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Gene: Ncam2 (neural cell adhesion molecule 2) Rattus norvegicus

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Symbol:

Ncam2

Name:

neural cell adhesion molecule 2

RGD ID:

1303131

Description:

Predicted to enable identical protein binding activity. Involved in axonal fasciculation. Predicted to be located in axon. Predicted to be active in neuron projection and synaptic membrane. Orthologous to human NCAM2 (neural cell adhesion molecule 2); PARTICIPATES IN prion disease pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

fasciclin II; Ocam; OCAM-GPI

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCAM2 (neural cell adhesion molecule 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ncam2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncam2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NCAM2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCAM2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ncam2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCAM2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCAM2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncam2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ncam2 (neural cell adhesion molecule 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LIPI (lipase I)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NCAM2 (neural cell adhesion molecule 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ncam2 (neural cell adhesion molecule 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ncam2 (neural cell adhesion molecule 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:152904	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:152904	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ncam-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ncam-1	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Fas2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ncam2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ncam2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	33,591,748 - 34,078,788 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	33,591,713 - 34,078,788 (+)	Ensembl				GRCr8
mRatBN7.2	11	20,104,974 - 20,592,168 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	20,104,925 - 20,591,984 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	28,761,953 - 29,257,661 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	21,463,433 - 21,958,042 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	20,651,012 - 21,146,747 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	19,669,922 - 20,705,063 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	20,471,764 - 20,705,063 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	23,856,942 - 24,353,041 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	20,409,948 - 20,911,422 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	19,468,505 - 20,502,763 (+)	NCBI		Celera
RGSC_v3.1	11	20,423,191 - 20,911,422 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

clobetasol (ISO)

Cuprizon (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethylparaben (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glycidol (EXP)

indole-3-methanol (EXP)

ivermectin (ISO)

lead diacetate (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

methoxychlor (EXP)

N-acetyl-L-cysteine (EXP)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

okadaic acid (ISO)

paracetamol (EXP,ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

trichloroethene (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axonal fasciculation (IEP)

cell adhesion (IEA)

Cellular Component

axon (IEA,ISO)

membrane (IEA)

neuron projection (IBA)

plasma membrane (IEA,ISO)

synaptic membrane (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

prion disease pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Differential expression of the mammalian homologue of fasciclin II during olfactory development in vivo and in vitro.	Hamlin JA, etal., J Comp Neurol 2004 Jun 28;474(3):438-52.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15677725	PMID:21300289

Genomics

Comparative Map Data

Ncam2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	33,591,748 - 34,078,788 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	33,591,713 - 34,078,788 (+)	Ensembl				GRCr8
mRatBN7.2	11	20,104,974 - 20,592,168 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	20,104,925 - 20,591,984 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	28,761,953 - 29,257,661 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	21,463,433 - 21,958,042 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	20,651,012 - 21,146,747 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	19,669,922 - 20,705,063 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	20,471,764 - 20,705,063 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	23,856,942 - 24,353,041 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	20,409,948 - 20,911,422 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	19,468,505 - 20,502,763 (+)	NCBI		Celera
RGSC_v3.1	11	20,423,191 - 20,911,422 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

NCAM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	20,998,409 - 21,543,329 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	20,998,409 - 21,543,329 (+)	Ensembl			hg38	GRCh38
GRCh37	21	22,370,727 - 22,915,650 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	21,292,504 - 21,833,085 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	21,292,503 - 21,833,085	NCBI
Celera	21	7,541,720 - 8,085,871 (+)	NCBI		Celera
Cytogenetic Map	21	q21.1	NCBI
HuRef	21	7,759,027 - 8,304,119 (+)	NCBI		HuRef
CHM1_1	21	21,932,803 - 22,475,089 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	19,360,795 - 19,909,385 (+)	NCBI		T2T-CHM13v2.0

