Ablim2 (actin binding LIM protein family, member 2) - Rat Genome Database

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Pathways
Gene: Ablim2 (actin binding LIM protein family, member 2) Rattus norvegicus
Analyze
Symbol: Ablim2
Name: actin binding LIM protein family, member 2
RGD ID: 1303094
Description: Predicted to enable actin filament binding activity. Predicted to be involved in lamellipodium assembly. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in myofibril. Predicted to be active in actin cytoskeleton. Orthologous to human ABLIM2 (actin binding LIM protein family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: abLIM-2; actin-binding LIM protein 2; actin-binding LIM protein family member 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,090,046 - 79,214,986 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)EnsemblGRCr8
mRatBN7.21474,865,409 - 74,990,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1479,307,813 - 79,431,924 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,548,687 - 80,672,784 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,993,677 - 77,117,778 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,044,217 - 80,169,491 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)Ensemblrn6Rnor6.0
Rnor_5.01479,675,672 - 79,799,079 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41480,499,878 - 80,624,108 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1473,798,130 - 73,922,188 (-)NCBICelera
RGSC_v3.11480,502,268 - 80,626,499 (-)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
High Myopia  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IBA,ISO)
cytoplasm  (IEA)
myofibril  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:16005990   PMID:17194709   PMID:29476059  


