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Gene: Usp54 (ubiquitin specific peptidase 54) Rattus norvegicus

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Symbol:

Usp54

Name:

ubiquitin specific peptidase 54

RGD ID:

1303206

Description:

Predicted to enable K63-linked deubiquitinase activity and cysteine-type deubiquitinase activity. Predicted to be involved in protein deubiquitination and proteolysis. Orthologous to human USP54 (ubiquitin specific peptidase 54); INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

inactive ubiquitin carboxyl-terminal hydrolase 54; inactive ubiquitin-specific peptidase 54; ubiquitin carboxyl-terminal hydrolase 54; ubiquitin specific protease 54

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP54 (ubiquitin specific peptidase 54)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usp54 (ubiquitin specific peptidase 54)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NECTIN4 (nectin cell adhesion molecule 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	USP54 (ubiquitin specific peptidase 54)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp54 (ubiquitin specific peptidase 54)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp54a (ubiquitin specific peptidase 54a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	usp54b (ubiquitin specific peptidase 54b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp54b (ubiquitin specific peptidase 54b)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	ec	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	usp54	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp54	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	3,741,311 - 3,806,932 (+)	Ensembl				GRCr8
mRatBN7.2	15	3,659,345 - 3,757,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,711 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	3,702,833 - 3,767,868 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,089,252 - 5,154,287 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,701,644 - 3,766,679 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,091,834 - 4,190,408 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,091,754 - 4,190,408 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	8,193,069 - 8,291,196 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	3,918,087 - 3,983,122 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	836,782 - 901,563 (-)	NCBI		Celera
RGSC_v3.1	15	3,918,086 - 3,948,102 (+)	NCBI
Cytogenetic Map	15	p16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bufotalin (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

CGP 52608 (ISO)

clobetasol (ISO)

coumestrol (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

fluoranthene (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (ISO)

GSK-J4 (ISO)

inulin (ISO)

isoflurane (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

nickel atom (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (EXP)

triphenyl phosphate (EXP,ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein deubiquitination (IEA)

proteolysis (IEA)

Molecular Function

cysteine-type deubiquitinase activity (IEA,ISO,ISS)

cysteine-type peptidase activity (IEA)

hydrolase activity (IEA)

K63-linked deubiquitinase activity (IEA,ISO)

metal ion binding (IEA)

peptidase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	A genomic analysis of rat proteases and protease inhibitors.	Puente XS and Lopez-Otin C, Genome Res 2004 Apr;14(4):609-22.
3.	Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases.	Quesada V, etal., Biochem Biophys Res Commun 2004 Jan 30;314(1):54-62.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:15057822

Genomics

Comparative Map Data

Usp54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	3,741,311 - 3,806,932 (+)	Ensembl				GRCr8
mRatBN7.2	15	3,659,345 - 3,757,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,711 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	3,702,833 - 3,767,868 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	5,089,252 - 5,154,287 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	3,701,644 - 3,766,679 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	4,091,834 - 4,190,408 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	4,091,754 - 4,190,408 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	8,193,069 - 8,291,196 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	3,918,087 - 3,983,122 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	836,782 - 901,563 (-)	NCBI		Celera
RGSC_v3.1	15	3,918,086 - 3,948,102 (+)	NCBI
Cytogenetic Map	15	p16	NCBI

USP54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	73,497,538 - 73,625,981 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	73,497,538 - 73,626,117 (-)	Ensembl			hg38	GRCh38
GRCh37	10	75,257,296 - 75,385,739 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	74,927,302 - 75,005,439 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	74,928,058 - 74,983,104	NCBI
Celera	10	68,542,895 - 68,621,030 (-)	NCBI		Celera
Cytogenetic Map	10	q22.2	NCBI
HuRef	10	69,250,909 - 69,328,906 (-)	NCBI		HuRef
CHM1_1	10	75,539,039 - 75,617,173 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	74,368,953 - 74,497,405 (-)	NCBI		T2T-CHM13v2.0

Usp54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	20,598,980 - 20,694,559 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	20,598,980 - 20,691,131 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	20,548,912 - 20,644,491 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	20,548,912 - 20,641,063 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	21,368,134 - 21,437,576 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	19,337,470 - 19,350,224 (-)	NCBI		MGSCv36	mm8
Celera	14	16,930,378 - 16,999,960 (-)	NCBI		Celera
Cytogenetic Map	14	A3	NCBI
cM Map	14	11.53	NCBI

Usp54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	18,258,024 - 18,321,481 (+)	Ensembl
ChiLan1.0	NW_004955437	18,240,303 - 18,322,197 (+)	NCBI	ChiLan1.0	ChiLan1.0

USP54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	85,673,298 - 85,803,740 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	85,678,621 - 85,812,641 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	70,044,872 - 70,173,486 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	72,503,267 - 72,630,127 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	72,503,267 - 72,596,502 (-)	Ensembl			panPan2	panpan1.1

USP54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	24,029,926 - 24,151,871 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	24,029,918 - 24,129,234 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	24,167,654 - 24,289,617 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	24,310,187 - 24,432,163 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	24,310,195 - 24,389,463 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	24,207,827 - 24,329,405 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	24,408,044 - 24,529,967 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	24,762,959 - 24,884,898 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usp54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	56,939,580 - 57,066,973 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	5,489,787 - 5,558,962 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	5,432,420 - 5,559,698 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	76,307,230 - 76,377,006 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	76,307,223 - 76,439,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	82,432,756 - 82,498,581 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	57,665,388 - 57,780,712 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	57,665,674 - 57,779,632 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	18,242,681 - 18,361,899 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	7,098,591 - 7,169,981 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	7,099,565 - 7,226,067 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usp54
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	90,352,710 - 90,423,991 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usp54
301 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	437
Count of miRNA genes:	224
Interacting mature miRNAs:	258
Transcripts:	ENSRNOT00000029615
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
1300142	Bp191	Blood pressure QTL 191	3.14		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	15	1	15177511	Rat

Markers in Region

RH130110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,757,466 - 3,757,656 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,190,172 - 4,190,361	NCBI	Rnor6.0
Rnor_5.0	15	8,290,960 - 8,291,149	UniSTS	Rnor5.0
RGSC_v3.4	15	3,982,886 - 3,983,075	UniSTS	RGSC3.4
Celera	15	836,829 - 837,018	UniSTS
RH 3.4 Map	15	66.6	UniSTS
Cytogenetic Map	15	p16	UniSTS

BF411196

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,747,571 - 3,747,666 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,180,278 - 4,180,372	NCBI	Rnor6.0
Rnor_5.0	15	8,281,066 - 8,281,160	UniSTS	Rnor5.0
RGSC_v3.4	15	3,972,992 - 3,973,086	UniSTS	RGSC3.4
Celera	15	846,818 - 846,912	UniSTS
RH 3.4 Map	15	65.7	UniSTS
Cytogenetic Map	15	p16	UniSTS