Ncam2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	80,997,501 - 81,425,549 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	80,997,585 - 81,423,716 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	81,200,697 - 81,624,290 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	81,200,697 - 81,626,828 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	81,200,942 - 81,624,535 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	81,083,363 - 81,480,397 (+)	NCBI		MGSCv36	mm8
Celera	16	81,402,043 - 81,825,338 (+)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	45.89	NCBI

Ncam2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	21,730,434 - 22,215,377 (+)	Ensembl
ChiLan1.0	NW_004955407	21,730,331 - 22,220,664 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCAM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	17,454,640 - 17,999,508 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	12,291,281 - 12,838,832 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	7,703,278 - 8,250,763 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	21,061,757 - 21,602,254 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	21,344,602 - 21,601,438 (+)	Ensembl			panPan2	panpan1.1

NCAM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	16,912,768 - 17,434,854 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	16,912,908 - 17,429,510 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	16,950,212 - 17,475,661 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	16,954,178 - 17,471,017 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	16,954,372 - 17,470,285 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	16,959,755 - 17,482,428 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	16,972,239 - 17,488,890 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	17,374,303 - 17,889,819 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ncam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	18,126,187 - 18,346,662 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936505	13,045,344 - 13,078,553 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936822	1,036,205 - 1,189,028 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936822	1,033,660 - 1,189,131 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCAM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	185,176,461 - 185,679,885 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	185,176,282 - 185,679,891 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	195,314,227 - 195,518,758 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCAM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	71,075,834 - 71,622,707 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	71,076,654 - 71,442,031 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	82,397,301 - 82,957,086 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncam2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	9,327,345 - 9,822,852 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	9,327,125 - 9,826,922 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ncam2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	58,149,711 - 58,618,057 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ncam2
2391 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	462
Count of miRNA genes:	253
Interacting mature miRNAs:	302
Transcripts:	ENSRNOT00000002895
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

RH130167

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	20,495,578 - 20,495,786 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	183,061,435 - 183,061,643 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	20,612,679 - 20,612,886	NCBI	Rnor6.0
Rnor_6.0	2	196,658,319 - 196,658,526	NCBI	Rnor6.0
Rnor_5.0	11	24,260,859 - 24,261,066	UniSTS	Rnor5.0
Rnor_5.0	2	216,157,018 - 216,157,225	UniSTS	Rnor5.0
Cytogenetic Map	11	q11	UniSTS
Cytogenetic Map	2	q34	UniSTS

AU048257

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	20,260,896 - 20,261,026 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	20,378,194 - 20,378,323	NCBI	Rnor6.0
Rnor_5.0	11	24,026,450 - 24,026,579	UniSTS	Rnor5.0
RGSC_v3.4	11	20,580,575 - 20,580,704	UniSTS	RGSC3.4
Celera	11	20,175,494 - 20,175,625	UniSTS
Cytogenetic Map	11	q11	UniSTS

NCAM2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	20,586,819 - 20,587,545 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	20,703,613 - 20,704,338	NCBI	Rnor6.0
Rnor_5.0	11	24,351,591 - 24,352,316	UniSTS	Rnor5.0
RGSC_v3.4	11	20,909,972 - 20,910,697	UniSTS	RGSC3.4
Celera	11	20,501,313 - 20,502,038	UniSTS
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	59	185	76	73	44	36	44	6	258	126	12	173	64	93	29	32	32

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_203409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY495695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY495696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002895 ⟹ ENSRNOP00000002895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	33,591,713 - 34,078,788 (+)	Ensembl
mRatBN7.2 Ensembl	11	20,104,925 - 20,591,984 (+)	Ensembl
Rnor_6.0 Ensembl	11	20,474,483 - 20,705,063 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078127 ⟹ ENSRNOP00000074294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	33,842,702 - 34,078,788 (+)	Ensembl
mRatBN7.2 Ensembl	11	20,355,890 - 20,591,984 (+)	Ensembl
Rnor_6.0 Ensembl	11	20,471,764 - 20,703,553 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082417 ⟹ ENSRNOP00000074311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	33,591,738 - 34,028,676 (+)	Ensembl
mRatBN7.2 Ensembl	11	20,104,925 - 20,539,538 (+)	Ensembl
Rnor_6.0 Ensembl	11	20,474,483 - 20,656,340 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137505 ⟹ ENSRNOP00000099751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	33,833,118 - 34,078,788 (+)	Ensembl

