Farsb (phenylalanyl-tRNA synthetase subunit beta) - Rat Genome Database

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Gene: Farsb (phenylalanyl-tRNA synthetase subunit beta) Rattus norvegicus
Analyze
Symbol: Farsb
Name: phenylalanyl-tRNA synthetase subunit beta
RGD ID: 1303210
Description: Predicted to enable several functions, including ATP binding activity; aminoacyl-tRNA ligase activity; and magnesium ion binding activity. Predicted to contribute to phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to be located in cytoplasm. Predicted to be part of phenylalanine-tRNA ligase complex. Orthologous to human FARSB (phenylalanyl-tRNA synthetase subunit beta); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Farslb; MGC94847; phenylalanine--tRNA ligase beta subunit; phenylalanine-tRNA synthetase-like, beta subunit; phenylalanyl-tRNA synthetase beta chain; phenylalanyl-tRNA synthetase, beta subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,336,321 - 87,395,546 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl987,336,326 - 87,395,505 (-)EnsemblGRCr8
mRatBN7.2979,887,852 - 79,947,082 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl979,887,842 - 79,947,045 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx988,317,637 - 88,376,818 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0993,430,056 - 93,490,053 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0991,829,079 - 91,888,260 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0984,324,456 - 84,383,674 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,324,442 - 84,383,687 (-)Ensemblrn6Rnor6.0
Rnor_5.0984,083,341 - 84,142,523 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4977,806,573 - 77,865,757 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera977,396,205 - 77,455,355 (-)NCBICelera
RGSC_v3.1977,989,996 - 78,049,176 (-)NCBI
Cytogenetic Map9q33NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-phenylbutyric acid  (ISO)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDE  (ISO)
dibenzo[a,l]pyrene  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
fenthion  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
furfural  (ISO)
glafenine  (EXP)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
menadione  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tanespimycin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
phenylalanine-tRNA ligase complex  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19946888   PMID:20223217  


Genomics

Comparative Map Data
Farsb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,336,321 - 87,395,546 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl987,336,326 - 87,395,505 (-)EnsemblGRCr8
mRatBN7.2979,887,852 - 79,947,082 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl979,887,842 - 79,947,045 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx988,317,637 - 88,376,818 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0993,430,056 - 93,490,053 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0991,829,079 - 91,888,260 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0984,324,456 - 84,383,674 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,324,442 - 84,383,687 (-)Ensemblrn6Rnor6.0
Rnor_5.0984,083,341 - 84,142,523 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4977,806,573 - 77,865,757 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera977,396,205 - 77,455,355 (-)NCBICelera
RGSC_v3.1977,989,996 - 78,049,176 (-)NCBI
Cytogenetic Map9q33NCBI
FARSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,566,899 - 222,656,092 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,566,899 - 222,656,313 (-)Ensemblhg38GRCh38
GRCh372223,431,618 - 223,520,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,144,406 - 223,229,071 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342223,260,760 - 223,346,310NCBI
Celera2217,204,356 - 217,288,733 (-)NCBICelera
Cytogenetic Map2q36.1NCBI
HuRef2215,289,904 - 215,374,144 (-)NCBIHuRef
CHM1_12223,442,666 - 223,527,209 (-)NCBICHM1_1
T2T-CHM13v2.02223,052,236 - 223,141,156 (-)NCBIT2T-CHM13v2.0
Farsb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,394,593 - 78,465,530 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl178,394,612 - 78,465,534 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38178,417,958 - 78,488,897 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,417,975 - 78,488,897 (-)Ensemblmm10GRCm38
MGSCv37178,421,411 - 78,485,421 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36178,307,983 - 78,371,993 (-)NCBIMGSCv36mm8
Celera178,895,232 - 78,957,096 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map140.44NCBI
Farsb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545311,176,432 - 11,240,780 (+)Ensembl
