Il22ra2 (interleukin 22 receptor subunit alpha 2) - Rat Genome Database

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Gene: Il22ra2 (interleukin 22 receptor subunit alpha 2) Rattus norvegicus
Analyze
Symbol: Il22ra2
Name: interleukin 22 receptor subunit alpha 2
RGD ID: 1303169
Description: Predicted to enable interleukin-22 binding activity and interleukin-22 receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to act upstream of or within negative regulation of inflammatory response. Predicted to be located in cytosol. Predicted to be active in plasma membrane. Orthologous to human IL22RA2 (interleukin 22 receptor subunit alpha 2); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Crf2-s1; cytokine receptor family II soluble 1; cytokine receptor family II soluble 1 precursor; cytokine receptor family type 2, soluble 1; IL-22 receptor subunit alpha-2; IL-22BP; IL-22R-alpha-2; IL-22RA2; IL22BP; interleukin 22 receptor, alpha 2; interleukin-22 receptor subunit alpha-2; interleukin-22-binding protein; LOC365056
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Eae29
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,172,238 - 16,228,009 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl116,184,113 - 16,197,950 (+)EnsemblGRCr8
mRatBN7.2114,353,736 - 14,377,844 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,364,489 - 14,377,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx114,121,132 - 14,134,482 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,122,997 - 20,136,347 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0114,344,637 - 14,357,992 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,084,136 - 15,107,423 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,093,599 - 15,106,954 (+)Ensemblrn6Rnor6.0
Rnor_5.0116,640,651 - 16,655,187 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4114,877,588 - 14,890,943 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera112,808,021 - 12,821,291 (+)NCBICelera
RGSC_v3.1114,877,649 - 14,891,005 (+)NCBI
Cytogenetic Map1p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Cloning of murine IL-22 receptor alpha 2 and comparison with its human counterpart. Weiss B, etal., Genes Immun 2004 Aug;5(5):330-6.
Additional References at PubMed
PMID:11390453   PMID:11390454   PMID:12700595   PMID:21041731   PMID:23075849   PMID:26329427   PMID:28356382   PMID:31292217  