RefSeq Acc Id:

NM_203409 ⟹ NP_981954

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	33,591,823 - 34,078,788 (+)	NCBI
mRatBN7.2	11	20,105,003 - 20,591,984 (+)	NCBI
Rnor_6.0	11	19,669,922 - 20,705,063 (+)	NCBI
Rnor_5.0	11	23,856,942 - 24,353,041 (+)	NCBI
RGSC_v3.4	11	20,409,948 - 20,911,422 (+)	RGD
Celera	11	19,468,505 - 20,502,763 (+)	NCBI

Sequence:

show sequence

AACACACACACACACACACACACACACACACACACCCATTAAAGCATAAAATAAATGTTTTAAA
ACACATGAAGCCCATTAGTGCAGCCAGTCCCCGCGCGGGCTGCGGGCGGATGGGGCACCCGGGA
GCGGCGGCGGGCTAGCAGAGGCGGCCGTGGCAGCTGAAGGTTCTCTCTCCGGGGCTGGACTTAA
TAACTTTGGAACTGTCCGCCGGTGTCACGTCCTGAACATGAGCCTCCTCCTCTCCTTCTACCTG
CTCGGGTTGCTTGTCAGTAGCGGGCAAGCTCTTCTTCAAGTGACAATTTCACTTAGCAAAGTAG
AGCTTAGTGTGGGTGAATCTAAATTCTTCACATGTACAGCAATTGGCGAGCCTGAGAGTATAGA
CTGGTACAACCCTCAAGGAGAGAAGATCATTTCAACGCAGAGGGTTATGCTACAGAAGGAGGGC
GTCAGGTCTCGACTAACCATCTACAATGCCAACATAGAAGATGCAGGAATATATCGCTGTCAAG
CGACAGATGCCAAAGGGCAGACGCAGGAAGCTACAGTAGTTTTGGAAATTTACCAAAAACTCAC
CTTCAGAGAAGTGCTGTCCCCTCAAGAGTTCAAGCAAGGGGAGGATGCAGAAGTGGTTTGCAGA
GTGAGCAGTTCCCCCGCCCCTGCGGTCAGCTGGCTGTATCACAATGAGGAAGTCACCACCATCC
CCGACAATCGGTTTGCTGTGCTTGCAAACAATAATTTGCAGATCCTCAACATCAATAAAAGTGA
TGAAGGTATATACAGATGTGAAGGAAGAGTGGAGGCCAGGGGAGAGATTGACTTCCGGGACATT
ATTGTTATTGTAAACGTTCCGCCAGCAATCGTGATGCCCCAAAAGTCCTTCAATGCCACTGCAG
AGAGAGGAGAAGAGATGACCTTAACCTGCAAGGCCTCGGGCTCCCCAGATCCCGCCATCTCTTG
GTTCAGGAATGGCAAACTCATTGAAGAAAATGAAAAGTATATTTTAAAGGGCAGTAATACAGAG
CTCACGGTCAGAAACATAATCAATAAAGATGGGGGCTCTTATGTCTGCAAAGCCACAAATAAGG
CAGGGGAAGATCAGAAGCAGGCCTTCCTTCAAGTTTTCGTGCAGCCTCATATATTACAACTCAA