RH138305

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,730,389 - 3,730,538 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,163,097 - 4,163,245	NCBI	Rnor6.0
Rnor_5.0	15	8,263,885 - 8,264,033	UniSTS	Rnor5.0
RGSC_v3.4	15	3,955,811 - 3,955,959	UniSTS	RGSC3.4
Celera	15	863,954 - 864,102	UniSTS
RH 3.4 Map	15	66.2	UniSTS
Cytogenetic Map	15	p16	UniSTS

Ncl

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	3,699,188 - 3,699,761 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	4,131,898 - 4,132,470	NCBI	Rnor6.0
Rnor_5.0	15	8,233,441 - 8,234,013	UniSTS	Rnor5.0
RGSC_v3.4	15	3,924,612 - 3,925,184	UniSTS	RGSC3.4
Celera	15	894,468 - 895,040	UniSTS
Cytogenetic Map	15	p16	UniSTS
Cytogenetic Map	9	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	91	59	6	355	191	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
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	XM_063274529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC091344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
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	BI282345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BN000369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB557281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
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	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029615 ⟹ ENSRNOP00000038767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	3,741,311 - 3,806,932 (+)	Ensembl
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,703 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,125,373 - 4,190,408 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083467 ⟹ ENSRNOP00000068778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	3,741,311 - 3,806,932 (+)	Ensembl
mRatBN7.2 Ensembl	15	3,659,240 - 3,757,703 (+)	Ensembl
Rnor_6.0 Ensembl	15	4,091,754 - 4,190,366 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099921 ⟹ ENSRNOP00000097777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	3,683,291 - 3,757,711 (+)	Ensembl

RefSeq Acc Id:

NM_001008863 ⟹ NP_001008863

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,741,899 - 3,806,935 (+)	NCBI
mRatBN7.2	15	3,692,654 - 3,757,703 (+)	NCBI
Rnor_6.0	15	4,125,373 - 4,190,408 (+)	NCBI
Rnor_5.0	15	8,193,069 - 8,291,196 (+)	NCBI
RGSC_v3.4	15	3,918,087 - 3,983,122 (+)	RGD
Celera	15	836,782 - 901,563 (-)	RGD

Sequence:

show sequence

ATGTCTTGGAAAAGAAATTACTTTTCTGGAGGCCGAGGTAGCGTTCAAGGAATGTTTGCACCTC
GGAGCTCAATGTCTATTGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACAGCTGCTT
CCTCAATAGCGCGCTACAGGTTTTGTGGCACTTGGACATCTTCCGCCGCAGCTTTCGGCAGCTC
ACATCTCACAAGTGCATGGGCGATTCCTGCATCTTCTGTGCGCTCAAGGGCATCTTTAAGCAGT
TCCAGTGCAGTAGTGAAAAAGTGCTTCCTTCTGACACTCTCCGTAGTGCTCTGGCGAAGACTTT
CCAGGATGAACAGCGTTTCCAGCTGGGGATTATGGATGACGCTGCAGAATGCTTTGAAAACCTC
CTGATGAGAATTCACTTCCATATCGCGGACGAAACCAAAGAGGATATATGTACTGCTCCACACT
GCATTTCCCACCAGAAGTTTGCGATGACGTTGTTTGAGCAGTGTGTGTGCACGAGCTGCGGTGC
CACCTCTGACCCACTGCCCTTCATCCAGATGGTGCACTACATCTCCACCACTTCCCTTTGTAAC
CAGGCCATTTGTATGCTGGAAAAGCGGGAGAAACCTTCACCGGGTATGTTTGGTGAGCTGCTTC
AGAATGCCAGCACCATGGGGGACCTGCGGGACTGTCCGAGCAACTGTGGGGAGAGAATTCGGAT
CCGCCGTGTGTTGATGAATGCACCACAGATTATCACGATTGGGCTGGTTTGGGACTCAGACCAT
TCCGACTTGGCAGAGGATGTCATCCACAGTCTGGGCACCTGCCTTAAGTTGGGTGATCTGTTTT
TCAGAGTGACAGATGACCGAGCCAAGCAGTCGGAGCTGTACTTAGTAGGAATGATCTGTTACTA
TGGCAAGCATTATTCTACATTCTTCTTTCAAACCAAGATCCGAAAATGGATGTATTTTGATGAT
GCTCATGTCAAGGAGATTGGTCCGAAGTGGAAGGACGTGGTGACCAAATGCATTAAAGGGCACT
ATCAGCCCTTGCTGCTGCTCTATGCAGATCCCCAGGGTACCCCCGTGTCTGCCCAGGACCTGCC
TCCCCACGCTCAGTTGCTGTCACACACCAAGACATGCTACGACAGTGAAGACTCAGGACACCTG
ACTGACAGTGAATGTAATCAGAAACACACAACGAAGAAAGGGCCCCTGGTGGAGCGCAGGAGAG
GCTCTGGCCGCATTCGGAGGAAAGCTGATGCCCCACAGGCCTCAGGCTATCACAGTGAAGGAGA
AACACTGAAAGAGAAGCAGGCTCCTAGGAATGCCTCCAAATCCAGCAGCACCAGCAGGCTAAAG
GATTTCAAAGAGACAGTCAGCAATATGATCCACAGCAGGCCTTCCTTGGCTTCTCAGACCAATG
CAGCATCTCCCTGTGTAGGCAGGGCAGGAGACCAGCCAGACAAGATACCAGCAAGGAACTTACC
TCTACACTCTCGGGGCTGGGAAACGGAGAGTACCAGCAGTGAGGCAAGATCCAGTTCTTCCAGC
AAATACCGCCCAACATGGAGACCTAAACGAGAATCCCTAAATATTGACAGCATTTTCAGTAAGG
ACAAAAGGAAGCATTGTGGTTACACCCAGCTTAAGACCTTTCCTGAAGATGCAGCTAAAGAATT
TGCACAAGATGAAGTAAGCAATCCAGTTGCTAACGATATTAAAGATGGTGGACCAAGCTCACAG
CATAAACTCTGGGGAACAGCCAGGCCAGGCTCTCATCTTTTAGAACAGCATCCTCGACTAATCC
AGCGGATGGAATCTGGCTATGAGAGCAGCGAGAGGAACAGCAGCAGCCCTGTCAGTTTGGATGC
TGCCCCGCCTGAATGCTTGAATGTCTACAGGGATCAAAGCACAAAGAGAGCTGTTGGGTTTGTT
CCTTCTTGGCGTCATATCCCAAAGTCTCACAGCAGTAGCATCCTGGAAGTGGACTCCACAGCAC
CCGTGACTGGCTGGACAGAGACCCAACCTTTCTCAGATGGGGAGATCACCTCTAAAAGTGAGTT
GGATGAACTTCAGGAAGAAGTGGCCAGGCGGGCCCAGGAACAGGAACTTCGAAAGAAACGGGAG
AAGGAATTAGAGGCTGCTAAAGGCTTTAATCCCCATCCTAGCCGATACATGGACTTGGATGAAC
TACAGAATCAGGGGAGGAGTGACGGCTTTGAAAGGTCCTTGCAAGAGGCAAATTCAGTATTTGA
AGAGTCGCTGCATCTGGAGCAAGAGGGAGACTGTGCTGCCGCTCTGGCTCTCTGTAACGAAGCT
ATCTCTAAACTAAGACTTACCCTGCATGATGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCG
ATAAGAAGTTGCAAATCAGTATTCGAAAAGCTCGAAGCCTGCAAGATCGCATGCAGCAGCAGCC
ACCATCGCAGCAGCCGGTGCAGCCCTCAGCCTCTCTCCCATCACAGGGGGGCGGCCTCCCTCAG
CCGACCAGTGAACAGTCTGTCCCGCTCCAAGTACTGCTAAGCCAGCAGACACAGCTGGAACCCT
GCAAGGATTCAGAGCTCGGCGCCACTTCCCCTTTCTTCCACTCACCTGCTTCCTGCCCTGAGCC
ACACTCATCCCTCGTCTCACCGTCACCTGCTCAGTCTGTCTCTCAGCACAGTCCTCCTGGGACG
TCTGCCTTGAAGCTCCTGAAGTCTTTTGAGGTGGATATCGTCAACCACTCTGCATTTCACAGGC
AGGATTTACCTAAAGCAACAGGTAGAACTGAGATGAATTCTCAACATGAATGCCTGCCCTTTGA
TGCCCTTGAAGATAGGCTCCAAGGTCACAGGGAGGACAACAGCTGTTGTAGCAAATTCCCACCC
CAAGAAGGAAGAGACACAACTCAAGATCAGCTGTTGGAAGGAAGGAAGACTCCTGTTGACATAT
CCATGGGGATGCCTTGGTCACATTCAGCAGGAGGAGCTACTTCTGAGAGAGTTATGCATAGCCT
AAACAGTCCTTCAAGTCCATCAGCTCAGCCTGCTGTTCCCCCCTACGGTGCCTGCCACCCTATA
ATGTCTGCTGCTGCTTCACCTGTGCTTCATGCTGCTGACCCCATGCAGAAACTTAACCAACATC
TCCAAGCCCAAAGTCTCCAAACTTCATTGGCTTCAAAAGTGGTCAGAGGCAGTGAGGAGCCCTA
TAGGCCAGAGTTCCCCAGTACAAAAGGCCTTGTCCGCTCATTGGCAGAGCAGTTCCAGAAGATT
CGGAATACTTCCACGAGAGATGTTATAGGTTCCCAGGATCGAAGTTTGCCAAATGGTCTAAGGA
AGAGCTCTTCTCCTTCTGACTTTATGCTTCCATTATCCCAGGGTCCAGAAAAAGAACACTGTCG
TTGGGTAAACCAGCCCCCTTCTCCAGATGGCAGGGAAAGACAGCCCTGCTGGGAAGAACCTGCA
GGGCATCCTTCTGTTTCCATTGACTCTGGGCTTCCTAATGGTGAAGCCTCGAGGAGAAGACAGC
CCAGACTGGCCGAGGCAGACATATACCAAGGAAAGCTACCCCAAGTGACAGATACTAGGCCCAC
GGAGCTGGGCAGTAGTGTCAGCTTGGGGACTTCTTTGCCTTTGGATTCTTGGGTAAATGTCACA
AGGCTCTGTGATTCTCAAGTTAAACACAGGGCTCCTGGGCTAGGAGTCAAGTCCTCCTCCCATG
ATTCCCGTACATGTGTAACCTATCCAGAAAGAAATCCTATCCTTTTGCATCCACACTGGAACCA
AGACACAGAGCAGGAGACGTCTGAACTGGAGTCTCTCTACCAAGCCAGTCTCCAGGCCTCCTCT
CATACTGGCTATTCTGATTGGAGGTCACAGGATGTGGCCTGGCAGCCACTTAGCCTAACAGGTT
CTGCAGATGGCATGGGGAGGAGACTGCACTCAGCCCCTGGTCTTGATCTTTCAAAGACTCCAAC
AGCAGAAATGGAGCGCATTCTTTATGAACCGAGTACAGTGCCTGTCTCTCAGGATTCATCAAAC
GTGAGGAAAAAGACTTTGGAAACCGGGCACCATTGTTCCAGCTCCTCTTCCCTCCCTGTCATCC
ATGATCCTCCTGTATTTCTCCTTGATCCTAAACTCTACCCTCCCCAACCACAGTTCCTGTCCCC
AGATGTCCTGATGCCCAGCATGGCAGGGGAGCCCTATAGATCCCCAGGAACTTCGAGGAGTGTC
CAACAGTTTCTGGCTATGTGTGACAGGGATGAAACTCCCCAAGGGGTCAAGTACACAGGAAGGA
CTTTGAACTACCGAAGTCTACCTCATCGTTCCAGAACTGATGCTTCCTGGGGACCAGGGACAGA
AACCAACCAGCACATTGGGGCCAGAGTCTTAACTGCGCCAGCATGCAAGCCTCAGCTAACCTAC
ACTGCCACACTACCAGAAAGACACCAGGGCCTTCAGGTTCCTCATGCTCAGTCCTGGGGCAATC
TTTTCCACTTACCCTCCCATCCTTCTGCTGTTCACCCAGGGTCCCCACCATCCAGCAGTCTTCA
TGTACTCCATAGGTCATCTTGGAATTCGGGTTCTGTTCTGGGGTCCCGAACACCTGGTCCTCGA
CGAATAGACGTGCCCCCAGATGATGACGGGAGACAGAGCCAATACCCCTCTCAGTATAGACACA
GGAGTGCAGGGGAGGAGAGAGTTAGGTTTGCTCTGTCAAACACTGCGGGCACAGAGCAGAGCAG
GGTGAGACTGCTACAGCACAGCAGGTGGTAAGAGCTACCCCAACCTGCCCTGGGGCCACACCTC
CTCTAGAACCTGTATGGTGGCACAGTGGTACCTTGAGTCCTGCCAGTTATGCCATTCTTGTCTC
AGCGTCGACTTGGTCATTTCCCGCCAGGCATTGCGCCTGCAATCCCCGAGGTCCGCAGTTGAAG
GTAGAGGCTGCACAGTCGCATTTCCAGGCCAGGAACTCTGGGTAAAAAGAGACCATGGGTCTTT
CTCTTTTTTCCGTTTCTTTCTTTTTAAAAAAAGAACAGAACCACGACAACAAAAAAGATGTTGA
TTTTTTTTCCTAAAGGTGTTTGCTTCTTTGGGATGGAATATTTGAAATTCCAGCTTTAGCGCTG
GGGATGTAGCTCAGTTGGTAGAGGGTTTTCTTAACACGCAAATCACCGGGGTTCTATCCTAGCA
GTGTGTGAAACCGCATGGTGGTGCACACCTGTCACCCTGGCACTTGGGAGGTGGGGGTAGGAGG
ATCAGAGGTTCAGATTCATCCTTGGCTACATAGCAAGTTCTAGGCTTGTCTGGGCTACTTTATT
TCTGGTTTCTTTTAGCCCCCATCTCCATCAGAGCCCTCAACTCCTGGCCCTACTATATTCCCAA
CTTATACTCCTTGTTTATCCACCTGTCCATATTACCTAACTCCCTTCCCCATCTCCTGTCAGTA
GTCAGGATTCTGATCATGTTCTTAAGGGAAGCTCAGCTGCCCAGGTGTGGCCTGTCAGCCTTCC
TCGTGACTCAGACCATAGGCCTGGAGTGGGGAGCTGCCAATAGACTATTTGCCCTTCTGAACAG
GTGGCGTTGGGCACACTAACACTCCCTCCTGTCCTCAGCAGCAGAGCCATTACTGCCACTTGCT
CAGTCACCCTTAAACTCTCAAGAGTCAGCTAAACTATTTTAGGGCAGAGCATACTGTTTTTGTA
AAGTATTTTTCATTAATAAATCTGTAAGATAGTTGTATTTAA

