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Gene: Fgfr1op2 (FGFR1 oncogene partner 2) Rattus norvegicus

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Symbol:

Fgfr1op2

Name:

FGFR1 oncogene partner 2

RGD ID:

1303233

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in response to wounding. Predicted to act upstream of or within wound healing. Located in cytoplasm. Orthologous to human FGFR1OP2 (FGFR1 oncogene partner 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

FGFR1 oncogene partner 2 homolog; Wit3.0; Wit3.0_alpha; Wit3.0_beta; wound inducible transcript 3.0; wound-inducible transcript 3.0 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FGFR1OP2 (FGFR1 oncogene partner 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Fgfr1op2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fgfr1op2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FGFR1OP2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FGFR1OP2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fgfr1op2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FGFR1OP2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FGFR1OP2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fgfr1op2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fgfr1op2 (FGFR1 oncogene partner 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Fgfr1op2 (FGFR1 oncogene partner 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FGFR1OP2 (FGFR1 oncogene partner 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fgfr1op2 (FGFR1 oncogene partner 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C14B1.8	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Fgop2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fgfr1op2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fgfr1op2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	181,222,298 - 181,243,318 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	181,222,323 - 181,243,322 (+)	Ensembl				GRCr8
mRatBN7.2	4	179,491,602 - 179,512,630 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	179,491,599 - 179,512,630 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	185,777,106 - 185,798,069 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	181,561,631 - 181,582,590 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	180,182,049 - 180,203,008 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	180,887,182 - 180,908,206 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	180,887,182 - 180,908,198 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	245,046,889 - 245,067,913 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	184,153,022 - 184,173,961 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	167,988,215 - 168,009,154 (+)	NCBI		Celera
RGSC_v3.1	4	184,398,145 - 184,419,085 (+)	NCBI
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

myeloid neoplasm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

aflatoxin B1 (ISO)

amiodarone (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chrysene (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

diclofenac (ISO)

dicrotophos (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

glyphosate (ISO)

hydrogen peroxide (ISO)

lead(0) (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

methylparaben (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

response to wounding (IBA)

wound healing (ISO)

Cellular Component

cytoplasm (IDA,IEA)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Small cytoskeleton-associated molecule, fibroblast growth factor receptor 1 oncogene partner 2/wound inducible transcript-3.0 (FGFR1OP2/wit3.0), facilitates fibroblast-driven wound closure.	Lin A, etal., Am J Pathol. 2010 Jan;176(1):108-21. doi: 10.2353/ajpath.2010.090256. Epub 2009 Dec 3.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	Oral fibroblast expression of wound-inducible transcript 3.0 (wit3.0) accelerates the collagen gel contraction in vitro.	Sukotjo C, etal., J Biol Chem. 2003 Dec 19;278(51):51527-34. Epub 2003 Oct 3.
7.	Molecular cloning of wound inducible transcript (wit 3.0) differentially expressed in edentulous oral mucosa undergoing tooth extraction wound-healing.	Sukotjo C, etal., J Dent Res 2002 Apr;81(4):229-35.

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Fgfr1op2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	181,222,298 - 181,243,318 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	181,222,323 - 181,243,322 (+)	Ensembl				GRCr8
mRatBN7.2	4	179,491,602 - 179,512,630 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	179,491,599 - 179,512,630 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	185,777,106 - 185,798,069 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	181,561,631 - 181,582,590 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	180,182,049 - 180,203,008 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	180,887,182 - 180,908,206 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	180,887,182 - 180,908,198 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	245,046,889 - 245,067,913 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	184,153,022 - 184,173,961 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	167,988,215 - 168,009,154 (+)	NCBI		Celera
RGSC_v3.1	4	184,398,145 - 184,419,085 (+)	NCBI
Cytogenetic Map	4	q44	NCBI