Genomics

Comparative Map Data
Il22ra2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8116,172,238 - 16,228,009 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl116,184,113 - 16,197,950 (+)EnsemblGRCr8
mRatBN7.2114,353,736 - 14,377,844 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,364,489 - 14,377,844 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx114,121,132 - 14,134,482 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0120,122,997 - 20,136,347 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0114,344,637 - 14,357,992 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0115,084,136 - 15,107,423 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,093,599 - 15,106,954 (+)Ensemblrn6Rnor6.0
Rnor_5.0116,640,651 - 16,655,187 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4114,877,588 - 14,890,943 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera112,808,021 - 12,821,291 (+)NCBICelera
RGSC_v3.1114,877,649 - 14,891,005 (+)NCBI
Cytogenetic Map1p12NCBI
IL22RA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386137,143,820 - 137,173,644 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6137,143,820 - 137,173,648 (-)Ensemblhg38GRCh38
GRCh376137,464,957 - 137,494,781 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366137,506,650 - 137,536,478 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346137,506,649 - 137,536,478NCBI
Celera6138,204,971 - 138,234,799 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6135,027,025 - 135,056,810 (-)NCBIHuRef
CHM1_16137,727,177 - 137,757,008 (-)NCBICHM1_1
T2T-CHM13v2.06138,332,180 - 138,362,006 (-)NCBIT2T-CHM13v2.0
Il22ra2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391019,497,776 - 19,510,429 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1019,497,746 - 19,510,429 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381019,622,028 - 19,634,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1019,621,998 - 19,634,681 (+)Ensemblmm10GRCm38
MGSCv371019,341,834 - 19,354,487 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361019,311,450 - 19,322,732 (+)NCBIMGSCv36mm8
Celera1019,520,442 - 19,533,052 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map108.52NCBI
Il22ra2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543622,211,175 - 22,220,566 (+)Ensembl
ChiLan1.0NW_00495543622,208,267 - 22,219,667 (+)NCBIChiLan1.0ChiLan1.0
IL22RA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25157,110,863 - 157,140,553 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16155,009,673 - 155,039,367 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06134,904,634 - 134,934,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16138,992,202 - 139,021,843 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6138,992,202 - 139,021,843 (-)EnsemblpanPan2panpan1.1
IL22RA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1129,611,096 - 29,631,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl129,611,722 - 29,631,473 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha130,493,645 - 30,514,393 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0129,772,385 - 29,793,348 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl129,772,670 - 29,793,943 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1129,656,996 - 29,677,759 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0129,542,085 - 29,562,839 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,841,398 - 29,862,175 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Il22ra2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946124,712,652 - 124,727,951 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365604,493,279 - 4,506,973 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365604,493,279 - 4,506,973 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL22RA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,073,610 - 27,091,236 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1127,073,481 - 27,090,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2130,466,967 - 30,484,071 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL22RA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11336,254,113 - 36,273,279 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1336,255,116 - 36,271,258 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660408,437,656 - 8,464,879 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il22ra2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624886650,373 - 659,502 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624886650,376 - 659,502 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Il22ra2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12216,938,510 - 216,952,377 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Il22ra2
515 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:456
Count of miRNA genes:227
Interacting mature miRNAs:268
Transcripts:ENSRNOT00000016354
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 9 59 162 76 75 44 90 44 6 307 181 11 141 60 89 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016354   ⟹   ENSRNOP00000016354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl116,184,113 - 16,197,950 (+)Ensembl
mRatBN7.2 Ensembl114,364,489 - 14,377,844 (+)Ensembl
Rnor_6.0 Ensembl115,093,599 - 15,106,954 (+)Ensembl
RefSeq Acc Id: NM_001003404   ⟹   NP_001003404
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,184,129 - 16,197,484 (+)NCBI
mRatBN7.2114,364,489 - 14,377,844 (+)NCBI
Rnor_6.0115,093,599 - 15,106,954 (+)NCBI
Rnor_5.0116,640,651 - 16,655,187 (+)NCBI
RGSC_v3.4114,877,588 - 14,890,943 (+)RGD
Celera112,808,021 - 12,821,291 (+)RGD
Sequence:
RefSeq Acc Id: XM_063270275   ⟹   XP_063126345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,183,945 - 16,228,009 (+)NCBI
RefSeq Acc Id: XM_063270277   ⟹   XP_063126347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,183,945 - 16,228,009 (+)NCBI
RefSeq Acc Id: XM_063270279   ⟹   XP_063126349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,172,238 - 16,228,009 (+)NCBI
RefSeq Acc Id: XM_063270284   ⟹   XP_063126354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,176,348 - 16,195,689 (+)NCBI
RefSeq Acc Id: XM_063270285   ⟹   XP_063126355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,183,902 - 16,194,662 (+)NCBI
RefSeq Acc Id: XM_063270290   ⟹   XP_063126360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8116,183,901 - 16,194,662 (+)NCBI
RefSeq Acc Id: NP_001003404   ⟸   NM_001003404
- Peptide Label: precursor
- UniProtKB: Q7TNI4 (UniProtKB/Swiss-Prot),   A6JPB3 (UniProtKB/TrEMBL),   A0A8L2UIY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016354   ⟸   ENSRNOT00000016354
RefSeq Acc Id: XP_063126349   ⟸   XM_063270279
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126354   ⟸   XM_063270284
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126360   ⟸   XM_063270290
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126355   ⟸   XM_063270285
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126345   ⟸   XM_063270275
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126347   ⟸   XM_063270277
- Peptide Label: isoform X1
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TNI4-F1-model_v2 AlphaFold Q7TNI4 1-229 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689511
Promoter ID:EPDNEW_R36
Type:single initiation site
Name:Il22ra2_1
Description:interleukin 22 receptor subunit alpha 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0115,093,583 - 15,093,643EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303169 AgrOrtholog
BioCyc Gene G2FUF-62226 BioCyc
Ensembl Genes ENSRNOG00000012259 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016354 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro FN3_dom UniProtKB/Swiss-Prot
  FN3_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Interferon/interleukin_rcp_dom UniProtKB/Swiss-Prot
  Type-II_Cytokine-TF_Rcpt UniProtKB/Swiss-Prot
KEGG Report rno:444986 UniProtKB/Swiss-Prot
NCBI Gene 444986 ENTREZGENE
PANTHER INTERFERON/INTERLEUKIN RECEPTOR UniProtKB/Swiss-Prot
  INTERLEUKIN-22 RECEPTOR SUBUNIT ALPHA-2 UniProtKB/Swiss-Prot
Pfam Interfer-bind UniProtKB/Swiss-Prot
  Tissue_fac UniProtKB/Swiss-Prot
PhenoGen Il22ra2 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012259 RatGTEx
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot
UniProt A0A8L2UIY2 ENTREZGENE, UniProtKB/TrEMBL
  A6JPB3 ENTREZGENE, UniProtKB/TrEMBL
  I22R2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Il22ra2  interleukin 22 receptor subunit alpha 2  Il22ra2  interleukin 22 receptor, alpha 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-13 Il22ra2  interleukin 22 receptor, alpha 2  Crf2-s1  cytokine receptor family II soluble 1 precursor  Symbol and Name updated 1299863 APPROVED