hide sequence

RefSeq Acc Id:

XM_017599770 ⟹ XP_017455259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI
mRatBN7.2	15	3,681,455 - 3,757,703 (+)	NCBI
Rnor_6.0	15	4,114,726 - 4,190,408 (+)	NCBI

Sequence:

show sequence

GGCAGTACCACTCTGAATGTGGGCAGCACCATGCCTTAGGGGTCTGGATTGAGATAAAAGTTTG
CCCATTCTCTGCTCTGCTTCTGGTGACTGACCACTGCAGTGTGACTGTTGTCCATGCTTCTTCA
GCTAAGCCTTTCCTGCTGTGAGCCAAAGTAGTTTTTCTCAATTTGCTTTGTCAGGTATTTTCTT
GTAGAGAAAAGAACAAATGCACTGTAGGCAGCTTTCCGGTTTAGCACTGGTAGTAGAAGTGTGC
GCTTTTGCCGTGCTTCCGTGCCTTGGCACTAGGAATGAGAAGACCTGGTCAGAACGCCAACAGT
GAGCAGGAGAAGCAGGATCTTTTTCTCTTAAACTTGGTACTTGCTGTGCTGCCAAAGGACTACT
TTACTTTAAGCATATTATTAAAATGTAAGCTTAATTAGTTTTGGGCAGTGTCCATAGTTGCTTA
ATTTTACCAATAAACTTTAATTAAATCTTGTTTTAGTGACCTCAAGTATTTTCTCTCAAGGTAT
AGAAATATAGCCAACTTTCATAAATGGCAAGAATTTTGCTGATTGAGTTTTCCTCAGTTGCTTA
ATAAAGCAACTGGTTTCAGTAAAGCTGTTTAATAGCAGAGTGACACATAGAAGCCTGCCTGCTG
GCCCCTGGGCCTCTATGCCCTGCCTGCAGAGGCCAGCTCTGTTTGACTGATGCCATGGTTCGGG
GGGCACCCAGCCGCAGCTCCCTAAAGAGGTGTGAAGATCTTAGCTGGAACAGCCTTTAGATTCA
GGTCGTTTTAAAAGAATTTAAATTCACAGAATTCCCTAATTTCTTTTAGCGTGGCCCATTTTAA
TGTTTAAGACAGAAGACTTTTGCCCATTAAAATGGTTTCACTGCGGATAGTCTTGGGATTTTGA
ACTGATTCAGGCAGCATTGTTTTGGTGATTCTCTAGGGCACTGCAAAGGTGTCTTCTCACAGAC
ACCACATAAAGGGTTCTTTTAGGACCAGCCCTTTGGAAGCAGCTGCCCCCCCTGCAAACCCTGT
GTTTTGATGACCTTGTGTTCGGGAATGCCTTTGGAGAAAGCAGCCTCATAGTTGTTAAAAGCCT
CCAGTGAAGTCTGTCCTGAATGGTTAGTTCCTTCAGTTTAGCTTCTCAATGAATTGCTCTTGGT
AGTTGGCAAAAAAATTGTTTTACCCCTGATATCCTGTTCTGTGCCTTTGTGGTTAGATGAACAG
TTTCCCATTGTTACTCTGTCTCCTCCCTCTGTACCCTTGCCTCTGTTCCACTCCTGTGCCACTT
GCCCCACAAATGCCCTTGTGAGTGCTGAAGTTTTTTGCTGAGCTCGAATGGGTTGTCTGCTCTC
AGGCACAGCTGGCTATTCTGGTCTCAGAAGAAAAGAGAAGAGGCTTTCTGAAGGTCTGGTAGAG
AGGAGAGAAGGAACTTGGAATACAGCTGAAAGGTGGTGTAGCGAAACAGCAGCAGCAGTCCTAC
CGAGAAAGGACCCAGACGACGTCTCCGCTGGTTAGAGCTTGTCTCTAGAAGATGGTGAGCCACG
GCACCAAGGGGATGAGGAGTGCCTTGGGTTCCTGCGCCTTCCTTCAGTCTTCAGTCCTCCAGAA
GCACTATAAAGAGGGCTGAAGAACAAGCTTGCTTGGTCCCGGACGCTGTTGTCTTGAAGATTCC
GTCTGTCCCACCAGGACTTTAGGGAGGCAGTTTCAGCAACAGAGAAGGAAGCAGGACTTAAGGA
CGTCTCTACATTGGTCGTGTGCCTAGTTACATTTTGAACAGTGGGCGGGTGAAGGGCAGCTTTG
GCACCTGGCTCTAAGGAGACACCTGAATTCCCTGAGTTTACAGATGTGATGTTTGAGGACTGCA
AAAGACACAGGTCCCTTGCCAAAAAGATATAAAGCCTCCTTTCCCCCACTTTTGGGCTAATGTG
AACAATAATGTCTTGGAAAAGAAATTACTTTTCTGGAGGCCGAGGTAGCGTTCAAGGAATGTTT
GCACCTCGGAGCTCAATGTCTATTGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACA
GCTGCTTCCTCAATAGCGCGCTACAGGTTTTGTGGCACTTGGACATCTTCCGCCGCAGCTTTCG
GCAGCTCACATCTCACAAGTGCATGGGCGATTCCTGCATCTTCTGTGCGCTCAAGGGCATCTTT
AAGCAGTTCCAGTGCAGTAGTGAAAAAGTGCTTCCTTCTGACACTCTCCGTAGTGCTCTGGCGA
AGACTTTCCAGGATGAACAGCGTTTCCAGCTGGGGATTATGGATGACGCTGCAGAATGCTTTGA
AAACCTCCTGATGAGAATTCACTTCCATATCGCGGACGAAACCAAAGAGGATATATGTACTGCT
CCACACTGCATTTCCCACCAGAAGTTTGCGATGACGTTGTTTGAGCAGTGTGTGTGCACGAGCT
GCGGTGCCACCTCTGACCCACTGCCCTTCATCCAGATGGTGCACTACATCTCCACCACTTCCCT
TTGTAACCAGGCCATTTGTATGCTGGAAAAGCGGGAGAAACCTTCACCGGGTATGTTTGGTGAG
CTGCTTCAGAATGCCAGCACCATGGGGGACCTGCGGGACTGTCCGAGCAACTGTGGGGAGAGAA
TTCGGATCCGCCGTGTGTTGATGAATGCACCACAGATTATCACGATTGGGCTGGTTTGGGACTC
AGACCATTCCGACTTGGCAGAGGATGTCATCCACAGTCTGGGCACCTGCCTTAAGTTGGGTGAT
CTGTTTTTCAGAGTGACAGATGACCGAGCCAAGCAGTCGGAGCTGTACTTAGTAGGAATGATCT
GTTACTATGGCAAGCATTATTCTACATTCTTCTTTCAAACCAAGATCCGAAAATGGATGTATTT
TGATGATGCTCATGTCAAGGAGATTGGTCCGAAGTGGAAGGACGTGGTGACCAAATGCATTAAA
GGGCACTATCAGCCCTTGCTGCTGCTCTATGCAGATCCCCAGGGTACCCCCGTGTCTGCCCAGG
ACCTGCCTCCCCACGCTCAGTTGCTGTCACACACCAAGACATGCTACGACAGTGAAGACTCAGG
GAGGGAGCCTTCCATCTCAAGTGATACTCGAACAGATTCCTCAACGGAGAGCTATCCCTACAAA
CAGTCTCACCATGAGTCTGTGGTCAGTCACTTCTCTTCCGATTCTCAGGGGACAGTCATCTATA
ATGTGGAGAATGATTCCATGTCTCAGAGCAGTCGGGACACAGGACACCTGACTGACAGTGAATG
TAATCAGAAACACACAACGAAGAAAGGGCCCCTGGTGGAGCGCAGGAGAGGCTCTGGCCGCATT
CGGAGGAAAGCTGATGCCCCACAGGCCTCAGGCTATCACAGTGAAGGAGAAACACTGAAAGAGA
AGCAGGCTCCTAGGAATGCCTCCAAATCCAGCAGCACCAGCAGGCTAAAGGATTTCAAAGAGAC
AGTCAGCAATATGATCCACAGCAGGCCTTCCTTGGCTTCTCAGACCAATGCAGCATCTCCCTGT
GTAGGCAGGGCAGGAGACCAGCCAGACAAGATACCAGCAAGGAACTTACCTCTACACTCTCGGG
GCTGGGAAACGGAGAGTACCAGCAGTGAGGCAAGATCCAGTTCTTCCAGCAAATACCGCCCAAC
ATGGAGACCTAAACGAGAATCCCTAAATATTGACAGCATTTTCAGTAAGGACAAAAGGAAGCAT
TGTGGTTACACCCAGCTTAAGACCTTTCCTGAAGATGCAGCTAAAGAATTTGCACAAGATGAAG