FGFR1OP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	26,938,470 - 26,966,648 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	26,938,401 - 26,966,650 (+)	Ensembl			hg38	GRCh38
GRCh37	12	27,091,403 - 27,119,581 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	26,982,583 - 27,010,129 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	26,982,582 - 27,010,129	NCBI
Celera	12	32,237,461 - 32,265,742 (+)	NCBI		Celera
Cytogenetic Map	12	p11.23	NCBI
HuRef	12	26,861,362 - 26,889,645 (+)	NCBI		HuRef
CHM1_1	12	27,056,349 - 27,084,628 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	26,810,479 - 26,838,658 (+)	NCBI		T2T-CHM13v2.0

Fgfr1op2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	146,479,401 - 146,500,696 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	146,478,701 - 146,500,696 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	146,577,903 - 146,599,198 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	146,577,203 - 146,599,198 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	146,526,433 - 146,547,720 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	146,535,105 - 146,556,360 (+)	NCBI		MGSCv36	mm8
Celera	6	149,630,355 - 149,651,644 (+)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	77.7	NCBI

Fgfr1op2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	21,814,278 - 21,844,232 (+)	Ensembl
ChiLan1.0	NW_004955413	21,814,133 - 21,843,105 (+)	NCBI	ChiLan1.0	ChiLan1.0

FGFR1OP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	69,848,858 - 69,875,836 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	69,845,256 - 69,872,234 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	59,345,834 - 59,372,895 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	61,960,483 - 61,986,826 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	61,960,483 - 61,986,826 (-)	Ensembl			panPan2	panpan1.1

FGFR1OP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	20,672,166 - 20,704,530 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	20,674,552 - 20,704,498 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	25,702,442 - 25,713,885 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	20,866,935 - 20,899,331 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	20,867,467 - 20,899,261 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	20,680,184 - 20,691,626 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	20,702,482 - 20,713,929 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	25,865,306 - 25,876,753 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fgfr1op2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	82,598,532 - 82,613,814 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936548	523,288 - 534,703 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936548	521,418 - 548,290 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FGFR1OP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	46,794,110 - 46,824,153 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	46,794,118 - 46,824,062 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	50,345,625 - 50,375,535 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FGFR1OP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	26,686,891 - 26,715,379 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	26,686,962 - 26,713,485 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666069	8,356,089 - 8,384,571 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fgfr1op2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624752	12,226,729 - 12,257,357 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fgfr1op2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	4,253,240 - 4,274,375 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fgfr1op2
219 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	822
Count of miRNA genes:	238
Interacting mature miRNAs:	307
Transcripts:	ENSRNOT00000002476, ENSRNOT00000042270
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	160623982	184426481	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	176806581	181925369	Rat

Markers in Region

BE107623

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	179,510,883 - 179,511,041 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	180,906,460 - 180,906,617	NCBI	Rnor6.0
Rnor_5.0	4	245,066,167 - 245,066,324	UniSTS	Rnor5.0
RGSC_v3.4	4	184,172,300 - 184,172,457	UniSTS	RGSC3.4
Celera	4	168,007,493 - 168,007,650	UniSTS
RH 3.4 Map	4	1068.2	UniSTS
Cytogenetic Map	4	q44	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_201421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY426739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY426740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002476 ⟹ ENSRNOP00000002476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,222,323 - 181,243,322 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,491,643 - 179,512,630 (+)	Ensembl
Rnor_6.0 Ensembl	4	180,887,285 - 180,908,198 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000042270 ⟹ ENSRNOP00000039568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	181,222,326 - 181,243,321 (+)	Ensembl
mRatBN7.2 Ensembl	4	179,491,599 - 179,512,626 (+)	Ensembl
Rnor_6.0 Ensembl	4	180,887,182 - 180,908,121 (+)	Ensembl

RefSeq Acc Id:

NM_201421 ⟹ NP_958824

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,222,298 - 181,243,237 (+)	NCBI
mRatBN7.2	4	179,491,604 - 179,512,545 (+)	NCBI
Rnor_6.0	4	180,887,182 - 180,908,121 (+)	NCBI
Rnor_5.0	4	245,046,889 - 245,067,913 (+)	NCBI
RGSC_v3.4	4	184,153,022 - 184,173,961 (+)	RGD
Celera	4	167,988,215 - 168,009,154 (+)	RGD

