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Gene: Pyroxd2 (pyridine nucleotide-disulphide oxidoreductase domain 2) Rattus norvegicus

Analyze

Symbol:

Pyroxd2

Name:

pyridine nucleotide-disulphide oxidoreductase domain 2

RGD ID:

1303232

Description:

Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial matrix. Orthologous to human PYROXD2 (pyridine nucleotide-disulphide oxidoreductase domain 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,2,2-tetramine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC94853; Phytn_dehydro and Pyr_redox domain containing protein RGD1303232; pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2; RGD1303232; similar to hypothetical protein MGC13047

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	251,472,609 - 251,498,316 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	251,471,849 - 251,498,008 (-)	Ensembl				GRCr8
mRatBN7.2	1	241,523,278 - 241,549,083 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	241,523,377 - 241,548,761 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	249,668,730 - 249,694,032 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	256,365,887 - 256,391,197 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	249,018,887 - 249,044,202 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	261,961,164 - 261,987,029 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	261,961,379 - 261,986,759 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	269,412,804 - 269,439,185 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	248,136,869 - 248,162,250 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	237,355,477 - 237,380,787 (-)	NCBI		Celera
RGSC_v3.1	1	248,251,457 - 248,276,838 (+)	NCBI
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Leigh disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2,2-tetramine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylparaben (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

chromium(6+) (ISO)

cobalt dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

diazinon (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

gentamycin (EXP)

inulin (ISO)

lead diacetate (EXP)

lipopolysaccharide (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (EXP)

sodium dichromate (EXP)

streptozocin (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloroethene (ISO)

thioacetamide (EXP)

trimellitic anhydride (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrion organization (ISO,ISS)

Cellular Component

mitochondrial matrix (IEA,ISO,ISS)

mitochondrion (ISO)

Molecular Function

oxidoreductase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:21873635	PMID:34800366

Genomics

Comparative Map Data

Pyroxd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	251,472,609 - 251,498,316 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	251,471,849 - 251,498,008 (-)	Ensembl				GRCr8
mRatBN7.2	1	241,523,278 - 241,549,083 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	241,523,377 - 241,548,761 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	249,668,730 - 249,694,032 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	256,365,887 - 256,391,197 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	249,018,887 - 249,044,202 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	261,961,164 - 261,987,029 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	261,961,379 - 261,986,759 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	269,412,804 - 269,439,185 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	248,136,869 - 248,162,250 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	237,355,477 - 237,380,787 (-)	NCBI		Celera
RGSC_v3.1	1	248,251,457 - 248,276,838 (+)	NCBI
Cytogenetic Map	1	q54	NCBI

PYROXD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	98,383,568 - 98,415,182 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	98,383,565 - 98,415,210 (-)	Ensembl			hg38	GRCh38
GRCh37	10	100,143,325 - 100,174,939 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	100,133,314 - 100,164,931 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	100,133,313 - 100,164,931	NCBI
Celera	10	93,879,973 - 93,911,599 (-)	NCBI		Celera
Cytogenetic Map	10	q24.2	NCBI
HuRef	10	93,768,157 - 93,799,813 (-)	NCBI		HuRef
CHM1_1	10	100,425,203 - 100,456,839 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	99,263,545 - 99,295,160 (-)	NCBI		T2T-CHM13v2.0

Pyroxd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	42,714,296 - 42,741,261 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	42,714,297 - 42,741,214 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	42,725,857 - 42,752,823 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	42,725,858 - 42,752,775 (-)	Ensembl			mm10	GRCm38
MGSCv37	19	42,800,348 - 42,827,265 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	42,779,168 - 42,806,086 (-)	NCBI		MGSCv36	mm8
Celera	19	43,518,088 - 43,547,814 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	36.56	NCBI

Pyroxd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	4,380,667 - 4,407,601 (-)	Ensembl
ChiLan1.0	NW_004955507	4,384,626 - 4,407,603 (-)	NCBI	ChiLan1.0	ChiLan1.0

PYROXD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	110,285,887 - 110,321,636 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	110,288,528 - 110,327,365 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	94,992,579 - 95,030,476 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	98,493,430 - 98,525,836 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	98,493,430 - 98,525,836 (-)	Ensembl			panPan2	panpan1.1