GAATGAGACAACGTCTGAAAATGGTCACGTCACACTCATCTGTGAAGCAGAAGGGGAGCCTGTT
CCAGAAATCACATGGAAAAGAGCCATAGACGGAGTCACATTTTCTGAAGGTGACAAGAGCCCAG
ATGGCCGCATCGAAGTTAAAGGGCAGCATGGCCGATCTTCACTGCACATCAGAGATGTGAAGTT
GTCAGATTCGGGAAGATATGACTGTGAGGCCGCGAGTAGAATTGGCGGGCACCAGAGAAGCATG
CATCTTGACATCGAATATGCTCCTAAGTTTGTTTCAAATCAGACAATGTATTACTCTTGGGAAG
GAAATCCAATCAATATAAGTTGTGATGTGAAAGCAAATCCACCTGCCTCAATCCACTGGAGAAG
AGAGAAATTGGTCTTACCAGCTGAAAACACCACTCATTTAAAAACTCACAGTGTGGGAAGAAAG
ATGATACTCGAGATTGCCCGTACATCAGACAATGACTTTGGACGATATAACTGCACTGCGACTA
ACCGCTTAGGCACGAGATTCCAGGAGTATATTCTTGAGTTAGCAGATGTCCCCTCTAGTCCCCG
TGGAGTGAAGATTATAGAGCTGTCACAGACCACAGCCAAGATATCTTTCAATAAACCCGAGTCC
CATGGAGGTGTGCCCATTCATCACTACCAAGTGGATGTCATGGAAGAGACATCAGAAACCTGGA
AGATAGTACGCTCCCATGGAGTTCAAACGACAGTTGTTTTGAGCAGCCTGGAACCAAATACTAC
ATATGAAGTCAGGGTTGCAGCAGTGAATGGCAAAGGACAAGGAGACTACAGTAAAATAGAAATA
TTCCAGACACTGCCAGTTCGTGAGCCAAGTCCCCCTTCCATACATGGACAGCCAAGCAGTGGGA
AGAGTTTTAAAATCAGCATCACCAAGCAAGATGATGGAGGGGCTCCCATTTTAGAATACATTGT
GAAATACAGAAGTAAAGACAAGGAAGATCAGTGGCTAGAGAAGAAGGTGCAGGGAAATAAAGAC
CACATTATCTTGGAGCATCTGCAGTGGACAATGGGTTATGAAGTTCAAATCACAGCTGCCAACA
GACTTGGGTATTCTGAGCCGACTGTATATGAGTTCAGCATGCCTCCAAAGCCCAACATTATTAA
AGACACACTTTTTAATGGCCTAGGCCTCGGAGCCATCATTGGCCTTGGAGTCGCTGCCCTTTTG
CTAATCCTTGTGGTAACAGATGTCAGCTGCTTCTTCATTCGACAATGTGGGTTGTTAATGTGCA
TCACCAGAAGAATGTGTGGGAAAAAGAGTGGCTCCAGTGGAAAAAGTAAAGAACTTGAAGAAGG
AAAAGCAGCTTACCTGAAAGATGGATCAAAAGAACCAATAGTGGAAATGAGAACAGAGGATGAA
AGAATCACTAACCATGAAGACGGGAGTCCAGTAAATGAGCCAAATGAAACCACACCACTAACAG
AACCTGAAAAATTGCCTTTAAAAGAAGAAAATGGAAAAGAAGTTTTAAATGCAGAAACTATAGA