Sequence:

show sequence

ACGCGGGGGAAGTCTCGCGAGGCTTGTCGCTGTGTGGCTGCCAGTAGCGGAGGTTCTGGTCCGC
CCGGGATGGAGCCGAGGCAAGCGGGCTGCCGGATCCTCCCTGCCGCTGTGTGAGCAGGGCTGTG
CGTCCGCTCGCTGAGCAGGCGCAGCGAGGCCGCGGAGAGCACTCTCTGGGCGCCTCCATCTCGC
GGGTGGTGGTCGCCGTCTCTGACGGCTGAGGGGGACTGAAGCTGAGTGGAAAAACACGAGTGGG
TGAACCTCTGAGCCGGGCTCCCTGTCTCCGTGCTCTCACTGAGCTCCTGCCGGGAACAGAGAAA
TGAGCTGCACCATTGAGAAGGCACTTGCTGATGCTAAGGCCCTTGTTGAACGGTTGAGAGACCA
TGATGATGCAGCAGAGTCTCTCATCGAACAGACCACTGCCCTCAGCAAGCGAGTGGAAGCCATG
AAACAGTATCAGGAAGAAATCCAAGAACTTAATGAAGTAGCAAGACATCGGCCACGATCCACAC
TAGTTATGGGAATCCAGCAAGAAAACAGACAAATCAGAGAATTCCAACAAGAGAACAAAGAACT
GCGCACATCCTTGGAAGAGCACCAGTCTGCCTTGGAACTGATAATGAGCAAGTATCGAGAGCAG
ATGTTCAGATTGCTAATGGCCAGCAAGAAGGACGACCCGGGCATAATAATGAAGTTAAAGGAGC
AGCACTCAAAGATTGACATGGTACATCGTAACAGCTGCGAAGGATTCTTCCTGGATGCATCTCG
GCACATCCTTGAAGCACCTCAGCACGGACTGGAGAGGAGGCACTTGGAAGCAAATCAGAATGAG
TTGCAAGCACATGTTGACCAGATCACCGAGATGGCAGCAGTAATGAGAAAAGCTATTGAAATTG
ACGAACAGCAGGGTTGCAAGGAACAGCAGCGCATATTTCAACTTGAACAAGAAAACAAAGGCTT
GAGAGAGATCCTTCAGATAACTCGAGAATCCTTTTTGAACCTTCAGAAGGATGATGCGTCAGAG
AGTACATCTCTGTCCGCCTTAGTGACTAACAGTGACCTGAGTCTGAGGAAGAGCTGAGTGGTTG
GCTGAGGTCACTAAGACGGGCCCAGGAGTGAGTGGATGGATGAACATAAACCCAACTCCAGTCA
GCCTCTTTCCTCTAGTATGTCAGGGGCACTGGCGAAGAGACAGTAGCAGGATGTATAGCCAGTG
GTCATAAACTAGATCCCAGTCACAGCTCGACAGGAAAACCTGGGCCACAGAGTGAACATTGAGT
CTCCAAGGTGCTGCTGAGGACTGCAATTTGAGAAGTGCTGTTGGCCTCTTGGATGAGATATGGG
TCACCCTGAATGCTCCTAATAAACGTCGGAAAGCCTAAATTATCACAACTCCAAAAGAAGGTTG
GTGTGGTGTTCTGGATGGAAGACTTTGTTCTGATTCCTGTCCTTCTGTTCAGTGTCAGAGTCAG
CATAGCTTATGTATGTACCGCTTCTGTCTCGGTGCTCCCATCCCCCTGCCCATCTGTTCATCGC
CGGCAGTTCACATTTACAGGCTATAGGAATATGTCACTCGCATCACAAACTGAAGAAAGGAATA
