Snupn (snurportin 1) - Rat Genome Database

Name: Snupn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Snupn (snurportin 1) Rattus norvegicus

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Symbol:

Snupn

Name:

snurportin 1

RGD ID:

1303191

Description:

Predicted to enable RNA cap binding activity. Predicted to be involved in RNA import into nucleus. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be part of NLS-dependent protein nuclear import complex. Orthologous to human SNUPN (snurportin 1); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC95000; RNA U transporter 1; RNA, U transporter 1; Rnut1; snurportin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNUPN (snurportin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Snupn (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snupn (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNUPN (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNUPN (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snupn (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNUPN (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNUPN (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snupn (snurportin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SNUPN (snurportin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Snupn (snurportin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	snupn (snurportin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F23F1.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Snup	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	snupn	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	66,242,940 - 66,286,651 (+)	NCBI		GRCr8
mRatBN7.2	8	57,347,412 - 57,388,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	57,348,130 - 57,380,912 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	62,871,545 - 62,904,309 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	61,150,388 - 61,183,151 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	59,014,829 - 59,047,594 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	61,614,798 - 61,654,809 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,615,650 - 61,648,390 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	60,184,262 - 60,224,290 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	60,694,018 - 60,726,694 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	60,713,071 - 60,745,743 (+)	NCBI
Celera	8	56,816,464 - 56,849,116 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 29 (ISO)

Bloom syndrome (ISO)

chromosome 15q24 deletion syndrome (ISO)

colorectal cancer (ISO)

epilepsy (ISO)

PAPA syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

all-trans-retinoic acid (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

ciguatoxin CTX1B (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

folic acid (ISO)

gentamycin (EXP)

inulin (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

thioacetamide (EXP)

thiram (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoskeleton organization (ISO,ISS)

protein complex oligomerization (ISO,ISS)

protein import into nucleus (IEA)

protein tetramerization (ISO,ISS)

RNA import into nucleus (ISO,ISS)

snRNA import into nucleus (IEA)

Cellular Component

cytosol (IEA,ISO)

NLS-dependent protein nuclear import complex (ISO)

nuclear cap binding complex (TAS)

nuclear pore (TAS)

nucleoplasm (ISO)

nucleus (ISO,ISS)

plasma membrane (IEA,ISO)

Molecular Function

nuclear import signal receptor activity (IEA)

protein binding (ISO)

RNA cap binding (TAS)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA transport pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	CRM1-mediated recycling of snurportin 1 to the cytoplasm.	Paraskeva E, etal., J Cell Biol 1999 Apr 19;145(2):255-64.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:23376485

Genomics

Comparative Map Data

Snupn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	66,242,940 - 66,286,651 (+)	NCBI		GRCr8
mRatBN7.2	8	57,347,412 - 57,388,345 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	57,348,130 - 57,380,912 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	62,871,545 - 62,904,309 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	61,150,388 - 61,183,151 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	59,014,829 - 59,047,594 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	61,614,798 - 61,654,809 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,615,650 - 61,648,390 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	60,184,262 - 60,224,290 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	60,694,018 - 60,726,694 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	60,713,071 - 60,745,743 (+)	NCBI
Celera	8	56,816,464 - 56,849,116 (+)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

SNUPN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	75,598,086 - 75,626,461 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	75,598,083 - 75,626,469 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	75,890,427 - 75,918,802 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	73,677,479 - 73,705,774 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	73,677,479 - 73,705,132	NCBI
Celera	15	52,816,555 - 52,843,715 (-)	NCBI		Celera
Cytogenetic Map	15	q24.2	NCBI
HuRef	15	52,648,179 - 52,675,001 (-)	NCBI		HuRef
CHM1_1	15	76,009,938 - 76,038,212 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	73,468,790 - 73,497,167 (-)	NCBI		T2T-CHM13v2.0

Snupn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	56,855,158 - 56,893,545 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	56,858,162 - 56,890,490 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	56,949,419 - 56,986,261 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	56,950,878 - 56,983,206 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	56,798,731 - 56,831,006 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	56,749,061 - 56,781,336 (+)	NCBI		MGSCv36	mm8
Celera	9	54,176,012 - 54,208,260 (+)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	30.57	NCBI

Snupn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	2,691,617 - 2,722,150 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	2,701,496 - 2,720,971 (+)	NCBI	ChiLan1.0	ChiLan1.0

SNUPN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	64,793,879 - 64,821,585 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	68,957,744 - 68,985,777 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	54,508,586 - 54,536,301 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	74,102,744 - 74,151,065 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	74,102,753 - 74,126,511 (-)	Ensembl	panpan1.1		panPan2

SNUPN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,401,016 - 38,422,885 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,401,192 - 38,432,686 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,331,424 - 38,354,995 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	38,606,443 - 38,630,072 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	38,606,449 - 38,629,967 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	38,558,080 - 38,581,589 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	38,602,795 - 38,626,664 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	38,840,276 - 38,863,881 (-)	NCBI		UU_Cfam_GSD_1.0

Snupn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	116,525,429 - 116,545,094 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	34,373,468 - 34,393,692 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	34,373,492 - 34,393,666 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNUPN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	58,038,995 - 58,071,243 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	58,038,917 - 58,065,972 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	62,728,090 - 62,755,132 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNUPN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	7,806,698 - 7,835,477 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	133,860,368 - 133,889,349 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snupn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624894	490,892 - 506,295 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624894	487,110 - 529,775 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Snupn
180 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	42
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000007261
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	50095249	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	50095249	82460899	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	50095249	82460899	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat

Markers in Region

RH137998

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	57,380,657 - 57,380,834 (+)	MAPPER	mRatBN7.2
mRatBN7.2	6	30,044,462 - 30,044,637 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	32,357,725 - 32,357,899	NCBI	Rnor6.0
Rnor_6.0	8	61,648,144 - 61,648,320	NCBI	Rnor6.0
Rnor_5.0	8	60,217,623 - 60,217,799	UniSTS	Rnor5.0
Rnor_5.0	6	42,143,993 - 42,144,167	UniSTS	Rnor5.0
RGSC_v3.4	6	30,695,018 - 30,695,192	UniSTS	RGSC3.4
RGSC_v3.4	8	60,726,440 - 60,726,616	UniSTS	RGSC3.4
Celera	8	56,848,862 - 56,849,038	UniSTS
Celera	6	29,501,854 - 29,502,028	UniSTS
Cytogenetic Map	6	q14	UniSTS
Cytogenetic Map	8	q24	UniSTS

UniSTS:236761

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	57,380,386 - 57,380,614 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	61,647,873 - 61,648,100	NCBI	Rnor6.0
Rnor_5.0	8	60,217,352 - 60,217,579	UniSTS	Rnor5.0
RGSC_v3.4	8	60,726,169 - 60,726,396	UniSTS	RGSC3.4
Celera	8	56,848,591 - 56,848,818	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007261 ⟹ ENSRNOP00000007261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,348,130 - 57,380,912 (+)	Ensembl
Rnor_6.0 Ensembl	8	61,615,650 - 61,648,390 (+)	Ensembl

RefSeq Acc Id:

NM_001004270 ⟹ NP_001004270

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,127 - 66,276,876 (+)	NCBI
mRatBN7.2	8	57,348,158 - 57,380,912 (+)	NCBI
Rnor_6.0	8	61,615,650 - 61,648,398 (+)	NCBI
Rnor_5.0	8	60,184,262 - 60,224,290 (+)	NCBI
RGSC_v3.4	8	60,694,018 - 60,726,694 (+)	RGD
Celera	8	56,816,464 - 56,849,116 (+)	RGD

Sequence:

show sequence

GGCACCTTGGTGTGGGAAGATGGAAGAACTGAGCCAAGCCCTAGCTAGTAGCTTTTCTGTGTCT
CAAGAACTGAACAGCACAGCTGCCCCACACCCTCGCCTGTCTCAATACAAGTCCAAGTATAGCT
CCTTGGAGCAGAGTGAGCGGCGGCGCCAGTTGCTAGAGCTGCAGAAATCCAAGCGGTTGGACTA
TGTGAACCATGCCAGAAGACTGGCTGAAGATGACTGGACAGGGATGGAGAGTGGGGAAGAGGAG
AAGAAGAAAGATGAGGAGGAAATGGATTTGGACCCTGTCAAGAAGTTACCAAAACGCTATGCTA
ATCAATTGATGCTTTCTGAGTGGTTAATTGACGTCCCTTCAGATTTGGGGCAGGAATGGATTGT
GGTTGTGTGCCCTGTTGGGAAAAGAGCCCTTATCGTGGCCTCCAGGGGCTCAACCAGTGCCTAC
ACTAAGAGTGGCTACTGCGTCAATAGGTTTTCTTCCCTTCTTCCAGGAGGCAATAGGAGAAACT
CAACAACAGCCAAAGACTACACCATTCTGGACTGCATTTACAGTGAAGTGAACCAGACATACTA
TGTTTTGGATGTGATGTGCTGGCGGGGACATCCTTTTTATGACTGTCAGACTGATTTCCGATTC
TACTGGATGAATTCAAAGTTACCAGAAGAAGAAGGACTTGGAGAGAAAACCAAGATTAATCCCT
TTAAGTTTGTGGGGCTTAAGAATTTCCCGTGTACCCCTGAGAGCCTGTGCAAGGTGCTGTCTAT
GGATTTTCCTTTTGAGGTAGATGGACTGCTCTTCTACCACAAACAGACCCACTATAGCCCGGGG
AGTACCCCTTTGGTGGGCTGGCTGCGCCCCTACATGGTGTCAGATATTCTAGGTGTAGCTGTTC
CAGCTGGTCCTCTGACCACCAAGCCAGAATATGCTGGGCACCAGCTCCAACAGATTATTGAGCA
CAAGAGGAGTCAGGAGGACACAAAGGAGAAACTCACACACAAGGCTTCTGAGAATGGCCACTAT
GAGCTGGAGCACCTGTCTACTCCCAAGCTGAGGAGTCCTCCCCACAGCTCTGAGAGCCTCATGG
ACAGCTAAACTGGACAACCCATGAAAGACTGGGGCACAGGGCAGTGATGATAGCCATAGGTGAC
CTCACTTCAGAGCAGACTTCCCAAACCCATGCTGCCAAAAACAGGTTGCCCCCGTCTGGAACGT
TGGCTCAGACTGTTGGGGGTGGGTCTCTTTCGGATGGAGTTGGAATCCAGAGAGATATGAATAT
CTCTTGATGTGTTAAGTATATCCTAGTCCACCTTGTAAATATATGTGATTCTTAAGAAAAAAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243124 ⟹ XP_006243186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,134 - 66,276,876 (+)	NCBI
mRatBN7.2	8	57,348,178 - 57,380,912 (+)	NCBI
Rnor_6.0	8	61,615,670 - 61,648,398 (+)	NCBI
Rnor_5.0	8	60,184,262 - 60,224,290 (+)	NCBI

Sequence:

show sequence

CTGGCCTTGTCTACTTTGGAGTTCTCTCTCAGCGCAAGCTGTAACTTCTTCCGACGGATTCTGG
CTTCACCGCTGTTACCTGTGGAGGCCGGCCAGTCTTGCGGGTCTCGGATTTGGCCATCTTTCTG
TCGTCGTATTCCAGACAGACTGGCCCTAACTCATGAGGAACATTAATGTGTAGCAAGGCGAATT
CTATAACCGAGAAACAGACAACTCCATTGCCAGAGAGACAGCAGAGGGGAGGACGGCAGAGTTC
ACGGACGCGTGGTGGGAGCATCTGTAGCGCTGGAGAAGAGGCTTGGTGGGCCTGACACTTAAGA
GTTCGTTTGCTTCTTTCCTCGGCCTCCTGCCTTGCTGCTTTGCAGGTGTATGCCACCTAGGGTA
CCGTTAGGGACCGTTTCAATGGCATACTGAGGGGGAAGCGCAGTAATTATCTACCGAATACTCC
CCGTTATATTACAAAGACTGTAATGCACACCTTAAATTCACACTGATAATGGCACTTTTAACAA
ATTTTCTAAGAAAGCACTCTTAGCTGGGCGCGGTGGCGCACGCCTTTAATCTCAACGCTCAGTA
GGCAGGCAGAGCTCTATGAGTTCGAGGCCAGCCTGGTCTACAAGGCGAGTTCCATTACAGCCAG
GGAAGATGGAAGAACTGAGCCAAGCCCTAGCTAGTAGCTTTTCTGTGTCTCAAGAACTGAACAG
CACAGCTGCCCCACACCCTCGCCTGTCTCAATACAAGTCCAAGTATAGCTCCTTGGAGCAGAGT
GAGCGGCGGCGCCAGTTGCTAGAGCTGCAGAAATCCAAGCGGTTGGACTATGTGAACCATGCCA
GAAGACTGGCTGAAGATGACTGGACAGGGATGGAGAGTGGGGAAGAGGAGAAGAAGAAAGATGA
GGAGGAAATGGATTTGGACCCTGTCAAGAAGTTACCAAAACGCTATGCTAATCAATTGATGCTT
TCTGAGTGGTTAATTGACGTCCCTTCAGATTTGGGGCAGGAATGGATTGTGGTTGTGTGCCCTG
TTGGGAAAAGAGCCCTTATCGTGGCCTCCAGGGGCTCAACCAGTGCCTACACTAAGAGTGGCTA
CTGCGTCAATAGGTTTTCTTCCCTTCTTCCAGGAGGCAATAGGAGAAACTCAACAACAGCCAAA
GACTACACCATTCTGGACTGCATTTACAGTGAAGTGAACCAGACATACTATGTTTTGGATGTGA
TGTGCTGGCGGGGACATCCTTTTTATGACTGTCAGACTGATTTCCGATTCTACTGGATGAATTC
AAAGTTACCAGAAGAAGAAGGACTTGGAGAGAAAACCAAGATTAATCCCTTTAAGTTTGTGGGG
CTTAAGAATTTCCCGTGTACCCCTGAGAGCCTGTGCAAGGTGCTGTCTATGGATTTTCCTTTTG
AGGTAGATGGACTGCTCTTCTACCACAAACAGACCCACTATAGCCCGGGGAGTACCCCTTTGGT
GGGCTGGCTGCGCCCCTACATGGTGTCAGATATTCTAGGTGTAGCTGTTCCAGCTGGTCCTCTG
ACCACCAAGCCAGAATATGCTGGGCACCAGCTCCAACAGATTATTGAGCACAAGAGGAGTCAGG
AGGACACAAAGGAGAAACTCACACACAAGGCTTCTGAGAATGGCCACTATGAGCTGGAGCACCT
GTCTACTCCCAAGCTGAGGAGTCCTCCCCACAGCTCTGAGAGCCTCATGGACAGCTAAACTGGA
CAACCCATGAAAGACTGGGGCACAGGGCAGTGATGATAGCCATAGGTGACCTCACTTCAGAGCA
GACTTCCCAAACCCATGCTGCCAAAAACAGGTTGCCCCCGTCTGGAACGTTGGCTCAGACTGTT
GGGGGTGGGTCTCTTTCGGATGGAGTTGGAATCCAGAGAGATATGAATATCTCTTGATGTGTTA
AGTATATCCTAGTCCACCTTGTAAATATATGTGATTCTTAAGAAAAA

hide sequence

RefSeq Acc Id:

XM_006243128 ⟹ XP_006243190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,147 - 66,284,987 (+)	NCBI
mRatBN7.2	8	57,348,178 - 57,388,345 (+)	NCBI
Rnor_6.0	8	61,615,670 - 61,654,809 (+)	NCBI
Rnor_5.0	8	60,184,262 - 60,224,290 (+)	NCBI

Sequence:

show sequence

CTGGCCTTGTCTACTTTGGAGTTCTCTCTCAGCGCAAGCTGTAACTTCTTCCGACGGATTCTGG
CTTCACCGCTGTTACCTGTGGAGGCCGGCCAGTCTTGCGGGTCTCGGATTTGGCCATCTTTCTG
TCGTCGTATTCCAGACAGACTGGCCCTAACTCATGAGGAACATTAATGTGTAGCAAGGCGAATT
CTATAACCGAGAAACAGACAACTCCATTGCCAGAGAGACAGCAGAGGGGAGGACGGCAGAGTTC
ACGGACGCGTGGTGGGAGCATCTGTAGCGCTGGAGAAGAGGCTTGGTGGGCCTGACACTTAAGA
GTTCGTTTGCTTCTTTCCTCGGCCTCCTGCCTTGCTGCTTTGCAGGTGTATGCCACCTAGGGTA
CCGTTAGGGACCGTTTCAATGGCATACTGAGGGGGAAGCGCAGTAATTATCTACCGAATACTCC
CCGTTATATTACAAAGACTGTAATGCACACCTTAAATTCACACTGATAATGGCACTTTTAACAA
ATTTTCTAAGAAAGCACTCTTAGCTGGGCGCGGTGGCGCACGCCTTTAATCTCAACGCTCAGTA
GGCAGGCAGAGCTCTATGAGTTCGAGGCCAGCCTGGTCTACAAGGCGAGTTCCATTACAGCCAG
GGAAGATGGAAGAACTGAGCCAAGCCCTAGCTAGTAGCTTTTCTGTGTCTCAAGAACTGAACAG
CACAGCTGCCCCACACCCTCGCCTGTCTCAATACAAGTCCAAGTATAGCTCCTTGGAGCAGAGT
GAGCGGCGGCGCCAGTTGCTAGAGCTGCAGAAATCCAAGCGGTTGGACTATGTGAACCATGCCA
GAAGACTGGCTGAAGATGACTGGACAGGGATGGAGAGTGGGGAAGAGGAGAAGAAGAAAGATGA
GGAGGAAATGGATTTGGACCCTGTCAAGAAGTTACCAAAACGCTATGCTAATCAATTGATGCTT
TCTGAGTGGTTAATTGACGTCCCTTCAGATTTGGGGCAGGAATGGATTGTGGTTGTGTGCCCTG
TTGGGAAAAGAGCCCTTATCGTGGCCTCCAGGGGCTCAACCAGTGCCTACACTAAGAGTGGCTA
CTGCGTCAATAGGTTTTCTTCCCTTCTTCCAGGAGGCAATAGGAGAAACTCAACAACAGCCAAA
GACTACACCATTCTGGACTGCATTTACAGTGAAGTGAACCAGACATACTATGTTTTGGATGTGA
TGTGCTGGCGGGGACATCCTTTTTATGACTGTCAGACTGATTTCCGATTCTACTGGATGAATTC
AAAGTTACCAGAAGAAGAAGGACTTGGAGAGAAAACCAAGATTAATCCCTTTAAGTTTGTGGGG
CTTAAGAATTTCCCGTGTACCCCTGAGAGCCTGTGCAAGGTGCTGTCTATGGATTTTCCTTTTG
AGATCTGCGTTTTATGGATCTGTGCACTCTCTGGCACTAAAGGGTCCTCCGAATTTGGCTTACA
TCACAGTGGACTGATGGATAGAAGACCCTTAGAATGCTGGATTCGATGGAGTGTGTCTGTGATC
CCAGCATCAGGACTTAAAGGTAGTTGTGCATCAATAGCTACAAAGTAAGTCTGAGGCCAATCTG
GGTTATATGAGACCCCATCTCAAAAAATCAAAACCAAAATCAGTACAGGCTGGACGCCTTGGCA
GATACTGGTAACCTCAGCACTTGGTAACCTCAGCACTGACATGACTACAGGTTTGTTAGTGCTG
CCCTACTCTTCCTAGGGAGTTCCAGGTCAGCCAGGGCTACAGAGGGAGACTGTC

hide sequence

RefSeq Acc Id:

XM_039081666 ⟹ XP_038937594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,147 - 66,278,298 (+)	NCBI
mRatBN7.2	8	57,348,178 - 57,382,177 (+)	NCBI

RefSeq Acc Id:

XM_039081668 ⟹ XP_038937596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,147 - 66,271,347 (+)	NCBI
mRatBN7.2	8	57,348,178 - 57,374,516 (+)	NCBI

RefSeq Acc Id:

XM_039081669 ⟹ XP_038937597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,138 - 66,271,347 (+)	NCBI
mRatBN7.2	8	57,348,178 - 57,375,524 (+)	NCBI

RefSeq Acc Id:

XM_039081670 ⟹ XP_038937598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,243,684 - 66,271,347 (+)	NCBI
mRatBN7.2	8	57,348,061 - 57,375,524 (+)	NCBI

RefSeq Acc Id:

XM_063265666 ⟹ XP_063121736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,147 - 66,286,651 (+)	NCBI

RefSeq Acc Id:

XM_063265667 ⟹ XP_063121737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,243,662 - 66,286,651 (+)	NCBI

RefSeq Acc Id:

XM_063265668 ⟹ XP_063121738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,147 - 66,286,651 (+)	NCBI

RefSeq Acc Id:

XM_063265670 ⟹ XP_063121740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,147 - 66,286,651 (+)	NCBI

RefSeq Acc Id:

XM_063265671 ⟹ XP_063121741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,242,940 - 66,286,651 (+)	NCBI

RefSeq Acc Id:

XM_063265672 ⟹ XP_063121742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,243,683 - 66,271,347 (+)	NCBI

RefSeq Acc Id:

XM_063265673 ⟹ XP_063121743

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	66,244,096 - 66,278,298 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004270	(Get FASTA)	NCBI Sequence Viewer
	XP_006243186	(Get FASTA)	NCBI Sequence Viewer
	XP_006243190	(Get FASTA)	NCBI Sequence Viewer
	XP_038937594	(Get FASTA)	NCBI Sequence Viewer
	XP_038937596	(Get FASTA)	NCBI Sequence Viewer
	XP_038937597	(Get FASTA)	NCBI Sequence Viewer
	XP_038937598	(Get FASTA)	NCBI Sequence Viewer
	XP_063121736	(Get FASTA)	NCBI Sequence Viewer
	XP_063121737	(Get FASTA)	NCBI Sequence Viewer
	XP_063121738	(Get FASTA)	NCBI Sequence Viewer
	XP_063121740	(Get FASTA)	NCBI Sequence Viewer
	XP_063121741	(Get FASTA)	NCBI Sequence Viewer
	XP_063121742	(Get FASTA)	NCBI Sequence Viewer
	XP_063121743	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79451	(Get FASTA)	NCBI Sequence Viewer
	EDL95594	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007261.4
	ENSRNOP00055043616
	ENSRNOP00060026458
	ENSRNOP00065024069
GenBank Protein	Q68FP5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004270 ⟸ NM_001004270

- UniProtKB:

Q68FP5 (UniProtKB/Swiss-Prot), A6J4S2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEELSQALASSFSVSQELNSTAAPHPRLSQYKSKYSSLEQSERRRQLLELQKSKRLDYVNHARR
LAEDDWTGMESGEEEKKKDEEEMDLDPVKKLPKRYANQLMLSEWLIDVPSDLGQEWIVVVCPVG
KRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTTAKDYTILDCIYSEVNQTYYVLDVMC
WRGHPFYDCQTDFRFYWMNSKLPEEEGLGEKTKINPFKFVGLKNFPCTPESLCKVLSMDFPFEV
DGLLFYHKQTHYSPGSTPLVGWLRPYMVSDILGVAVPAGPLTTKPEYAGHQLQQIIEHKRSQED
TKEKLTHKASENGHYELEHLSTPKLRSPPHSSESLMDS

hide sequence

RefSeq Acc Id:

XP_006243190 ⟸ XM_006243128

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSSRPAWSTRRVPLQPGKMEELSQALASSFSVSQELNSTAAPHPRLSQYKSKYSSLEQSERRRQ
LLELQKSKRLDYVNHARRLAEDDWTGMESGEEEKKKDEEEMDLDPVKKLPKRYANQLMLSEWLI
DVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTTAKDYTIL
DCIYSEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMNSKLPEEEGLGEKTKINPFKFVGLKNFP
CTPESLCKVLSMDFPFEICVLWICALSGTKGSSEFGLHHSGLMDRRPLECWIRWSVSVIPASGL
KGSCASIATK

hide sequence

RefSeq Acc Id:

XP_006243186 ⟸ XM_006243124

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSSRPAWSTRRVPLQPGKMEELSQALASSFSVSQELNSTAAPHPRLSQYKSKYSSLEQSERRRQ
LLELQKSKRLDYVNHARRLAEDDWTGMESGEEEKKKDEEEMDLDPVKKLPKRYANQLMLSEWLI
DVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTTAKDYTIL
DCIYSEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMNSKLPEEEGLGEKTKINPFKFVGLKNFP
CTPESLCKVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDILGVAVPAGPLTTKPE
YAGHQLQQIIEHKRSQEDTKEKLTHKASENGHYELEHLSTPKLRSPPHSSESLMDS

hide sequence

Ensembl Acc Id:

ENSRNOP00000007261 ⟸ ENSRNOT00000007261

RefSeq Acc Id:	XP_038937598 ⟸ XM_039081670
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038937594 ⟸ XM_039081666
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038937597 ⟸ XM_039081669
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038937596 ⟸ XM_039081668
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063121741 ⟸ XM_063265671
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121737 ⟸ XM_063265667
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121742 ⟸ XM_063265672
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063121743 ⟸ XM_063265673
- Peptide Label:	isoform X10
- UniProtKB:	A6J4S1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121736 ⟸ XM_063265666
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121740 ⟸ XM_063265670
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063121738 ⟸ XM_063265668
- Peptide Label:	isoform X2

Protein Domains

IBB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q68FP5-F1-model_v2	AlphaFold	Q68FP5	1-358	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696004

Promoter ID:

EPDNEW_R6529

Type:

initiation region

Name:

Snupn_1

Description:

snurportin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	61,615,618 - 61,615,678	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303191	AgrOrtholog
BioCyc Gene	G2FUF-30337	BioCyc
Ensembl Genes	ENSRNOG00000005426	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00055030414	UniProtKB/Swiss-Prot
	ENSRNOG00060018818	UniProtKB/Swiss-Prot
	ENSRNOG00065018082	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007261.5	UniProtKB/Swiss-Prot
	ENSRNOT00055052766	UniProtKB/Swiss-Prot
	ENSRNOT00060032448	UniProtKB/Swiss-Prot
	ENSRNOT00065030286	UniProtKB/Swiss-Prot
Gene3D-CATH	DNA ligase/mRNA capping enzyme	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7121061	IMAGE-MGC_LOAD
InterPro	Importin-a_IBB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Snurportin-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Snurportin-1_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Snurportin1_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:316108	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:95000	IMAGE-MGC_LOAD
NCBI Gene	316108	ENTREZGENE
PANTHER	PTHR13403	UniProtKB/Swiss-Prot
	SNURPORTIN-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	UniProtKB/TrEMBL
Pfam	Snurportin1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPN1_m3Gcap_bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Snupn	PhenoGen
PIRSF	Snurportin-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	IBB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005426	RatGTEx
	ENSRNOG00055030414	RatGTEx
	ENSRNOG00060018818	RatGTEx
	ENSRNOG00065018082	RatGTEx
Superfamily-SCOP	DNA ligase/mRNA capping enzyme, catalytic domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A6J4S1	ENTREZGENE, UniProtKB/TrEMBL
	A6J4S2	ENTREZGENE, UniProtKB/TrEMBL
	Q68FP5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Snupn	snurportin 1	Rnut1	RNA, U transporter 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Rnut1	RNA, U transporter 1			Symbol and Name status set to approved	1299863	APPROVED
2005-07-14	Rnut1	RNA, U transporter 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)