AATTAAAGTGTCTAATGACATCATCCAGTCTAAAGAAGATGACATCAAGGCATAACCACAAGTT
TCAGCAACTCGGTCAGCACCACAAGGAGTATTTGGATTGCAGTGACACTATGACCAAAACTATT
CCATTGACCTTAATTTCTAGGGAAAAGTCTAGCTTGGAATAGCTTGTACACATATACATACGAT
CAACCCCTCCTGCCACAGCCCATTTCCTTCTGTTATTGTGGTGATGGTGGTTATTTTGTTAAGA
ATTCGGTATAAAGGCTTGATTGGCACCAATTTTAGGGTTTCGGTTTCATTCTATAATTGAAGTA
CTGCAATTTCTTAGATGGCTAAAGTGCTTTTTCTTTTTTGTCTTCTGTGACACCAACAAATACA
TTTCTCTCTAAAACATTAGGTTGTAATGGAAGGCAGAGCGAAAGCATTGTGAGCTAAATGTGTA
GGAAGTGTGTGAGAGCACTGCATGTTTAAGATTCTTGTCTTGGGCAAACACTCTTGTGGGGGCT
TTCAGACTAAGACAAAGGCACATCCGGGGAATTTCAGGGAACCCAGGCTTGAAAGAGCCAATCA
GTTACCTTTCGCAGATATTAGAAATTGAAAAATCATTGGAGAACTCTTTCGACTTATGGCCACA
TTGCGTTTTCAACATTGATCTTAGGTATATTGATACCAGGACAAAATTGTTACACATTCGAAAG
AAGCTTAGTTGTGTGTAAAATTAGAGTAGAAAGATTCCTAAATCTCTTTTTATGTATACCATAT
TCACTCACCATGGATTACACAAAAAGTAAATGTATTACACGTAAAAATGGTATTGATTTCTGCC
CTCAGCTTCAAATAAAGTGAATTTAAATGGGAAAATATCAATATGATGTCTTGATATATTTATA
AATACATGATTATTTTTATTTATAAAATAATTTATCAAGAATGAGGGTGTTTTCAAGTACTTCA
ACTCATTTTAGATAAAATTTTGGGGTATGCCTTAGATGATCGTTAATATAGTGTCCCTCATAAA
GTGAAAATGGCTACCAACAATAAAATTAGTGTTAAACATATTTAATTTAACATACAAATGTGCC
AGAAAAAAACCTGAACAATTGAAACACTACTAATGTTTTTAAAACATTGCATTCTAAAATCCAT
TTAAAACCTACTTCAAGAATTTTGATAAACAGCTATGGTTGAAGCAACCATTTAACAATTCAAC
ATAAAGTTTCTAATATTACATGTTAAGTATTATATAAGAATATATTAGTTACTAACAAGCTATG
CAAACTCCCTGAGGTCAAAGTCTGAATTTTGATTTAACTTATGAGAAACAAACAAACAAAATAC
CACATTTGTGGCTATCAGTATACATAGGTTAGGGGCAGGGGTTTGAAGATTTCTTAAGTCAGAG
TCTAGAAAGTTTCTAAAAACTCCCTCCTCCTCACAACCTTTGGTGTCTGGTTATCAAGTAAACA
GCTTCAACATTAATGTGTTGGAGAATACATTCTAATAGCTTATTGAAGGAATGCTTTTAACAAT
GCAGGTGGATATGCTCTTATACAAT