TACTTGCACCTAGTTCCCATAACTCTTAACTAGCAAGTTATTCGTGACTTGCTTGAGTATATGT
ACCTCAGGAAGGAAGGAAAGACAAGAATATACTTTCTAAGAAAGACAGTTTTATATAGACACAT
TTAGTAGGTTAAACTACTTTGAGAGACTATGTTTGGTTCTCTGTTAACAATGAGCCTGGCTCTT
CCTCCTCTCTACATGATGTTTAAGGATACAGGACAGAGGGGTTGGGGATTTAGCTCAGTGGTAG
AGCGCTTGCCTAGCAACCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCTAAAAAAAGGGAAAAAA
AAAAGGATACAGGATAGCTCACTAGTACACAGAGTTGGCATATTTAATGTAATAAGATAGGTAT
GGTCATTTCCAAGTAAATTTGGAATTCTTTGGTATTTAAAAAAACACCTCTTCAAACATATAAG
TAAGAAAGCAGGCTCCAAAATCAAAGTTCTGGGACTGAGTCTAAACCCTGTTTAGTTCTTATAA
CCTGTGATTTTTCCCTACAACCTGTGACTCANAAACTGGCAGTGAAAGTGTGGGCCCACAGGCA
TTGTGCTTTGCACTTTAAAAAAAAAAAAGCTTAAGACCACAAGATAGAGAAGTGTGCTTTAATA
CCATTGCAGCCTAAACTCTTCTGTAGTGATCAGAATAAAAGAATAAAAGATTGTGAAATACGGC
AAAAAATATACAATACTTGTATGTGAAGTTAGCACAGATAAAAAGTAAATCATTTGTAAGTACA
TATTACTTTGCAGTGTAATTTTATGTGTAATTTCATGTATTGGCAAAATTCATAGGACTTTTAC
TTGAGAACCTTTCATTCTGAAGTTTGAGGTGAGTGGGGTCATAGGTCAGGTAGGAAAGGGCCAG
TACCCCAGGTGATAAACCGTTGTCATGCAGAGGCCTTAATATTTTATATTTAGGTGAATTTATT
TCTAAGACTTTTCTATTGGTTCTGGGAGAGTGTCCCTTAGTTTAGTGGTCATTCTTTCATGTAG
TTTGGCTCCAGGCCAGAATCTTAGAAGAAAGGCTACACAGTTGAGATGAGGCAGAATCAAGGAG
TGAGTAGTTCTATTGTGAAATGTTATTTCAGAAGTAATTATTTTTATAAAAAAATTATTTACTC
TTTGTCTTCTTGGATATAAGTTTAAGGTTGTGAATATTGAAAGACATTTGCATTGTTCTTAGCA
AGTTTTCCATCCCTCCTATCACCCCCCCCCTAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237688 ⟹ XP_006237750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,222,474 - 181,243,318 (+)	NCBI
mRatBN7.2	4	179,491,602 - 179,512,630 (+)	NCBI
Rnor_6.0	4	180,887,193 - 180,908,206 (+)	NCBI
Rnor_5.0	4	245,046,889 - 245,067,913 (+)	NCBI