PYROXD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	11,517,812 - 11,545,514 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	11,517,860 - 11,545,337 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	11,701,334 - 11,729,016 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	11,842,921 - 11,870,608 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	11,842,870 - 11,898,210 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	11,526,666 - 11,554,346 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	11,565,088 - 11,592,768 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	11,704,804 - 11,732,500 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pyroxd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	35,393,497 - 35,419,124 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	1,432,691 - 1,458,188 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	1,432,673 - 1,458,240 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PYROXD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	109,704,136 - 109,728,874 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	109,701,807 - 109,730,459 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	119,115,753 - 119,128,176 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PYROXD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	91,538,785 - 91,575,177 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	91,542,326 - 91,574,327 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	52,441,392 - 52,478,024 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pyroxd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	9,980,203 - 10,006,663 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624737	9,970,383 - 10,006,694 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pyroxd2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	41,822,028 - 41,849,503 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pyroxd2
328 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	170
Count of miRNA genes:	126
Interacting mature miRNAs:	131
Transcripts:	ENSRNOT00000021257
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
2316896	Gluco57	Glucose level QTL 57	7.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	238398865	255849249	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
61400	Niddm1	Non-insulin dependent diabetes mellitus QTL 1	11		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	228180243	255849249	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	90	59	6	354	190	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021257 ⟹ ENSRNOP00000021257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	251,472,630 - 251,498,008 (-)	Ensembl
mRatBN7.2 Ensembl	1	241,523,377 - 241,548,761 (-)	Ensembl
Rnor_6.0 Ensembl	1	261,961,379 - 261,986,759 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153698 ⟹ ENSRNOP00000100434

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	251,471,849 - 251,498,008 (-)	Ensembl

RefSeq Acc Id:

NM_001004261 ⟹ NP_001004261

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	251,472,629 - 251,498,008 (-)	NCBI
mRatBN7.2	1	241,523,376 - 241,548,761 (-)	NCBI
Rnor_6.0	1	261,961,378 - 261,986,759 (-)	NCBI
Rnor_5.0	1	269,412,804 - 269,439,185 (-)	NCBI
RGSC_v3.4	1	248,136,869 - 248,162,250 (+)	RGD
Celera	1	237,355,477 - 237,380,787 (-)	RGD

Sequence:

show sequence

GAAATGGCTGCCAGCGGCCGAGGTCTCAGCAGGGCCTTGCACTCCACTCCCTGTCCTGCTTGGA
AACGAGTTCAGTCGGGAGCCAACGGGTGCCTGAAGCCCGAGTACGATGCGGTGGTGATAGGAGC
AGGACACAATGGGCTGGTGGCAGCAGCGTACCTCCAGAGACTAGGGGTGAACACCGCGGTCTTC
GAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCTGGATTCAAGTTCT
CCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGACCTGGAGCTGAAGAA
ACATGGGCTGAAACTTCATCTGAGAAATCCCTACTCCTTCACCCCCATGCTGGAGGAGGGCACG
CTGAGCAAGCCGCCCAGGTCCCTCCTGCTGGGCACAGACGTGGCTGAAAACCAGAAGCAAATCT
CTCAGTTCTCCCGGAAGGATGCTCAGGCCTTTCCCAGATACGAGGAGTTCATGAAGCGCTTGGT
GCTAGCCATTGACCCCCTTCTGGACGCAGCTCCAGTGGACATAGCAGCCCTCCAGCATGGCTCC
CTGCTGCAGAGGCTCAGGGCACTGTCCACCCTGAGGCCCCTGCTGAAAGCAGGGCGCACCCTGG
GAGCCCAGCTCCCCCAGTACTACGAGGTCCTCACAGCCCCCATTTCCAAGGTGCTGGACCAATG
GTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGACGCTGTGATTGGAGCAATGACGAGT
CCTCACACTCCGGGGAGTGGGTATGTGCTGCTACATCATGTGATGGGCAGCCTGGAGGGGATGC
AGGGTGCCTGGAGCTATGTCCAGGGTGGCATGGGTGCCCTCTCAGATGCCATTGCAAGCTCGGC
TACTGCACATGGAGCAAGTATCTTCACAGAGAAGACTGTGGCTAAGGTGCAAGTGAACAGCGAA
GGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGAGTCGTCTTGTCCT
GTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAGGAGTGGCTTCCTGGGGCCTTTGT
GAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATGTGGCTGTGGACAGG
CTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGCCCACCATCAGTGTT
CCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGCGG
CCTACCTTCCCAAAGACCTATGATTGAGCTCTGCATCCCTTCATCGCTGGACCCCACCCTGGCT
CCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCA
AGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAGTGTTTGACTGCATCGAGGCCTA
TGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCACAGGACCTAGAGAGG
ATCTTCGGGCTTCCTGGAGGGAACATATTTCATGGTGCCATGTCCCTGGACCAGCTCTACTTTG
CCCGACCAGTGCCCCAACACTCTGACTACAGATGCCCCGTGCAAGGCCTATACCTCTGTGGGAG
TGGGGCCCATCCTGGAGGAGGCGTCATGGGAGCGGCTGGACGGAATGCAGCCCACATAGTCTTT
AGGGACCTCAAGAACATGTGATGCTGGACCAGCTCTGAGCCCAAGGAGAAAAGTTTTCCCTGCA
CTTTGAGCCGCCTAGCAGGCCATCTTCCCATGATGCCCTGCTTCCCATGATGCCACTGGAGACA
ACTGCACTAGCAAGGCGCCACTGTTTCTTAATCAAGGACTCAGTTACATTTAACACAATCTCAC
CCGTGCCCTTGGATTAGCTGGTTTTGTCTGGTTAAAAACAATGTTTTGTAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006231394 ⟹ XP_006231456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	251,472,609 - 251,498,297 (-)	NCBI
mRatBN7.2	1	241,523,278 - 241,549,055 (-)	NCBI
Rnor_6.0	1	261,961,164 - 261,987,027 (-)	NCBI
Rnor_5.0	1	269,412,804 - 269,439,185 (-)	NCBI

Sequence:

show sequence

CTTCTAGTCCACCACTAGGCCGGGTAGAACTTAGTTAACTGTTCTCCTTTTGGTCCGTGCTCGC
TTGAGTCCTGGAGGCGACACAGACTGCCAATTCTTAGCCTACACGCCCCCTTCCCAAGACTAGC
TTGCGCAAACTCAGAGCCACAGAAGCTCAGACCCTGGGAAATCGTGGCCCAAGGCCAAGGCTGA
CACTGGACTGTAACTCCTAGCCCCTCCCCCTGCCTGGGCCTCTGGAAAGCCTACTGCAAGCAAA
TTGCTGGGGGCAGAAATGGCTGCCAGCGGCCGAGGTCTCAGCAGGGCCTTGCACTCCACTCCCT
GTCCTGCTTGGAAACGAGTTCAGTCGGGAGCCAACGGGTGCCTGAAGCCCGAGTACGATGCGGT
GGTGATAGGAGCAGGACACAATGGGCTGGTGGCAGCAGCGTACCTCCAGAGACTAGGGGTGAAC
ACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCTG
GATTCAAGTTCTCCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGACCT
GGAGCTGAAGAAACATGGGCTGAAACTTCATCTGAGAAATCCCTACTCCTTCACCCCCATGCTG
GAGGAGGGCACGCTGAGCAAGCCGCCCAGGTCCCTCCTGCTGGGCACAGACGTGGCTGAAAACC
AGAAGCAAATCTCTCAGTTCTCCCGGAAGGATGCTCAGGCCTTTCCCAGATACGAGGAGTTCAT
GAAGCGCTTGGTGCTAGCCATTGACCCCCTTCTGGACGCAGCTCCAGTGGACATAGCAGCCCTC
CAGCATGGCTCCCTGCTGCAGAGGCTCAGGGCACTGTCCACCCTGAGGCCCCTGCTGAAAGCAG
GGCGCACCCTGGGAGCCCAGCTCCCCCAGTACTACGAGGTCCTCACAGCCCCCATTTCCAAGGT
GCTGGACCAATGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGACGCTGTGATTGGA
GCAATGACGAGTCCTCACACTCCGGGGAGTGGGTATGTGCTGCTACATCATGTGATGGGCAGCC
TGGAGGGGATGCAGGGTGCCTGGAGCTATGTCCAGGGTGGCATGGGTGCCCTCTCAGATGCCAT
TGCAAGCTCGGCTACTGCACATGGAGCAAGTATCTTCACAGAGAAGACTGTGGCTAAGGTGCAA
GTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGAG
TCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAGGAGTGGCTTCC
TGGGGCCTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATGTG
GCTGTGGACAGGCTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGCCC
ACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGA
TGCCAAGGGCGGCCTACCTTCCCAAAGACCTATGATTGAGCTCTGCATCCCTTCATCGCTGGAC
CCCACCCTGGCTCCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACACCC
TGGCAGGAGGCAAGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAGTGTTTGACTG
CATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCACAG
GACCTAGAGAGGATCTTCGGGCTTCCTGGAGGGAACATATTTCATGGTGCCATGTCCCTGGACC
AGCTCTACTTTGCCCGACCAGTGCCCCAACACTCTGACTACAGATGCCCCGTGCAAGGCCTATA
CCTCTGTGGGAGTGGGGCCCATCCTGGTGACTTCACTGTGGTTGTCATCTCCTGGCGACGCCCT
CTCTGGCAAGTGGGAGGAGGCGTCATGGGAGCGGCTGGACGGAATGCAGCCCACATAGTCTTTA
GGGACCTCAAGAACATGTGATGCTGGACCAGCTCTGAGCCCAAGGAGAAAAGTTTTCCCTGCAC
TTTGAGCCGCCTAGCAGGCCATCTTCCCATGATGCCCTGCTTCCCATGATGCCACTGGAGACAA
CTGCACTAGCAAGGCGCCACTGTTTCTTAATCAAGGACTCAGTTACATTTAACACAATCTCACC
CGTGCCCTTGGATTAGCTGGTTTTGTCTGGTTAAAAACAATGTTTTGTATAAAGACTGCTTGTA
TTGTTTTTCTATGTGTCTGTAGCTTGGCGGGAGCTTGGCCTACCAGCTGGACATTGCCCAACTA
ATGAATGGAAGAATTTGGACCAACTGTTCCCTTCTTGTCAGGGGTTTCCCACCACCAACTGATT
GGAGGCCTGGCCTGCCAACACCCAGTCAACTACCGTCAAATTCCTGTCACTATAAAACAAACTC
GCAGTGA