hide sequence

RefSeq Acc Id:

XM_039088217 ⟹ XP_038944145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	33,591,772 - 34,078,762 (+)	NCBI
mRatBN7.2	11	20,104,975 - 20,592,168 (+)	NCBI

RefSeq Acc Id:

XM_039088218 ⟹ XP_038944146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	33,591,748 - 34,030,523 (+)	NCBI
mRatBN7.2	11	20,104,974 - 20,543,720 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_981954	(Get FASTA)	NCBI Sequence Viewer
	XP_038944145	(Get FASTA)	NCBI Sequence Viewer
	XP_038944146	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAS18425	(Get FASTA)	NCBI Sequence Viewer
	AAS18426	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002895
	ENSRNOP00000002895.7
	ENSRNOP00000074294.2
	ENSRNOP00000074311
	ENSRNOP00000074311.2
	ENSRNOP00000099751.1

RefSeq Acc Id:	NP_981954 ⟸ NM_203409
- Peptide Label:	precursor
- UniProtKB:	F1M8G9 (UniProtKB/TrEMBL), Q6RKB3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLLLSFYLLGLLVSSGQALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST QRVMLQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVLSPQEFKQ GEDAEVVCRVSSSPAPAVSWLYHNEEVTTIPDNRFAVLANNNLQILNINKSDEGIYRCEGRVEA RGEIDFRDIIVIVNVPPAIVMPQKSFNATAERGEEMTLTCKASGSPDPAISWFRNGKLIEENEK YILKGSNTELTVRNIINKDGGSYVCKATNKAGEDQKQAFLQVFVQPHILQLKNETTSENGHVTL ICEAEGEPVPEITWKRAIDGVTFSEGDKSPDGRIEVKGQHGRSSLHIRDVKLSDSGRYDCEAAS RIGGHQRSMHLDIEYAPKFVSNQTMYYSWEGNPINISCDVKANPPASIHWRREKLVLPAENTTH LKTHSVGRKMILEIARTSDNDFGRYNCTATNRLGTRFQEYILELADVPSSPRGVKIIELSQTTA KISFNKPESHGGVPIHHYQVDVMEETSETWKIVRSHGVQTTVVLSSLEPNTTYEVRVAAVNGKG QGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKISITKQDDGGAPILEYIVKYRSKDKEDQWL EKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDTLFNGLGLGAI IGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMCGKKSGSSGKSKELEEGKAAYLKDGSKEP IVEMRTEDERITNHEDGSPVNEPNETTPLTEPEKLPLKEENGKEVLNAETIEIKVSNDIIQSKE DDIKA hide sequence

Ensembl Acc Id:

ENSRNOP00000074311 ⟸ ENSRNOT00000082417

Ensembl Acc Id:

ENSRNOP00000002895 ⟸ ENSRNOT00000002895

Ensembl Acc Id:

ENSRNOP00000074294 ⟸ ENSRNOT00000078127

RefSeq Acc Id:	XP_038944146 ⟸ XM_039088218
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K7R3 (UniProtKB/TrEMBL), A6JL49 (UniProtKB/TrEMBL), Q6RKB2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944145 ⟸ XM_039088217
- Peptide Label:	isoform X1
- UniProtKB:	Q6RKB3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099751 ⟸ ENSRNOT00000137505

Protein Domains

Fibronectin type-III Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K7P9-F1-model_v2	AlphaFold	A0A0G2K7P9	1-836	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303131	AgrOrtholog
BioCyc Gene	G2FUF-22111	BioCyc
Ensembl Genes	ENSRNOG00000002126	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002895	ENTREZGENE
	ENSRNOT00000002895.9	UniProtKB/TrEMBL
	ENSRNOT00000078127.3	UniProtKB/TrEMBL
	ENSRNOT00000082417	ENTREZGENE
	ENSRNOT00000082417.3	UniProtKB/TrEMBL
	ENSRNOT00000137505.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	Neural/epithelial_adhesion	UniProtKB/TrEMBL
	Neural_cell_adh	UniProtKB/TrEMBL
KEGG Report	rno:288280	UniProtKB/TrEMBL
NCBI Gene	288280	ENTREZGENE
PANTHER	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	UniProtKB/TrEMBL
	DPR-INTERACTING PROTEIN ETA, ISOFORM B-RELATED	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
PhenoGen	Ncam2	PhenoGen
PRINTS	NCAMFAMILY	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002126	RatGTEx
SMART	FN3	UniProtKB/TrEMBL
	IGc2	UniProtKB/TrEMBL
	IGv	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	FN_III-like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A0G2K7P9_RAT	UniProtKB/TrEMBL
	A0A0G2K7R3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LEM6_RAT	UniProtKB/TrEMBL
	A6JL49	ENTREZGENE, UniProtKB/TrEMBL
	F1M8G9	ENTREZGENE, UniProtKB/TrEMBL
	Q6RKB2	ENTREZGENE, UniProtKB/TrEMBL
	Q6RKB3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-02-14	Ncam2	neural cell adhesion molecule 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)