Sequence:

show sequence

GTCTCGCGAGGCTTGTCGCTGTGTGGCTGCCAGTAGCGGAGGTTCTGGTCCGCCCGGGATGGAG
CCGAGGCAAGCGGGCTGCCGGATCCTCCCTGCCGCTGTGTGAGCAGGGCTGTGTGTCCGCTCGC
TGAGCAGGCGCAGCGAGGCCGCGGAGAGCACTCTCTGGGCGCCTCCATCTCGCGGGTGGTGGTC
GCCGTCTCTGACGGCTGAGGGGGACTGAAGCTGAGTGGAAAAACACGAGTGGGTGAACCTCTGA
GCCGGGCTCCCTGTCTCCGTGCTCTCACTGAGCTCCTGCCGGGAACAGAGAAATGAGCTGCACC
ATTGAGAAGGCACTTGCTGATGCTAAGGCCCTTGTTGAACGGTTGAGAGACCATGATGATGCAG
CAGAGTCTCTCATCGAACAGACCACTGCCCTCAGCAAGCGAGTGGAAGCCATGAAACAGTATCA
GGAAGAAATCCAAGAACTTAATGAAGTAGCAAGACATCGGCCACGATCCACACTAGTTATGGGA
ATCCAGCAAGAAAACAGACAAATCAGAGAATTACAACAAGAGAACAAAGAACTGCGCACATCCT
TGGAAGAGCACCAGTCTGCCTTGGAACTGATAATGAGCAAGTATCGAGAGCAGATGTTCAGATT
GCTAATGGCCAGCAAGAAGGACGACCCGGGCATAATAATGAAGTTAAAGGAGCAGCACTCAAAG
GAGTTGCAAGCACATGTTGACCAGATCACCGAGATGGCAGCAGTAATGAGAAAAGCTATTGAAA
TTGACGAACAGCAGGGTTGCAAGGAACAGGAGCGCATATTTCAACTTGAACAAGAAAACAAAGG
CTTGAGAGAGATCCTTCAGATAACTCGAGAATCCTTTTTGAACCTTCGGAAGGATGATGCGTCA
GAGAGTACATCTCTGTCCGCCTTAGTGACTAACAGTGACCTGAGTCTGAGGAAGAGCTGAGTGG
TTGGCTGTGGTCACTAAGACGGGCCCAGGAGTGAGTGGATGGATGAACATAAACCCAACTTCAG
TCAGCCTCTTTCCTCTAGTATGTCAGGGGCACTGGCGAAGAGACAGTAGCAGGATGTATAGCCA
GTGGTCATAAACTAGATCCCAGTCACAGCTCGACAGGAAAACCTGGGCCACAGAGTGAACATTG
AGTCTCCAAGGTGCTGCTGAGGACTGCAATTTGAGAAGTGCTGTTGGCCTCTTGGATGAGATAT
GGATCACCCTGAATGCTCCTAATAAACGTCGGAAAGCCTAAATTATCACAACTCCAAAAGAAGG
TTGGTGTGGTGTTCTGGATGGAAGACTTTGTTCTGAGTCCTGTCCTTCTGTTCAGTGTCAGAGT
CAGCATAGCTTATGTATGTACCGCTTCTGTCTCGGTGCTCCCATCCCCCTGCCCATCTGTTCAT
CGCCGGCAGTTCACATTTACAGGCTATAGGAATATGTCACTCGCATCACAAACTGAAGAAAGGA
ATATACTTGCACCTAGTTCCCATAACTCTTAGCTAGCAGTTATTCGTGACTTGCTTGAGTATAT
GTACCTCAGGAAGGAAGGAAAGACAAGAATATACTTTCTAAGAAAGACAGCCATATATAGACAC
ATTTAGTAGGTTAAACTACTTTGAGAGACTATGTTTGGTTCTCTGTTAACAATGAGCCTGGCTC
TTCCTCCTCTCTACATGATGTTTAAGGATACAGGACAGAGGGGTTGGGGATTTAGCTCAGTGGT
AGAGCGCTTGCCTAGCAACCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCTAAAAAAAGGGAAAA
AAAAAAGGATACAGGATAGCTCACTAGTACACAGAGTTGGCATATTTAATGTAATAAGATAGGT
ATGGTCATTTCCAAGTAAATTTGGAATTCCTTTGTTATTTAAGAAATCACTCTTCAAACATATA
AGTAGAAGCAGGTTCCAAAATCAAAGTTCTGGGACTGAGTCTAAACCCTGTTTAGTTCTTATAA
CCTGTGAGTTTTCCCTACAACCTGTGACTCAGAAACTGGCAGTGAAGTGTGGGCCCACAGGCAT
TGTGCTTTGCACTTTAAAAAAAAAAAAAGCTTAAGACCACAAGATAGAGAAGTGTGCTTTAATA
CCATTGCAACCTAAACTCTTCTGTAGTGATCAGAATAAAAGAATAAAAGATTGTGAAATACGGC
AAAAAATATACAATACTTGTATGTGAAGTTAGCACAGATAAAAAGTAAATCATTTGTAAGTACA
TATTACTTTGCAGTGTAATTTTATGTGTAATTTCATGTATTGGCAAAATTCATAGGACTTTTAC
TTGAGAACCTTTCATTCTGAAGTTTGAGGTGAGTGGGGTCATAGGTCAGGTAGGAAAGGGCCAG
TACCCCAGGTGATAAACCGTTGTCATGCAGAGGCCTTAATATTTTATATTATAGGTGAATTTAT
TTCTAAGACTTTTCTATTGGTTCTTGGAGAGTGTCCCTTAGTTTAGTGGTCATTCTTTCATGTA
GTTTGGTCCCAGGCCAGAATCTTAGAAGAAAGGCTACACAGTTGAGATGAGGCAGAATCAAGGA
GTGAGTAGTTCTATTGTGAAATGTTATTTCAGAAGTAATTATTTTTATAAAAAAATTATTTATC
CTTTGTCTTCTTGGATATAAGTTTAAGGTTGTGAATATTGAAAGACATTTGCATTGTTCTTAGC
AAGTTTTCCATCCCTCCTATCACCCCCCCCCAAAAAAAAAACAGCTTTCAGCTTACATACTTGA
GTGTGCTGAAGAGGAGCCTATTTTGTCAATAAAGACGAGTGTTTAAAACTGG