ChiLan1.0NW_00495545311,176,481 - 11,237,243 (+)NCBIChiLan1.0ChiLan1.0
FARSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213125,186,179 - 125,414,446 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B125,201,208 - 125,429,414 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B109,813,000 - 109,897,159 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B228,394,238 - 228,478,345 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B228,394,238 - 228,478,345 (-)EnsemblpanPan2panpan1.1
FARSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13728,647,114 - 28,716,193 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3728,647,115 - 28,716,198 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3729,483,532 - 29,552,756 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03728,671,627 - 28,741,798 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13728,583,297 - 28,652,114 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03728,515,013 - 28,583,765 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03728,533,289 - 28,602,513 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Farsb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303178,181,689 - 178,261,741 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365694,523,046 - 4,604,560 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365694,524,525 - 4,604,539 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FARSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115124,472,236 - 124,555,042 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215137,963,814 - 137,984,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FARSB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110108,492,463 - 108,568,226 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10108,492,652 - 108,568,293 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604090,804,343 - 90,888,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Farsb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248232,559,756 - 2,627,606 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248232,559,757 - 2,627,606 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Farsb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14151,634,775 - 151,698,777 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Farsb
292 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:44
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000019685
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)986720043110356905Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)986720043121768150Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)98672213292642305Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)985262459109044727Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)985262459118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat

Markers in Region
RH134502  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,888,046 - 79,888,246 (+)MAPPERmRatBN7.2
Rnor_6.0984,324,651 - 84,324,850NCBIRnor6.0
Rnor_5.0984,083,536 - 84,083,735UniSTSRnor5.0
RGSC_v3.4977,806,768 - 77,806,967UniSTSRGSC3.4
Celera977,396,400 - 77,396,599UniSTS
RH 3.4 Map9728.7UniSTS
Cytogenetic Map9q33UniSTS
RH134923  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,947,723 - 79,947,903 (+)MAPPERmRatBN7.2
Rnor_6.0984,384,325 - 84,384,504NCBIRnor6.0
Rnor_5.0984,143,210 - 84,143,389UniSTSRnor5.0
RGSC_v3.4977,866,444 - 77,866,623UniSTSRGSC3.4
Celera977,456,042 - 77,456,221UniSTS
RH 3.4 Map9728.8UniSTS
Cytogenetic Map9q33UniSTS
RH139517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,902,416 - 79,902,625 (+)MAPPERmRatBN7.2
Rnor_6.0984,339,018 - 84,339,226NCBIRnor6.0
Rnor_5.0984,097,903 - 84,098,111UniSTSRnor5.0
RGSC_v3.4977,821,137 - 77,821,345UniSTSRGSC3.4
Celera977,410,733 - 77,410,941UniSTS
RH 3.4 Map9728.5UniSTS
Cytogenetic Map9q33UniSTS
RH140352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,902,516 - 79,902,651 (+)MAPPERmRatBN7.2
Rnor_6.0984,339,118 - 84,339,252NCBIRnor6.0
Rnor_5.0984,098,003 - 84,098,137UniSTSRnor5.0
RGSC_v3.4977,821,237 - 77,821,371UniSTSRGSC3.4
Celera977,410,833 - 77,410,967UniSTS
Cytogenetic Map9q33UniSTS
BE117296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2979,897,056 - 79,897,253 (+)MAPPERmRatBN7.2
Rnor_6.0984,333,659 - 84,333,855NCBIRnor6.0
Rnor_5.0984,092,544 - 84,092,740UniSTSRnor5.0
RGSC_v3.4977,815,778 - 77,815,974UniSTSRGSC3.4
Celera977,405,374 - 77,405,570UniSTS
RH 3.4 Map9733.1UniSTS
Cytogenetic Map9q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019685   ⟹   ENSRNOP00000019685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl987,336,326 - 87,395,505 (-)Ensembl
mRatBN7.2 Ensembl979,887,842 - 79,947,036 (-)Ensembl
Rnor_6.0 Ensembl984,324,442 - 84,383,687 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094684   ⟹   ENSRNOP00000097472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl979,887,874 - 79,947,045 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107975   ⟹   ENSRNOP00000097156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl987,336,326 - 87,395,505 (-)Ensembl
mRatBN7.2 Ensembl979,887,874 - 79,947,045 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118347   ⟹   ENSRNOP00000097872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl987,353,200 - 87,395,505 (-)Ensembl
mRatBN7.2 Ensembl979,904,604 - 79,947,042 (-)Ensembl
RefSeq Acc Id: NM_001004252   ⟹   NP_001004252
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,336,321 - 87,395,505 (-)NCBI
mRatBN7.2979,887,852 - 79,947,037 (-)NCBI
Rnor_6.0984,324,456 - 84,383,638 (-)NCBI
Rnor_5.0984,083,341 - 84,142,523 (-)NCBI
RGSC_v3.4977,806,573 - 77,865,757 (-)RGD
Celera977,396,205 - 77,455,355 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245189   ⟹   XP_006245251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,336,702 - 87,395,546 (-)NCBI
mRatBN7.2979,888,252 - 79,947,082 (-)NCBI
Rnor_6.0984,324,907 - 84,383,674 (-)NCBI
Rnor_5.0984,083,341 - 84,142,523 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001004252 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245251 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79364 (Get FASTA)   NCBI Sequence Viewer  
  EDL75470 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019685
  ENSRNOP00000019685.5
  ENSRNOP00000097156.1
  ENSRNOP00000097872
  ENSRNOP00000097872.2
RefSeq Acc Id: NP_001004252   ⟸   NM_001004252
- UniProtKB: Q68FT7 (UniProtKB/TrEMBL),   F7FM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245251   ⟸   XM_006245189
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ATG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019685   ⟸   ENSRNOT00000019685
Ensembl Acc Id: ENSRNOP00000097872   ⟸   ENSRNOT00000118347
Ensembl Acc Id: ENSRNOP00000097156   ⟸   ENSRNOT00000107975
Ensembl Acc Id: ENSRNOP00000097472   ⟸   ENSRNOT00000094684
Protein Domains
B5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FT7-F1-model_v2 AlphaFold Q68FT7 1-589 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696788
Promoter ID:EPDNEW_R7312
Type:multiple initiation site
Name:Farsb_1
Description:phenylalanyl-tRNA synthetase, beta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0984,383,646 - 84,383,706EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303210 AgrOrtholog
BioCyc Gene G2FUF-27024 BioCyc
BioCyc Pathway TRNA-CHARGING-PWY [tRNA charging] BioCyc
BioCyc Pathway Image TRNA-CHARGING-PWY BioCyc
Ensembl Genes ENSRNOG00000014119 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019685 ENTREZGENE
  ENSRNOT00000019685.7 UniProtKB/TrEMBL
  ENSRNOT00000107975.2 UniProtKB/TrEMBL
  ENSRNOT00000118347 ENTREZGENE
  ENSRNOT00000118347.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.56.10 UniProtKB/TrEMBL
  3.50.40.10 UniProtKB/TrEMBL
  Bira Bifunctional Protein, Domain 2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7109296 IMAGE-MGC_LOAD
InterPro aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  B3/B4_tRNA-bd UniProtKB/TrEMBL
  DNA-bd_dom_put UniProtKB/TrEMBL
  IPR005147 UniProtKB/TrEMBL
  Phe-tRNA-ligase_IIc_bsu UniProtKB/TrEMBL
  Phe-tRNA-synth_IIc_bsu_arc UniProtKB/TrEMBL
  Phe-tRNA_synthase_B3/B4 UniProtKB/TrEMBL
  PheRS_beta_core UniProtKB/TrEMBL
  PhetRS_B1 UniProtKB/TrEMBL
KEGG Report rno:301544 UniProtKB/TrEMBL
MGC_CLONE MGC:94847 IMAGE-MGC_LOAD
NCBI Gene 301544 ENTREZGENE
PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT UniProtKB/TrEMBL
  PTHR10947 UniProtKB/TrEMBL
Pfam B3_4 UniProtKB/TrEMBL
  PF03484 UniProtKB/TrEMBL
  PhetRS_B1 UniProtKB/TrEMBL
  tRNA_synthFbeta UniProtKB/TrEMBL
PhenoGen Farsb PhenoGen
PROSITE PS51483 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014119 RatGTEx
SMART B3_4 UniProtKB/TrEMBL
  SM00874 UniProtKB/TrEMBL
Superfamily-SCOP PheT/TilS domain UniProtKB/TrEMBL
  Putativ_DNA_bind UniProtKB/TrEMBL
  SSF55681 UniProtKB/TrEMBL
UniProt A0A8I6ASF2_RAT UniProtKB/TrEMBL
  A0A8I6ATG0 ENTREZGENE, UniProtKB/TrEMBL
  F7FM91 ENTREZGENE
  Q68FT7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FM91 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-07 Farsb  phenylalanyl-tRNA synthetase subunit beta  Farsb  phenylalanyl-tRNA synthetase, beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Farsb  phenylalanyl-tRNA synthetase, beta subunit  Farslb  phenylalanine-tRNA synthetase-like, beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Farslb  phenylalanine-tRNA synthetase-like, beta subunit      Symbol and Name status set to approved 1299863 APPROVED
2005-10-07 Farslb        Symbol and Name status set to provisional 70820 PROVISIONAL