TAAGCAATCCAGTTGCTAACGATATTAAAGATGGTGGACCAAGCTCACAGCATAAACTCTGGGG
AACAGCCAGGCCAGGCTCTCATCTTTTAGAACAGCATCCTCGACTAATCCAGCGGATGGAATCT
GGCTATGAGAGCAGCGAGAGGAACAGCAGCAGCCCTGTCAGTTTGGATGCTGCCCCGCCTGAAT
GCTTGAATGTCTACAGGGATCAAAGCACAAAGAGAGCTGTTGGGTTTGTTCCTTCTTGGCGTCA
TATCCCAAAGTCTCACAGCAGTAGCATCCTGGAAGTGGACTCCACAGCACCCGTGACTGGCTGG
ACAGAGACCCAACCTTTCTCAGATGGGGAGATCACCTCTAAAAGTGAGTTGGATGAACTTCAGG
AAGAAGTGGCCAGGCGGGCCCAGGAACAGGAACTTCGAAAGAAACGGGAGAAGGAATTAGAGGC
TGCTAAAGGCTTTAATCCCCATCCTAGCCGATACATGGACTTGGATGAACTACAGAATCAGGGG
AGGAGTGACGGCTTTGAAAGGTCCTTGCAAGAGGCAAATTCAGTATTTGAAGAGTCGCTGCATC
TGGAGCAAGAGGGAGACTGTGCTGCCGCTCTGGCTCTCTGTAACGAAGCTATCTCTAAACTAAG
ACTTACCCTGCATGATGCCAGCTCTAGCACGCACAGCAGAGCCCTAGTCGATAAGAAGTTGCAA
ATCAGTATTCGAAAAGCTCGAAGCCTGCAAGATCGCATGCAGCAGCAGCCACCATCGCAGCAGC
CGGTGCAGCCCTCAGCCTCTCTCCCATCACAGGGGGGCGGCCTCCCTCAGCCGACCAGTGAACA
GTCTGTCCCGCTCCAAGTACTGCTAAGCCAGCAGACACAGCTGGAACCCTGCAAGGATTCAGAG
CTCGGCGCCACTTCCCCTTTCTTCCACTCACCTGCTTCCTGCCCTGAGCCACACTCATCCCTCG
TCTCACCGTCACCTGCTCAGTCTGTCTCTCAGCACAGTCCTCCTGGGACGTCTGCCTTGAAGCT
CCTGAAGTCTTTTGAGGTGGATATCGTCAACCACTCTGCATTTCACAGGCAGGATTTACCTAAA
GCAACAGGTAGAACTGAGATGAATTCTCAACATGAATGCCTGCCCTTTGATGCCCTTGAAGATA
GGCTCCAAGGTCACAGGGAGGACAACAGCTGTTGTAGCAAATTCCCACCCCAAGAAGGAAGAGA
CACAACTCAAGATCAGCTGTTGGAAGGAAGGAAGACTCCTGTTGACATATCCATGGGGATGCCT
TGGTCACATTCAGCAGGAGGAGCTACTTCTGAGAGAGTTATGCATAGCCTAAACAGTCCTTCAA
GTCCATCAGCTCAGCCTGCTGTTCCCCCCTACGGTGCCTGCCACCCTATAATGTCTGCTGCTGC
TTCACCTGTGCTTCATGCTGCTGACCCCATGCAGAAACTTAACCAACATCTCCAAGCCCAAAGT
CTCCAAACTTCATTGGCTTCAAAAGTGGTCAGAGGCAGTGAGGAGCCCTATAGGCCAGAGTTCC
CCAGTACAAAAGGCCTTGTCCGCTCATTGGCAGAGCAGTTCCAGAAGATTCGGAATACTTCCAC
GAGAGATGTTATAGGTTCCCAGGATCGAAGTTTGCCAAATGGTCTAAGGAAGAGCTCTTCTCCT
TCTGACTTTATGCTTCCATTATCCCAGGGTCCAGAAAAAGAACACTGTCGTTGGGTAAACCAGC
CCCCTTCTCCAGATGGCAGGGAAAGACAGCCCTGCTGGGAAGAACCTGCAGGGCATCCTTCTGT
TTCCATTGACTCTGGGCTTCCTAATGGTGAAGCCTCGAGGAGAAGACAGCCCAGACTGGCCGAG
GCAGACATATACCAAGGAAAGCTACCCCAAGTGACAGATACTAGGCCCACGGAGCTGGGCAGTA
GTGTCAGCTTGGGGACTTCTTTGCCTTTGGATTCTTGGGTAAATGTCACAAGGCTCTGTGATTC
TCAAGTTAAACACAGGGCTCCTGGGCTAGGAGTCAAGTCCTCCTCCCATGATTCCCGTACATGT
GTAACCTATCCAGAAAGAAATCCTATCCTTTTGCATCCACACTGGAACCAAGACACAGAGCAGG
AGACGTCTGAACTGGAGTCTCTCTACCAAGCCAGTCTCCAGGCCTCCTCTCATACTGGCTATTC
TGATTGGAGGTCACAGGATGTGGCCTGGCAGCCACTTAGCCTAACAGGTTCTGCAGATGGCATG
GGGAGGAGACTGCACTCAGCCCCTGGTCTTGATCTTTCAAAGACTCCAACAGCAGAAATGGAGC
GCATTCTTTATGAACCGAGTACAGTGCCTGTCTCTCAGGATTCATCAAACGTGAGGAAAAAGAC
TTTGGAAACCGGGCACCATTGTTCCAGCTCCTCTTCCCTCCCTGTCATCCATGATCCTCCTGTA
TTTCTCCTTGATCCTAAACTCTACCCTCCCCAACCACAGTTCCTGTCCCCAGATGTCCTGATGC
CCAGCATGGCAGGGGAGCCCTATAGATCCCCAGGAACTTCGAGGAGTGTCCAACAGTTTCTGGC
TATGTGTGACAGGGATGAAACTCCCCAAGGGGTCAAGTACACAGGAAGGACTTTGAACTACCGA
AGTCTACCTCATCGTTCCAGAACTGATGCTTCCTGGGGACCAGGGACAGAAACCAACCAGCACA
TTGGGGCCAGAGTCTTAACTGCGCCAGCATGCAAGCCTCAGCTAACCTACACTGCCACACTACC
AGAAAGACACCAGGGCCTTCAGGTTCCTCATGCTCAGTCCTGGGGCAATCTTTTCCACTTACCC
TCCCATCCTTCTGCTGTTCACCCAGGGTCCCCACCATCCAGCAGTCTTCATGTACTCCATAGGT
CATCTTGGAATTCGGGTTCTGTTCTGGGGTCCCGAACACCTGGTCCTCGACGAATAGACGTGCC
CCCAGATGATGACGGGAGACAGAGCCAATACCCCTCTCAGTATAGACACAGGAGTGCAGGGGAG
GAGAGAGTTAGGTTTGCTCTGTCAAACACTGCGGGCACAGAGCAGAGCAGGGTGAGACTGCTAC
AGCACAGCAGGTGGTAAGAGCTACCCCAACCTGCCCTGGGGCCACACCTCCTCTAGAACCTGTA
TGGTGGCACAGTGGTACCTTGAGTCCTGCCAGTTATGCCATTCTTGTCTCAGCGTCGACTTGGT
CATTTCCCGCCAGGCATTGCGCCTGCAATCCCCGAGGTCCGCAGTTGAAGGTAGAGGCTGCACA
GTCGCATTTCCAGGCCAGGAACTCTGGGTAAAAAGAGACCATGGGTCTTTCTCTTTTTTCCGTT
TCTTTCTTTTTAAAAAAAGAACAGAACCACGACAACAAAAAAGATGTTGATTTTTTTTCCTAAA
GGTGTTTGCTTCTTTGGGATGGAATATTTGAAATTCCAGCTTTAGCGCTGGGGATGTAGCTCAG
TTGGTAGAGGGTTTTCTTAACACGCAAATCACCGGGGTTCTATCCTAGCAGTGTGTGAAACCGC
ATGGTGGTGCACACCTGTCACCCTGGCACTTGGGAGGTGGGGGTAGGAGGATCAGAGGTTCAGA
TTCATCCTTGGCTACATAGCAAGTTCTAGGCTTGTCTGGGCTACTTTATTTCTGGTTTCTTTTA
GCCCCCATCTCCATCAGAGCCCTCAACTCCTGGCCCTACTATATTCCCAACTTATACTCCTTGT
TTATCCACCTGTCCATATTACCTAACTCCCTTCCCCATCTCCTGTCAGTAGTCAGGATTCTGAT
CATGTTCTTAAGGGAAGCTCAGCTGCCCAGGTGTGGCCTGTCAGCCTTCCTCGTGACTCAGACC
ATAGGCCTGGAGTGGGGAGCTGCCAATAGACTATTTGCCCTTCTGAACAGGTGGCGTTGGGCAC
ACTAACACTCCCTCCTGTCCTCAGCAGCAGAGCCATTACTGCCACTTGCTCAGTCACCCTTAAA
CTCTCAAGAGTCAGCTAAACTATTTTAGGGCAGAGCATACTGTTTTTGTAAAGTATTTTTCATT
AATAAATCTGTAAGATAGTTGTATTTAA

hide sequence

RefSeq Acc Id:

XM_039093573 ⟹ XP_038949501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI
mRatBN7.2	15	3,681,458 - 3,757,703 (+)	NCBI

RefSeq Acc Id:

XM_039093576 ⟹ XP_038949504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,794,065 (+)	NCBI
mRatBN7.2	15	3,681,452 - 3,744,842 (+)	NCBI

RefSeq Acc Id:

XM_039093577 ⟹ XP_038949505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,798,587 (+)	NCBI
mRatBN7.2	15	3,681,453 - 3,745,304 (+)	NCBI

RefSeq Acc Id:

XM_063274515 ⟹ XP_063130585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274516 ⟹ XP_063130586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274517 ⟹ XP_063130587

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,715,449 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274518 ⟹ XP_063130588

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274519 ⟹ XP_063130589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,715,484 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274521 ⟹ XP_063130591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,715,484 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274522 ⟹ XP_063130592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274523 ⟹ XP_063130593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,709,377 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274524 ⟹ XP_063130594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274525 ⟹ XP_063130595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,401 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274527 ⟹ XP_063130597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274528 ⟹ XP_063130598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,709,377 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274529 ⟹ XP_063130599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,736,221 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274530 ⟹ XP_063130600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,720,411 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274531 ⟹ XP_063130601

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,735,480 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274532 ⟹ XP_063130602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274533 ⟹ XP_063130603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274534 ⟹ XP_063130604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274535 ⟹ XP_063130605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274536 ⟹ XP_063130606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274537 ⟹ XP_063130607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,708,963 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274538 ⟹ XP_063130608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,706,013 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274539 ⟹ XP_063130609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274540 ⟹ XP_063130610

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,728,938 - 3,806,935 (+)	NCBI

RefSeq Acc Id:

XM_063274541 ⟹ XP_063130611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	3,778,583 - 3,806,935 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001008863	(Get FASTA)	NCBI Sequence Viewer
	XP_017455259	(Get FASTA)	NCBI Sequence Viewer
	XP_038949501	(Get FASTA)	NCBI Sequence Viewer
	XP_038949504	(Get FASTA)	NCBI Sequence Viewer
	XP_038949505	(Get FASTA)	NCBI Sequence Viewer
	XP_063130585	(Get FASTA)	NCBI Sequence Viewer
	XP_063130586	(Get FASTA)	NCBI Sequence Viewer
	XP_063130587	(Get FASTA)	NCBI Sequence Viewer
	XP_063130588	(Get FASTA)	NCBI Sequence Viewer
	XP_063130589	(Get FASTA)	NCBI Sequence Viewer
	XP_063130591	(Get FASTA)	NCBI Sequence Viewer
	XP_063130592	(Get FASTA)	NCBI Sequence Viewer
	XP_063130593	(Get FASTA)	NCBI Sequence Viewer
	XP_063130594	(Get FASTA)	NCBI Sequence Viewer
	XP_063130595	(Get FASTA)	NCBI Sequence Viewer
	XP_063130597	(Get FASTA)	NCBI Sequence Viewer
	XP_063130598	(Get FASTA)	NCBI Sequence Viewer
	XP_063130599	(Get FASTA)	NCBI Sequence Viewer
	XP_063130600	(Get FASTA)	NCBI Sequence Viewer
	XP_063130601	(Get FASTA)	NCBI Sequence Viewer
	XP_063130602	(Get FASTA)	NCBI Sequence Viewer
	XP_063130603	(Get FASTA)	NCBI Sequence Viewer
	XP_063130604	(Get FASTA)	NCBI Sequence Viewer
	XP_063130605	(Get FASTA)	NCBI Sequence Viewer
	XP_063130606	(Get FASTA)	NCBI Sequence Viewer
	XP_063130607	(Get FASTA)	NCBI Sequence Viewer
	XP_063130608	(Get FASTA)	NCBI Sequence Viewer
	XP_063130609	(Get FASTA)	NCBI Sequence Viewer
	XP_063130610	(Get FASTA)	NCBI Sequence Viewer
	XP_063130611	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH97982	(Get FASTA)	NCBI Sequence Viewer
	CAE51895	(Get FASTA)	NCBI Sequence Viewer
	EDL86235	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038767
	ENSRNOP00000038767.4
	ENSRNOP00000068778
	ENSRNOP00000097777.1
GenBank Protein	Q6IE24	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001008863 ⟸ NM_001008863

- UniProtKB:

Q4QQU8 (UniProtKB/Swiss-Prot), Q6IE24 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSWKRNYFSGGRGSVQGMFAPRSSMSIAPSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQL
TSHKCMGDSCIFCALKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENL
LMRIHFHIADETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCN
QAICMLEKREKPSPGMFGELLQNASTMGDLRDCPSNCGERIRIRRVLMNAPQIITIGLVWDSDH
SDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDD
AHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSAQDLPPHAQLLSHTKTCYDSEDSGHL
TDSECNQKHTTKKGPLVERRRGSGRIRRKADAPQASGYHSEGETLKEKQAPRNASKSSSTSRLK
DFKETVSNMIHSRPSLASQTNAASPCVGRAGDQPDKIPARNLPLHSRGWETESTSSEARSSSSS
KYRPTWRPKRESLNIDSIFSKDKRKHCGYTQLKTFPEDAAKEFAQDEVSNPVANDIKDGGPSSQ
HKLWGTARPGSHLLEQHPRLIQRMESGYESSERNSSSPVSLDAAPPECLNVYRDQSTKRAVGFV
PSWRHIPKSHSSSILEVDSTAPVTGWTETQPFSDGEITSKSELDELQEEVARRAQEQELRKKRE
KELEAAKGFNPHPSRYMDLDELQNQGRSDGFERSLQEANSVFEESLHLEQEGDCAAALALCNEA
ISKLRLTLHDASSSTHSRALVDKKLQISIRKARSLQDRMQQQPPSQQPVQPSASLPSQGGGLPQ
PTSEQSVPLQVLLSQQTQLEPCKDSELGATSPFFHSPASCPEPHSSLVSPSPAQSVSQHSPPGT
SALKLLKSFEVDIVNHSAFHRQDLPKATGRTEMNSQHECLPFDALEDRLQGHREDNSCCSKFPP
QEGRDTTQDQLLEGRKTPVDISMGMPWSHSAGGATSERVMHSLNSPSSPSAQPAVPPYGACHPI
MSAAASPVLHAADPMQKLNQHLQAQSLQTSLASKVVRGSEEPYRPEFPSTKGLVRSLAEQFQKI
RNTSTRDVIGSQDRSLPNGLRKSSSPSDFMLPLSQGPEKEHCRWVNQPPSPDGRERQPCWEEPA
GHPSVSIDSGLPNGEASRRRQPRLAEADIYQGKLPQVTDTRPTELGSSVSLGTSLPLDSWVNVT
RLCDSQVKHRAPGLGVKSSSHDSRTCVTYPERNPILLHPHWNQDTEQETSELESLYQASLQASS
HTGYSDWRSQDVAWQPLSLTGSADGMGRRLHSAPGLDLSKTPTAEMERILYEPSTVPVSQDSSN
VRKKTLETGHHCSSSSSLPVIHDPPVFLLDPKLYPPQPQFLSPDVLMPSMAGEPYRSPGTSRSV
QQFLAMCDRDETPQGVKYTGRTLNYRSLPHRSRTDASWGPGTETNQHIGARVLTAPACKPQLTY
TATLPERHQGLQVPHAQSWGNLFHLPSHPSAVHPGSPPSSSLHVLHRSSWNSGSVLGSRTPGPR
RIDVPPDDDGRQSQYPSQYRHRSAGEERVRFALSNTAGTEQSRVRLLQHSRW