hide sequence

RefSeq Acc Id:

XM_008763402 ⟹ XP_008761624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,222,474 - 181,239,495 (+)	NCBI
mRatBN7.2	4	179,491,603 - 179,508,803 (+)	NCBI
Rnor_6.0	4	180,887,203 - 180,904,352 (+)	NCBI

Sequence:

show sequence

GCTTGTCGCTGTGTGGCTGCCAGTAGCGGAGGTTCTGGTCCGCCCGGGATGGAGCCGAGGCAAG
CGGGCTGCCGGATCCTCCCTGCCGCTGTGTGAGCAGGGCTGTGTGTCCGCTCGCTGAGCAGGCG
CAGCGAGGCCGCGGAGAGCACTCTCTGGGCGCCTCCATCTCGCGGGTGGTGGTCGCCGTCTCTG
ACGGCTGAGGGGGACTGAAGCTGAGTGGAAAAACACGAGTGGGTGAACCTCTGAGCCGGGCTCC
CTGTCTCCGTGCTCTCACTGAGCTCCTGCCGGGAACAGAGAAATGAGCTGCACCATTGAGAAGG
CACTTGCTGATGCTAAGGCCCTTGTTGAACGGTTGAGAGACCATGATGATGCAGCAGAGTCTCT
CATCGAACAGACCACTGCCCTCAGCAAGCGAGTGGAAGCCATGAAACAGTATCAGGAAGAAATC
CAAGAACTTAATGAAGTAGCAAGACATCGGCCACGATCCACACTAGTTATGGGAATCCAGCAAG
AAAACAGACAAATCAGAGAATTACAACAAGAGAACAAAGAACTGCGCACATCCTTGGAAGAGCA
CCAGTCTGCCTTGGAACTGATAATGAGCAAGTATCGAGAGCAGATGTTCAGATTGCTAATGGCC
AGCAAGAAGGACGACCCGGGCATAATAATGAAGTTAAAGGAGCAGCACTCAAAGATTGACATGG
TACATCGTAACAGCTGCGAAGGATTCTTCCTGGATGCATCTCGGCACATCCTTGAAGCACCTCA
GCACGGACTGGAGAGGAGGCACTTGGAAGCAAATCAGAATGTACACTAAATCAAACAGTCAACT
TTGGGGGAGTTGCAAGCACATGTTGACCAGATCACCGAGATGGCAGCAGTAATGAGAAAAGCTA
TTGAAATTGACGAACAGCAGGGTTGCAAG

hide sequence

Protein Sequences


Protein RefSeqs	NP_958824	(Get FASTA)	NCBI Sequence Viewer
	XP_006237750	(Get FASTA)	NCBI Sequence Viewer
	XP_008761624	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87696	(Get FASTA)	NCBI Sequence Viewer
	AAR20448	(Get FASTA)	NCBI Sequence Viewer
	AAR20449	(Get FASTA)	NCBI Sequence Viewer
	EDM01414	(Get FASTA)	NCBI Sequence Viewer
	EDM01415	(Get FASTA)	NCBI Sequence Viewer
	EDM01416	(Get FASTA)	NCBI Sequence Viewer
	EDM01417	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002476
	ENSRNOP00000002476.2
	ENSRNOP00000039568
GenBank Protein	Q6TA25	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_958824 ⟸ NM_201421

- UniProtKB:

Q6TA25 (UniProtKB/Swiss-Prot), Q5PPH1 (UniProtKB/Swiss-Prot), Q6TA26 (UniProtKB/Swiss-Prot), A6IN22 (UniProtKB/TrEMBL), A0A8L2QKW1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRST
LVMGIQQENRQIREFQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKE
QHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNELQAHVDQITEMAAVMRKAIEI
DEQQGCKEQQRIFQLEQENKGLREILQITRESFLNLQKDDASESTSLSALVTNSDLSLRKS

hide sequence

RefSeq Acc Id:	XP_006237750 ⟸ XM_006237688
- Peptide Label:	isoform X1
- UniProtKB:	A6IN23 (UniProtKB/TrEMBL), A0A8L2QKW1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRST LVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKE QHSKELQAHVDQITEMAAVMRKAIEIDEQQGCKEQERIFQLEQENKGLREILQITRESFLNLRK DDASESTSLSALVTNSDLSLRKS hide sequence

RefSeq Acc Id:	XP_008761624 ⟸ XM_008763402
- Peptide Label:	isoform X2
- UniProtKB:	A6IN24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSCTIEKALADAKALVERLRDHDDAAESLIEQTTALSKRVEAMKQYQEEIQELNEVARHRPRST LVMGIQQENRQIRELQQENKELRTSLEEHQSALELIMSKYREQMFRLLMASKKDDPGIIMKLKE QHSKIDMVHRNSCEGFFLDASRHILEAPQHGLERRHLEANQNVH hide sequence

Ensembl Acc Id:

ENSRNOP00000002476 ⟸ ENSRNOT00000002476

Ensembl Acc Id:

ENSRNOP00000039568 ⟸ ENSRNOT00000042270

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6TA25-F1-model_v2	AlphaFold	Q6TA25	1-253	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693503

Promoter ID:

EPDNEW_R4027

Type:

initiation region

Name:

Fgfr1op2_1

Description:

FGFR1 oncogene partner 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	180,887,207 - 180,887,267	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303233	AgrOrtholog
BioCyc Gene	G2FUF-42428	BioCyc
Ensembl Genes	ENSRNOG00000001811	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000002476	ENTREZGENE
	ENSRNOT00000002476.6	UniProtKB/Swiss-Prot
	ENSRNOT00000042270	ENTREZGENE
IMAGE_CLONE	IMAGE:7312267	IMAGE-MGC_LOAD
InterPro	SIKE	UniProtKB/Swiss-Prot
KEGG Report	rno:362463	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105259	IMAGE-MGC_LOAD
NCBI Gene	362463	ENTREZGENE
PANTHER	FGFR1 ONCOGENE PARTNER 2	UniProtKB/Swiss-Prot
	PTHR12186	UniProtKB/Swiss-Prot
Pfam	SIKE	UniProtKB/Swiss-Prot
PhenoGen	Fgfr1op2	PhenoGen
RatGTEx	ENSRNOG00000001811	RatGTEx
UniProt	A0A8L2QKW1	ENTREZGENE, UniProtKB/TrEMBL
	A6IN22	ENTREZGENE, UniProtKB/TrEMBL
	A6IN23	ENTREZGENE, UniProtKB/TrEMBL
	A6IN24	ENTREZGENE, UniProtKB/TrEMBL
	A6IN25_RAT	UniProtKB/TrEMBL
	FGOP2_RAT	UniProtKB/Swiss-Prot
	Q5PPH1	ENTREZGENE
	Q6TA25	ENTREZGENE
	Q6TA26	ENTREZGENE
UniProt Secondary	Q5PPH1	UniProtKB/Swiss-Prot
	Q6TA26	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Fgfr1op2	FGFR1 oncogene partner 2	Wit3.0	wound inducible transcript 3.0	Symbol and Name updated	1299863	APPROVED
2005-07-14	Wit3.0	wound inducible transcript 3.0			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in healing oral mucosal fibroblasts following tooth extraction	1303952
gene_transcript	alternative transcripts include 215 amino acid peptide (wit 3.0 alpha) and 253 amino acid peptide (wit 3.0 beta)	1303952

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD