Tspan5 (tetraspanin 5) - Rat Genome Database

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Gene: Tspan5 (tetraspanin 5) Rattus norvegicus
Analyze
Symbol: Tspan5
Name: tetraspanin 5
RGD ID: 1303176
Description: Predicted to enable enzyme binding activity. Predicted to be involved in several processes, including positive regulation of Notch signaling pathway; protein localization to plasma membrane; and regulation of membrane protein ectodomain proteolysis. Predicted to be located in actin cytoskeleton; nucleoplasm; and plasma membrane. Orthologous to human TSPAN5 (tetraspanin 5); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: tetraspan 5; tetraspanin-5; Tm4sf9; transmembrane 4 superfamily member 9; Tspan-5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,967,521 - 230,139,012 (+)NCBIGRCr8
mRatBN7.22227,294,180 - 227,469,361 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,294,217 - 227,465,664 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2235,044,298 - 235,207,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,944,059 - 233,107,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,808,665 - 227,971,910 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,058,186 - 244,224,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,058,186 - 244,224,058 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,587,481 - 262,753,105 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42236,314,737 - 236,487,072 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12236,436,906 - 236,471,800 (+)NCBI
Celera2219,449,291 - 219,612,375 (+)NCBICelera
Cytogenetic Map2q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-vinylcyclohexene dioxide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
Licochalcone B  (ISO)
maneb  (ISO)
menadione  (ISO)
methoxychlor  (EXP)
mifepristone  (EXP)
N,N-diethyl-m-toluamide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IEA,ISO)
membrane  (IEA)
nucleoplasm  (IEA,ISO)
plasma membrane  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Specific tetraspanin functions. Hemler ME J Cell Biol 2001 Dec 24;155(7):1103-7. Epub 2001 Dec 24.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23035126   PMID:23091066   PMID:36795458  


Genomics

Comparative Map Data
Tspan5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82229,967,521 - 230,139,012 (+)NCBIGRCr8
mRatBN7.22227,294,180 - 227,469,361 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,294,217 - 227,465,664 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2235,044,298 - 235,207,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02232,944,059 - 233,107,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02227,808,665 - 227,971,910 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,058,186 - 244,224,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,058,186 - 244,224,058 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02262,587,481 - 262,753,105 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42236,314,737 - 236,487,072 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12236,436,906 - 236,471,800 (+)NCBI
Celera2219,449,291 - 219,612,375 (+)NCBICelera
Cytogenetic Map2q44NCBI
TSPAN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38498,470,367 - 98,658,611 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl498,470,367 - 98,658,611 (-)EnsemblGRCh38hg38GRCh38
GRCh37499,391,518 - 99,579,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36499,612,421 - 99,798,750 (-)NCBINCBI36Build 36hg18NCBI36
Celera496,686,187 - 96,874,635 (-)NCBICelera
Cytogenetic Map4q23NCBI
HuRef495,128,912 - 95,317,094 (-)NCBIHuRef
CHM1_1499,368,380 - 99,556,673 (-)NCBICHM1_1
T2T-CHM13v2.04101,785,330 - 101,973,565 (-)NCBIT2T-CHM13v2.0
Tspan5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,447,609 - 138,610,194 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,447,956 - 138,613,666 (+)EnsemblGRCm39 Ensembl
GRCm383138,741,848 - 138,904,433 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,742,195 - 138,907,905 (+)EnsemblGRCm38mm10GRCm38
MGSCv373138,405,159 - 138,567,388 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363138,679,582 - 138,841,811 (+)NCBIMGSCv36mm8
Celera3145,169,944 - 145,332,005 (+)NCBICelera
Cytogenetic Map3H1NCBI
cM Map364.42NCBI
Tspan5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554058,725,761 - 8,759,785 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554058,725,761 - 8,759,784 (-)NCBIChiLan1.0ChiLan1.0
TSPAN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2396,537,654 - 96,718,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1496,815,612 - 96,994,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0490,872,988 - 91,052,345 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14101,536,950 - 101,717,526 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4101,536,950 - 101,717,228 (-)Ensemblpanpan1.1panPan2
TSPAN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13220,707,449 - 20,878,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3220,709,539 - 20,878,426 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3221,053,555 - 21,228,770 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03220,890,676 - 21,061,654 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3220,890,676 - 21,061,716 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13220,859,415 - 21,029,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03220,685,159 - 20,855,851 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03219,041,028 - 19,211,757 (+)NCBIUU_Cfam_GSD_1.0
Tspan5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530120,832,188 - 20,999,948 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493671749,752 - 217,654 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493671749,797 - 217,567 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8121,657,325 - 121,843,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18121,657,320 - 121,843,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28130,843,562 - 131,031,806 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1746,610,841 - 46,788,761 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl746,609,602 - 46,788,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603725,042,011 - 25,220,101 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475726,557,898 - 26,733,209 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475726,558,052 - 26,732,932 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan5
1290 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:688
Count of miRNA genes:297
Interacting mature miRNAs:378
Transcripts:ENSRNOT00000021381
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat

Markers in Region
RH137962  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,346,410 - 227,346,538 (+)MAPPERmRatBN7.2
Rnor_6.02244,109,646 - 244,109,773NCBIRnor6.0
Rnor_5.02262,638,938 - 262,639,065UniSTSRnor5.0
RGSC_v3.42236,367,438 - 236,367,565UniSTSRGSC3.4
Celera2219,501,347 - 219,501,474UniSTS
RH 3.4 Map21594.2UniSTS
Cytogenetic Map2q44UniSTS
RH143648  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,292,606 - 227,292,751 (+)MAPPERmRatBN7.2
Rnor_6.02244,056,582 - 244,056,726NCBIRnor6.0
Rnor_5.02262,585,877 - 262,586,021UniSTSRnor5.0
RGSC_v3.42236,313,131 - 236,313,275UniSTSRGSC3.4
Celera2219,447,687 - 219,447,831UniSTS
RH 3.4 Map21595.1UniSTS
Cytogenetic Map2q44UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 18 18 5 18 2 74 35 37 11
Low 1 29 39 23 14 23 8 9 4 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021381   ⟹   ENSRNOP00000021381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,294,217 - 227,465,663 (+)Ensembl
Rnor_6.0 Ensembl2244,058,186 - 244,224,058 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109275   ⟹   ENSRNOP00000077542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,297,534 - 227,465,655 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109413   ⟹   ENSRNOP00000085734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,294,217 - 227,465,663 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111381   ⟹   ENSRNOP00000084759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,294,217 - 227,465,663 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119237   ⟹   ENSRNOP00000081518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2227,297,534 - 227,465,664 (+)Ensembl
RefSeq Acc Id: NM_001004090   ⟹   NP_001004090
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,967,576 - 230,139,012 (+)NCBI
mRatBN7.22227,294,217 - 227,465,664 (+)NCBI
Rnor_6.02244,058,186 - 244,224,059 (+)NCBI
Rnor_5.02262,587,481 - 262,753,105 (+)NCBI
RGSC_v3.42236,314,737 - 236,487,072 (+)RGD
Celera2219,449,291 - 219,612,375 (+)RGD
Sequence:
RefSeq Acc Id: XM_039102726   ⟹   XP_038958654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82229,967,521 - 230,139,012 (+)NCBI
mRatBN7.22227,294,180 - 227,469,361 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001004090   ⟸   NM_001004090
- UniProtKB: Q498N9 (UniProtKB/Swiss-Prot),   Q68VK5 (UniProtKB/Swiss-Prot),   A6HW42 (UniProtKB/TrEMBL),   A0A8I6A0T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000021381   ⟸   ENSRNOT00000021381
RefSeq Acc Id: XP_038958654   ⟸   XM_039102726
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2L2 (UniProtKB/TrEMBL),   A0A8I6A0T6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081518   ⟸   ENSRNOT00000119237
RefSeq Acc Id: ENSRNOP00000085734   ⟸   ENSRNOT00000109413
RefSeq Acc Id: ENSRNOP00000084759   ⟸   ENSRNOT00000111381
RefSeq Acc Id: ENSRNOP00000077542   ⟸   ENSRNOT00000109275

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68VK5-F1-model_v2 AlphaFold Q68VK5 1-268 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303176 AgrOrtholog
BioCyc Gene G2FUF-51047 BioCyc
Ensembl Genes ENSRNOG00000015913 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055011108 UniProtKB/Swiss-Prot
  ENSRNOG00060025883 UniProtKB/Swiss-Prot
  ENSRNOG00065023804 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021381 ENTREZGENE
  ENSRNOT00000021381.6 UniProtKB/Swiss-Prot
  ENSRNOT00000109275.1 UniProtKB/TrEMBL
  ENSRNOT00000109413.1 UniProtKB/TrEMBL
  ENSRNOT00000111381.1 UniProtKB/TrEMBL
  ENSRNOT00000119237.1 UniProtKB/TrEMBL
  ENSRNOT00055018844 UniProtKB/Swiss-Prot
  ENSRNOT00060044889 UniProtKB/Swiss-Prot
  ENSRNOT00065040849 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1450.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7315329 IMAGE-MGC_LOAD
InterPro Tetraspanin UniProtKB/Swiss-Prot
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_animals UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362048 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:114212 IMAGE-MGC_LOAD
NCBI Gene 362048 ENTREZGENE
PANTHER PTHR19282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TETRASPANIN-5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tspan5 PhenoGen
PIRSF Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015913 RatGTEx
  ENSRNOG00055011108 RatGTEx
  ENSRNOG00060025883 RatGTEx
  ENSRNOG00065023804 RatGTEx
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y5Y9_RAT UniProtKB/TrEMBL
  A0A8I6A0T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G825_RAT UniProtKB/TrEMBL
  A6HW42 ENTREZGENE, UniProtKB/TrEMBL
  Q498N9 ENTREZGENE
  Q68VK5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q498N9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Tspan5  tetraspanin 5  Tm4sf9  transmembrane 4 superfamily member 9  Symbol and Name updated 1299863 APPROVED
2005-07-14 Tm4sf9  transmembrane 4 superfamily member 9      Symbol and Name status set to provisional 70820 PROVISIONAL