hide sequence

RefSeq Acc Id:	XP_017455259 ⟸ XM_017599770
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWKRNYFSGGRGSVQGMFAPRSSMSIAPSKGLSNEPGQNSCFLNSALQVLWHLDIFRRSFRQL TSHKCMGDSCIFCALKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENL LMRIHFHIADETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCN QAICMLEKREKPSPGMFGELLQNASTMGDLRDCPSNCGERIRIRRVLMNAPQIITIGLVWDSDH SDLAEDVIHSLGTCLKLGDLFFRVTDDRAKQSELYLVGMICYYGKHYSTFFFQTKIRKWMYFDD AHVKEIGPKWKDVVTKCIKGHYQPLLLLYADPQGTPVSAQDLPPHAQLLSHTKTCYDSEDSGRE PSISSDTRTDSSTESYPYKQSHHESVVSHFSSDSQGTVIYNVENDSMSQSSRDTGHLTDSECNQ KHTTKKGPLVERRRGSGRIRRKADAPQASGYHSEGETLKEKQAPRNASKSSSTSRLKDFKETVS NMIHSRPSLASQTNAASPCVGRAGDQPDKIPARNLPLHSRGWETESTSSEARSSSSSKYRPTWR PKRESLNIDSIFSKDKRKHCGYTQLKTFPEDAAKEFAQDEVSNPVANDIKDGGPSSQHKLWGTA RPGSHLLEQHPRLIQRMESGYESSERNSSSPVSLDAAPPECLNVYRDQSTKRAVGFVPSWRHIP KSHSSSILEVDSTAPVTGWTETQPFSDGEITSKSELDELQEEVARRAQEQELRKKREKELEAAK GFNPHPSRYMDLDELQNQGRSDGFERSLQEANSVFEESLHLEQEGDCAAALALCNEAISKLRLT LHDASSSTHSRALVDKKLQISIRKARSLQDRMQQQPPSQQPVQPSASLPSQGGGLPQPTSEQSV PLQVLLSQQTQLEPCKDSELGATSPFFHSPASCPEPHSSLVSPSPAQSVSQHSPPGTSALKLLK SFEVDIVNHSAFHRQDLPKATGRTEMNSQHECLPFDALEDRLQGHREDNSCCSKFPPQEGRDTT QDQLLEGRKTPVDISMGMPWSHSAGGATSERVMHSLNSPSSPSAQPAVPPYGACHPIMSAAASP VLHAADPMQKLNQHLQAQSLQTSLASKVVRGSEEPYRPEFPSTKGLVRSLAEQFQKIRNTSTRD VIGSQDRSLPNGLRKSSSPSDFMLPLSQGPEKEHCRWVNQPPSPDGRERQPCWEEPAGHPSVSI DSGLPNGEASRRRQPRLAEADIYQGKLPQVTDTRPTELGSSVSLGTSLPLDSWVNVTRLCDSQV KHRAPGLGVKSSSHDSRTCVTYPERNPILLHPHWNQDTEQETSELESLYQASLQASSHTGYSDW RSQDVAWQPLSLTGSADGMGRRLHSAPGLDLSKTPTAEMERILYEPSTVPVSQDSSNVRKKTLE TGHHCSSSSSLPVIHDPPVFLLDPKLYPPQPQFLSPDVLMPSMAGEPYRSPGTSRSVQQFLAMC DRDETPQGVKYTGRTLNYRSLPHRSRTDASWGPGTETNQHIGARVLTAPACKPQLTYTATLPER HQGLQVPHAQSWGNLFHLPSHPSAVHPGSPPSSSLHVLHRSSWNSGSVLGSRTPGPRRIDVPPD DDGRQSQYPSQYRHRSAGEERVRFALSNTAGTEQSRVRLLQHSRW hide sequence

Ensembl Acc Id:

ENSRNOP00000068778 ⟸ ENSRNOT00000083467

Ensembl Acc Id:

ENSRNOP00000038767 ⟸ ENSRNOT00000029615

RefSeq Acc Id:	XP_038949504 ⟸ XM_039093576
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038949505 ⟸ XM_039093577
- Peptide Label:	isoform X10
- UniProtKB:	A6KKP1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949501 ⟸ XM_039093573
- Peptide Label:	isoform X4
- UniProtKB:	Q6IE24 (UniProtKB/Swiss-Prot), Q4QQU8 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000097777 ⟸ ENSRNOT00000099921

RefSeq Acc Id:	XP_063130588 ⟸ XM_063274518
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130605 ⟸ XM_063274535
- Peptide Label:	isoform X4
- UniProtKB:	Q6IE24 (UniProtKB/Swiss-Prot), Q4QQU8 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063130585 ⟸ XM_063274515
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130604 ⟸ XM_063274534
- Peptide Label:	isoform X4
- UniProtKB:	Q6IE24 (UniProtKB/Swiss-Prot), Q4QQU8 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063130586 ⟸ XM_063274516
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130606 ⟸ XM_063274536
- Peptide Label:	isoform X4
- UniProtKB:	Q6IE24 (UniProtKB/Swiss-Prot), Q4QQU8 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063130608 ⟸ XM_063274538
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063130595 ⟸ XM_063274525
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130594 ⟸ XM_063274524
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130592 ⟸ XM_063274522
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130597 ⟸ XM_063274527
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130607 ⟸ XM_063274537
- Peptide Label:	isoform X4
- UniProtKB:	Q6IE24 (UniProtKB/Swiss-Prot), Q4QQU8 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063130593 ⟸ XM_063274523
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130598 ⟸ XM_063274528
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130587 ⟸ XM_063274517
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130589 ⟸ XM_063274519
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130591 ⟸ XM_063274521
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130600 ⟸ XM_063274530
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130609 ⟸ XM_063274539
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063130610 ⟸ XM_063274540
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063130603 ⟸ XM_063274533
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063130602 ⟸ XM_063274532
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063130601 ⟸ XM_063274531
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130599 ⟸ XM_063274529
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JTN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130611 ⟸ XM_063274541
- Peptide Label:	isoform X8
- UniProtKB:	A6KKN9 (UniProtKB/TrEMBL)

Protein Domains

USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6IE24-F1-model_v2	AlphaFold	Q6IE24	1-1588	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303206	AgrOrtholog
BioCyc Gene	G2FUF-14549	BioCyc
Ensembl Genes	ENSRNOG00000027012	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000029615	ENTREZGENE
	ENSRNOT00000029615.5	UniProtKB/Swiss-Prot
	ENSRNOT00000083467	ENTREZGENE
	ENSRNOT00000099921.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Cysteine proteinases	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7443440	IMAGE-MGC_LOAD
InterPro	Inactive_ubiquitin_hydrolase	UniProtKB/Swiss-Prot
	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Peptidase_C19_UCH	UniProtKB/Swiss-Prot
	USP_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:408223	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116116	IMAGE-MGC_LOAD
NCBI Gene	408223	ENTREZGENE
PANTHER	PTHR22975:SF5	UniProtKB/Swiss-Prot
	UBIQUITIN SPECIFIC PROTEINASE	UniProtKB/Swiss-Prot
Pfam	UCH	UniProtKB/Swiss-Prot
PhenoGen	Usp54	PhenoGen
PROSITE	USP_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000027012	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot
UniProt	A0A0G2JTN3	ENTREZGENE, UniProtKB/TrEMBL
	A6KKN9	ENTREZGENE, UniProtKB/TrEMBL
	A6KKP1	ENTREZGENE, UniProtKB/TrEMBL
	Q4QQU8	ENTREZGENE
	Q6IE24	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q4QQU8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Usp54	ubiquitin specific peptidase 54	Usp54	ubiquitin specific protease 54	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-14	Usp54	ubiquitin specific protease 54			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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