hide sequence

RefSeq Acc Id:

XM_006231396 ⟹ XP_006231458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	251,473,654 - 251,498,300 (-)	NCBI
mRatBN7.2	1	241,524,401 - 241,549,057 (-)	NCBI
Rnor_6.0	1	261,962,455 - 261,987,028 (-)	NCBI
Rnor_5.0	1	269,412,804 - 269,439,185 (-)	NCBI

Sequence:

show sequence

CCTTCTAGTCCACCACTAGGCCGGGTAGAACTTAGTTAACTGTTCTCCTTTTGGTCCGTGCTCG
CTTGAGTCCTGGAGGCGACACAGACTGCCAATTCTTAGCCTACACGCCCCCTTCCCAAGACTAG
CTTGCGCAAACTCAGAGCCACAGAAGCTCAGACCCTGGGAAATCGTGGCCCAAGGCCAAGGCTG
ACACTGGACTGTAACTCCTAGCCCCTCCCCCTGCCTGGGCCTCTGGAAAGCCTACTGCAAGCAA
ATTGCTGGGGGCAGAAATGGCTGCCAGCGGCCGAGGTCTCAGCAGGGCCTTGCACTCCACTCCC
TGTCCTGCTTGGAAACGAGTTCAGTCGGGAGCCAACGGGTGCCTGAAGCCCGAGTACGATGCGG
TGGTGATAGGAGCAGGACACAATGGGCTGGTGGCAGCAGCGTACCTCCAGAGACTAGGGGTGAA
CACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCT
GGATTCAAGTTCTCCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGACC
TGGAGCTGAAGAAACATGGGCTGAAACTTCATCTGAGAAATCCCTACTCCTTCACCCCCATGCT
GGAGGAGGGCACGCTGAGCAAGCCGCCCAGGTCCCTCCTGCTGGGCACAGACGTGGCTGAAAAC
CAGAAGCAAATCTCTCAGTTCTCCCGGAAGGATGCTCAGGCCTTTCCCAGATACGAGGAGTTCA
TGAAGCGCTTGGTGCTAGCCATTGACCCCCTTCTGGACGCAGCTCCAGTGGACATAGCAGCCCT
CCAGCATGGCTCCCTGCTGCAGAGGCTCAGGGCACTGTCCACCCTGAGGCCCCTGCTGAAAGCA
GGGCGCACCCTGGGAGCCCAGCTCCCCCAGTACTACGAGGTCCTCACAGCCCCCATTTCCAAGG
TGCTGGACCAATGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGACGCTGTGATTGG
AGCAATGACGAGTCCTCACACTCCGGGGAGTGGGTATGTGCTGCTACATCATGTGATGGGCAGC
CTGGAGGGGATGCAGGGTGCCTGGAGCTATGTCCAGGGTGGCATGGGTGCCCTCTCAGATGCCA
TTGCAAGCTCGGCTACTGCACATGGAGCAAGTATCTTCACAGAGAAGACTGTGGCTAAGGTGCA
AGTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGA
GTCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAGGAGTGGCTTC
CTGGGGCCTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATGT
GGCTGTGGACAGGCTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGCC
CACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAG
ATGCCAAGGGCGGCCTACCTTCCCAAAGACCTATGATTGAGCTCTGCATCCCTTCATCGCTGGA
CCCCACCCTGGCTCCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACACC
CTGGCAGGAGGCAAGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAGTGTTTGACT
GCATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCACA
GGACCTAGAGAGGATCTTCGGGCTTCCTGGAGGGCACTCCTGCACTAACGGCTGGAACCTGGGA
ACCCTGCCTCCCCACAGCACTCCTGCACTAACGGCTGGAACCCTATAACCTTGCCC

hide sequence

RefSeq Acc Id:

XM_008760424 ⟹ XP_008758646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	251,472,609 - 251,498,302 (-)	NCBI
mRatBN7.2	1	241,523,278 - 241,549,065 (-)	NCBI
Rnor_6.0	1	261,961,164 - 261,987,029 (-)	NCBI

Sequence:

show sequence

CCCTTCTAGTCCACCACTAGGCCGGGTAGAACTTAGTTAACTGTTCTCCTTTTGGTCCGTGCTC
GCTTGAGTCCTGGAGGCGACACAGACTGCCAATTCTTAGCCTACACGCCCCCTTCCCAAGACTA
GCTTGCGCAAACTCAGAGCCACAGAAGCTCAGACCCTGGGAAATCGTGGCCCAAGGCCAAGGCT
GACACTGGACTGTAACTCCTAGCCCCTCCCCCTGCCTGGGCCTCTGGAAAGCCTACTGCAAGCA
AATTGCTGGGGGCAGAAATGGCTGCCAGCGGCCGAGGTCTCAGCAGGGCCTTGCACTCCACTCC
CTGTCCTGCTTGGAAACGAGTTCAGTCGGGAGCCAACGGGTGCCTGAAGCCCGAGTACGATGCG
GTGGTGATAGGAGCAGGACACAATGGGCTGGTGGCAGCAGCGTACCTCCAGAGACTAGGGGTGA
ACACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCC
TGGATTCAAGTTCTCCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGAC
CTGGAGCTGAAGAAACATGGGCTGAAACTTCATCTGAGAAATCCCTACTCCTTCACCCCCATGC
TGGAGGAGGGCACGCTGAGCAAGCCGCCCAGGTCCCTCCTGCTGGGCACAGACGTGGCTGAAAA
CCAGAAGCAAATCTCTCAGTTCTCCCGGAAGGATGCTCAGGCCTTTCCCAGATACGAGGAGTTC
ATGAAGCGCTTGGTGCTAGCCATTGACCCCCTTCTGGACGCAGCTCCAGTGGACATAGCAGCCC
TCCAGCATGGCTCCCTGCTGCAGAGGCTCAGGGCACTGTCCACCCTGAGGCCCCTGCTGAAAGC
AGGGCGCACCCTGGGAGCCCAGCTCCCCCAGTACTACGAGGTCCTCACAGCCCCCATTTCCAAG
GTGCTGGACCAATGGTTTGAGTCTGAGCCTCTGAAGGCAACTCTGGCAACAGACGCTGTGATTG
GAGCAATGACGAGTCCTCACACTCCGGGGAGTGGGTATGTGCTGCTACATCATGTGATGGGCAG
CCTGGAGGGGATGCAGGGTGCCTGGAGCTATGTCCAGGGTGGCATGGGTGCCCTCTCAGATGCC
ATTGCAAGCTCGGCTACTGCACATGGAGCAAGTATCTTCACAGAGAAGACTGTGGCTAAGGTGC
AAGTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAG
AGTCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAGGAGTGGCTT
CCTGGGGCCTTTGTGAAGAGAATCTCCCAGCTGGACACCCAGTCTCCCGTTACCAAGATCAATG
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGC
CCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAA
GATGCCAAGGGCGGCCTACCTTCCCAAAGACCTATGATTGAGCTCTGCATCCCTTCATCGCTGG
ACCCCACCCTGGCTCCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACAC
CCTGGCAGGAGGCAAGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAGTGTTTGAC
TGCATCGAGGCCTATGCCCCCGGCTTCAAGAGATCTGTGCTGGGCAGAGATATCCTCACCCCAC
AGGACCTAGAGAGGATCTTCGGGCTTCCTGGAGGGAACATATTTCATGGTGCCATGTCCCTGGA
CCAGCTCTACTTTGCCCGACCAGTGCCCCAACACTCTGACTACAGATGCCCCGTGCAAGGCCTA
TACCTCTGTGGGAGTGGGGCCCATCCTGGTGACTTCACTGTGGTTGTCATCTCCTGGCGACGCC
CTCTCTGGCAAGTGGGTGAGGCTCCCATAAAGAGCTGCCCTGATTCTTACACTTCAGCTTTGCC
TGCTAAACTGCCAGGTGCCCCCCACCCCCCGCTGAGGCAGGGAGGTTGGCAGAGTGTGGGACAA
GAGACCAGTGCGGCTACATCCTGCCTACTCCCCCCAGCTGTGTGTGTGGGAGCTACAGGGAGCC
TTGGCAGTTGTTCCAGATTGTGGTTGCTGTCCGTGAGTCCTGCCCTGTCCCTTTCTGGTGGGCT
TCTGAGCAGACCTTTGGTTCCAGGAGGAGGCGTCATGGGAGCGGCTGGACGGAATGCAGCCCAC
ATAGTCTTTAGGGACCTCAAGAACATGTGATGCTGGACCAGCTCTGAGCCCAAGGAGAAAAGTT
TTCCCTGCACTTTGAGCCGCCTAGCAGGCCATCTTCCCATGATGCCCTGCTTCCCATGATGCCA
CTGGAGACAACTGCACTAGCAAGGCGCCACTGTTTCTTAATCAAGGACTCAGTTACATTTAACA
CAATCTCACCCGTGCCCTTGGATTAGCTGGTTTTGTCTGGTTAAAAACAATGTTTTGTATAAAG
ACTGCTTGTATTGTTTTTCTATGTGTCTGTAGCTTGGCGGGAGCTTGGCCTACCAGCTGGACAT
TGCCCAACTAATGAATGGAAGAATTTGGACCAACTGTTCCCTTCTTGTCAGGGGTTTCCCACCA
CCAACTGATTGGAGGCCTGGCCTGCCAACACCCAGTCAACTACCGTCAAATTCCTGTCACTATA
AAACAAACTCGCAGTGA

hide sequence

RefSeq Acc Id:

XM_039080124 ⟹ XP_038936052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	251,472,609 - 251,498,008 (-)	NCBI
mRatBN7.2	1	241,523,278 - 241,548,770 (-)	NCBI

RefSeq Acc Id:

XR_005486952

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	251,478,620 - 251,498,316 (-)	NCBI
mRatBN7.2	1	241,526,079 - 241,549,083 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004261	(Get FASTA)	NCBI Sequence Viewer
	XP_006231456	(Get FASTA)	NCBI Sequence Viewer
	XP_006231458	(Get FASTA)	NCBI Sequence Viewer
	XP_008758646	(Get FASTA)	NCBI Sequence Viewer
	XP_038936052	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79368	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021257
	ENSRNOP00000100434
GenBank Protein	Q68FT3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004261 ⟸ NM_001004261

- UniProtKB:

Q68FT3 (UniProtKB/Swiss-Prot), A0A8L2QB18 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAASGRGLSRALHSTPCPAWKRVQSGANGCLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE
RRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLKLHLRNPYSFTPMLEEGTL
SKPPRSLLLGTDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSL
LQRLRALSTLRPLLKAGRTLGAQLPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSP
HTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEG
RVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRL
PNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAP
TGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDILTPQDLERI
FGLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHIVFR
DLKNM

hide sequence

RefSeq Acc Id:	XP_006231456 ⟸ XM_006231394
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2QB18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASGRGLSRALHSTPCPAWKRVQSGANGCLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE RRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLKLHLRNPYSFTPMLEEGTL SKPPRSLLLGTDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSL LQRLRALSTLRPLLKAGRTLGAQLPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSP HTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEG RVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRL PNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAP TGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDILTPQDLERI FGLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGDFTVVVISWRRPLWQVG GGVMGAAGRNAAHIVFRDLKNM hide sequence

RefSeq Acc Id:	XP_006231458 ⟸ XM_006231396
- Peptide Label:	isoform X4
- UniProtKB:	A0A8L2QB18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASGRGLSRALHSTPCPAWKRVQSGANGCLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE RRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLKLHLRNPYSFTPMLEEGTL SKPPRSLLLGTDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSL LQRLRALSTLRPLLKAGRTLGAQLPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSP HTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEG RVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRL PNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAP TGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDILTPQDLERI FGLPGGHSCTNGWNLGTLPPHSTPALTAGTL hide sequence

RefSeq Acc Id:	XP_008758646 ⟸ XM_008760424
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QB18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASGRGLSRALHSTPCPAWKRVQSGANGCLKPEYDAVVIGAGHNGLVAAAYLQRLGVNTAVFE RRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLKLHLRNPYSFTPMLEEGTL SKPPRSLLLGTDVAENQKQISQFSRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSL LQRLRALSTLRPLLKAGRTLGAQLPQYYEVLTAPISKVLDQWFESEPLKATLATDAVIGAMTSP HTPGSGYVLLHHVMGSLEGMQGAWSYVQGGMGALSDAIASSATAHGASIFTEKTVAKVQVNSEG RVQGVVLQGGEEVRSRVVLSCASPQVTFLELTPQEWLPGAFVKRISQLDTQSPVTKINVAVDRL PNFQAAPNAPGDQPQAHHQCSIHLNCEDTLLLHQAFEDAKGGLPSQRPMIELCIPSSLDPTLAP TGCHVVSLFTQYTPYTLAGGKVWDEQKKNTYADKVFDCIEAYAPGFKRSVLGRDILTPQDLERI FGLPGGNIFHGAMSLDQLYFARPVPQHSDYRCPVQGLYLCGSGAHPGDFTVVVISWRRPLWQVG EAPIKSCPDSYTSALPAKLPGAPHPPLRQGGWQSVGQETSAATSCLLPPAVCVGATGSLGSCSR LWLLSVSPALSLSGGLLSRPLVPGGGVMGAAGRNAAHIVFRDLKNM hide sequence

Ensembl Acc Id:

ENSRNOP00000021257 ⟸ ENSRNOT00000021257

RefSeq Acc Id:	XP_038936052 ⟸ XM_039080124
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000100434 ⟸ ENSRNOT00000153698

Protein Domains

Amine oxidase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q68FT3-F1-model_v2	AlphaFold	Q68FT3	1-581	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690921

Promoter ID:

EPDNEW_R1446

Type:

initiation region

Name:

Pyroxd2_1

Description:

pyridine nucleotide-disulphide oxidoreductase domain 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	261,986,796 - 261,986,856	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303232	AgrOrtholog
BioCyc Gene	G2FUF-55634	BioCyc
Ensembl Genes	ENSRNOG00000015807	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000021257	ENTREZGENE
	ENSRNOT00000153698	ENTREZGENE
Gene3D-CATH	3.50.50.60	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109628	IMAGE-MGC_LOAD
InterPro	Amino_oxidase	UniProtKB/Swiss-Prot
	FAD/NAD-bd_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:309381	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94853	IMAGE-MGC_LOAD
NCBI Gene	309381	ENTREZGENE
PANTHER	PHYTOENE DEHYDROGENASE	UniProtKB/Swiss-Prot
	PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	Amino_oxidase	UniProtKB/Swiss-Prot
PhenoGen	Pyroxd2	PhenoGen
RatGTEx	ENSRNOG00000015807	RatGTEx
Superfamily-SCOP	SSF51905	UniProtKB/Swiss-Prot
UniProt	A0A8L2QB18	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJL9_RAT	UniProtKB/TrEMBL
	PYRD2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-06-12	Pyroxd2	pyridine nucleotide-disulphide oxidoreductase domain 2	RGD1303232	Phytn_dehydro and Pyr_redox domain containing protein RGD1303232	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	RGD1303232	Phytn_dehydro and Pyr_redox domain containing protein RGD1303232	MGC94853	similar to hypothetical protein MGC13047	Symbol and Name updated	1299863	APPROVED
2005-09-30	MGC94853				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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