02719,899,333 - 19,926,966 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pyroxd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,461,874 - 87,490,113 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,385,362 - 5,406,179 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,384,722 - 5,412,999 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYROXD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,993,717 - 52,020,809 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1551,994,793 - 52,020,844 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,272,750 - 55,297,405 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PYROXD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,299,637 - 21,333,860 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,299,696 - 21,333,397 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606913,811,092 - 13,845,038 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pyroxd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475217,220,995 - 17,242,496 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475217,221,444 - 17,241,868 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pyroxd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16100,298 - 116,627 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pyroxd1
84 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:13
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000016794
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4176806581181925369Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
RH130945  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24175,308,472 - 175,308,664 (+)MAPPERmRatBN7.2
Rnor_6.04176,582,028 - 176,582,219NCBIRnor6.0
Rnor_5.04240,795,811 - 240,796,002UniSTSRnor5.0
RGSC_v3.44179,927,388 - 179,927,579UniSTSRGSC3.4
Celera4163,841,179 - 163,841,370UniSTS
RH 3.4 Map41031.2UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016794   ⟹   ENSRNOP00000016794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4177,023,138 - 177,055,586 (+)Ensembl
mRatBN7.2 Ensembl4175,292,177 - 175,308,413 (+)Ensembl
Rnor_6.0 Ensembl4176,565,694 - 176,581,952 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113178   ⟹   ENSRNOP00000083610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4177,023,138 - 177,042,154 (+)Ensembl
mRatBN7.2 Ensembl4175,293,981 - 175,308,689 (+)Ensembl
RefSeq Acc Id: NM_001004234   ⟹   NP_001004234
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,023,189 - 177,039,427 (+)NCBI
mRatBN7.24175,292,177 - 175,308,416 (+)NCBI
Dahl_SR_JrHsd4179,242,698 - 179,258,936 (+)NCBI
Lyon_Normotensive4176,879,685 - 176,895,923 (+)NCBI
Lyon_Hypertensive4177,375,157 - 177,391,395 (+)NCBI
F344_StmMcwi4176,697,064 - 176,713,301 (+)NCBI
Rnor_6.04176,565,733 - 176,581,971 (+)NCBI
Rnor_5.04240,779,516 - 240,795,759 (+)NCBI
RGSC_v3.44179,910,953 - 179,927,331 (+)RGD
Celera4163,824,933 - 163,841,122 (+)RGD
Sequence:
RefSeq Acc Id: XM_017592597   ⟹   XP_017448086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,023,392 - 177,039,431 (+)NCBI
mRatBN7.24175,292,356 - 175,308,425 (+)NCBI
Rnor_6.04176,565,878 - 176,581,976 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107464   ⟹   XP_038963392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,023,137 - 177,042,152 (+)NCBI
mRatBN7.24175,292,124 - 175,311,143 (+)NCBI
RefSeq Acc Id: XM_039107465   ⟹   XP_038963393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,023,137 - 177,038,285 (+)NCBI
mRatBN7.24175,292,124 - 175,307,274 (+)NCBI
RefSeq Acc Id: XR_005503206
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84177,023,137 - 177,038,212 (+)NCBI
mRatBN7.24175,292,124 - 175,307,194 (+)NCBI
RefSeq Acc Id: NP_001004234   ⟸   NM_001004234
- UniProtKB: Q68FS6 (UniProtKB/Swiss-Prot),   F1LR31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448086   ⟸   XM_017592597
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZZN9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016794   ⟸   ENSRNOT00000016794
RefSeq Acc Id: XP_038963392   ⟸   XM_039107464
- Peptide Label: isoform X2
- UniProtKB: F1LR31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963393   ⟸   XM_039107465
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000083610   ⟸   ENSRNOT00000113178

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FS6-F1-model_v2 AlphaFold Q68FS6 1-498 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693485
Promoter ID:EPDNEW_R4009
Type:initiation region
Name:Pyroxd1_1
Description:pyridine nucleotide-disulphide oxidoreductase domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04176,565,700 - 176,565,760EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303253 AgrOrtholog
BioCyc Gene G2FUF-42496 BioCyc
Ensembl Genes ENSRNOG00000012472 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016794 ENTREZGENE
  ENSRNOT00000113178 ENTREZGENE
Gene3D-CATH 3.30.390.30 UniProtKB/Swiss-Prot
  3.50.50.60 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7110714 IMAGE-MGC_LOAD
InterPro FAD-dep_Oxidoreductase UniProtKB/Swiss-Prot
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot
  FAD/NAD-binding_dom UniProtKB/Swiss-Prot
  FAD/NAD-linked_Rdtase_dimer_sf UniProtKB/Swiss-Prot
  Rubredoxin_C UniProtKB/Swiss-Prot
KEGG Report rno:297708 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94881 IMAGE-MGC_LOAD
NCBI Gene 297708 ENTREZGENE
PANTHER PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING UniProtKB/Swiss-Prot
  PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam Pyr_redox_2 UniProtKB/Swiss-Prot
  Rubredoxin_C UniProtKB/Swiss-Prot
PhenoGen Pyroxd1 PhenoGen
PRINTS FADPNR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012472 RatGTEx
Superfamily-SCOP SSF51905 UniProtKB/Swiss-Prot
UniProt A0A8I5ZZN9 ENTREZGENE, UniProtKB/TrEMBL
  F1LR31 ENTREZGENE, UniProtKB/TrEMBL
  PYRD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Pyroxd1  pyridine nucleotide-disulphide oxidoreductase domain 1  MGC94881  similar to Recql protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 MGC94881        Symbol and Name status set to provisional 70820 PROVISIONAL