Genomics

Comparative Map Data
Ablim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,090,046 - 79,214,986 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)EnsemblGRCr8
mRatBN7.21474,865,409 - 74,990,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1479,307,813 - 79,431,924 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,548,687 - 80,672,784 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,993,677 - 77,117,778 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,044,217 - 80,169,491 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)Ensemblrn6Rnor6.0
Rnor_5.01479,675,672 - 79,799,079 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41480,499,878 - 80,624,108 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1473,798,130 - 73,922,188 (-)NCBICelera
RGSC_v3.11480,502,268 - 80,626,499 (-)NCBI
Cytogenetic Map14q21NCBI
ABLIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3847,965,327 - 8,158,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl47,965,310 - 8,158,832 (-)Ensemblhg38GRCh38
GRCh3747,967,054 - 8,160,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,017,938 - 8,211,459 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3448,085,111 - 8,278,609NCBI
Celera47,868,198 - 8,052,469 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef47,888,374 - 8,079,979 (-)NCBIHuRef
CHM1_147,965,064 - 8,158,514 (-)NCBICHM1_1
T2T-CHM13v2.047,943,879 - 8,137,197 (-)NCBIT2T-CHM13v2.0
Ablim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,915,200 - 36,042,323 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,915,224 - 36,042,317 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38535,757,855 - 35,884,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,757,880 - 35,884,973 (+)Ensemblmm10GRCm38
MGSCv37536,100,529 - 36,227,628 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36536,074,792 - 36,201,831 (+)NCBIMGSCv36mm8
Celera533,231,426 - 33,358,448 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map518.75NCBI
Ablim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)Ensembl
ChiLan1.0NW_0049555142,800,758 - 2,920,926 (+)NCBIChiLan1.0ChiLan1.0
ABLIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,247,435 - 8,445,155 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan148,175,443 - 8,372,335 (-)NCBINHGRI_mPanPan1
PanPan1.148,029,394 - 8,225,050 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,031,074 - 8,224,912 (-)EnsemblpanPan2panpan1.1
ABLIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1359,838,929 - 59,980,971 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl359,838,934 - 59,986,723 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha362,487,740 - 62,629,499 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0360,311,073 - 60,453,659 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,311,076 - 60,453,669 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1359,807,453 - 59,949,385 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,009,926 - 60,152,407 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,368,560 - 60,510,409 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ablim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,725,286 - 65,860,955 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,428,475 - 19,562,488 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647719,426,962 - 19,562,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,916,775 - 3,054,966 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.182,948,948 - 3,054,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,172,649 - 4,301,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12743,916,680 - 44,108,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666051234,454 - 430,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ablim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,779,278 - 23,891,360 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475523,778,298 - 23,891,476 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ablim2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11169,197,066 - 69,321,974 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ablim2
583 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:619
Count of miRNA genes:243
Interacting mature miRNAs:309
Transcripts:ENSRNOT00000010482, ENSRNOT00000058315
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH133082  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21474,865,942 - 74,866,138 (+)MAPPERmRatBN7.2
Rnor_6.01480,044,740 - 80,044,935NCBIRnor6.0
Rnor_5.01479,676,195 - 79,676,390UniSTSRnor5.0
RGSC_v3.41480,499,540 - 80,499,735UniSTSRGSC3.4
Celera1473,797,792 - 73,797,987UniSTS
Cytogenetic Map14q21UniSTS
BF391064  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21474,892,070 - 74,892,222 (+)MAPPERmRatBN7.2
Rnor_6.01480,070,858 - 80,071,009NCBIRnor6.0
Rnor_5.01479,701,914 - 79,702,065UniSTSRnor5.0
RGSC_v3.41480,525,904 - 80,526,055UniSTSRGSC3.4
Celera1473,823,959 - 73,824,110UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 83 59 6 347 183 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010057397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ703892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ703893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010482   ⟹   ENSRNOP00000010482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)Ensembl
Rnor_6.0 Ensembl1480,045,766 - 80,130,139 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000058315   ⟹   ENSRNOP00000055116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)Ensembl
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079769   ⟹   ENSRNOP00000068643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)Ensembl
Rnor_6.0 Ensembl1480,056,269 - 80,169,431 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091652   ⟹   ENSRNOP00000070221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)Ensembl
Rnor_6.0 Ensembl1480,045,766 - 80,130,139 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097779   ⟹   ENSRNOP00000089295
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
mRatBN7.2 Ensembl1474,866,281 - 74,951,001 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117114   ⟹   ENSRNOP00000077852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
mRatBN7.2 Ensembl1474,866,281 - 74,951,001 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000143802   ⟹   ENSRNOP00000109116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,090,923 - 79,214,972 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169593   ⟹   ENSRNOP00000098863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1479,101,217 - 79,214,972 (-)Ensembl
RefSeq Acc Id: NM_001001514   ⟹   NP_001001514
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,923 - 79,214,972 (-)NCBI
mRatBN7.21474,866,281 - 74,990,334 (-)NCBI
Rnor_6.01480,045,078 - 80,169,472 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
RGSC_v3.41480,499,878 - 80,624,108 (-)RGD
Celera1473,798,130 - 73,922,188 (-)RGD
Sequence:
RefSeq Acc Id: NM_001177695   ⟹   NP_001171166
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,923 - 79,214,972 (-)NCBI
mRatBN7.21474,866,281 - 74,990,334 (-)NCBI
Rnor_6.01480,045,078 - 80,169,472 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
Celera1473,798,130 - 73,922,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063273362   ⟹   XP_063129432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,562 (-)NCBI
RefSeq Acc Id: XM_063273363   ⟹   XP_063129433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,214,986 (-)NCBI
RefSeq Acc Id: XM_063273364   ⟹   XP_063129434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,559 (-)NCBI
RefSeq Acc Id: XM_063273366   ⟹   XP_063129436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,557 (-)NCBI
RefSeq Acc Id: XM_063273367   ⟹   XP_063129437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,214,986 (-)NCBI
RefSeq Acc Id: XM_063273368   ⟹   XP_063129438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,573 (-)NCBI
RefSeq Acc Id: XM_063273369   ⟹   XP_063129439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,214,986 (-)NCBI
RefSeq Acc Id: XM_063273370   ⟹   XP_063129440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,533 (-)NCBI
RefSeq Acc Id: XM_063273371   ⟹   XP_063129441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,572 (-)NCBI
RefSeq Acc Id: XM_063273372   ⟹   XP_063129442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,552 (-)NCBI
RefSeq Acc Id: XM_063273373   ⟹   XP_063129443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,549 (-)NCBI
RefSeq Acc Id: XM_063273374   ⟹   XP_063129444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,562 (-)NCBI
RefSeq Acc Id: XM_063273375   ⟹   XP_063129445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,547 (-)NCBI
RefSeq Acc Id: XM_063273376   ⟹   XP_063129446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,551 (-)NCBI
RefSeq Acc Id: XM_063273377   ⟹   XP_063129447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,571 (-)NCBI
RefSeq Acc Id: XM_063273378   ⟹   XP_063129448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,567 (-)NCBI
RefSeq Acc Id: XM_063273379   ⟹   XP_063129449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,557 (-)NCBI
RefSeq Acc Id: XM_063273380   ⟹   XP_063129450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,214,984 (-)NCBI
RefSeq Acc Id: XM_063273381   ⟹   XP_063129451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,559 (-)NCBI
RefSeq Acc Id: XM_063273383   ⟹   XP_063129453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,556 (-)NCBI
RefSeq Acc Id: XM_063273384   ⟹   XP_063129454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,566 (-)NCBI
RefSeq Acc Id: XM_063273385   ⟹   XP_063129455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,187,564 (-)NCBI
RefSeq Acc Id: XM_063273386   ⟹   XP_063129456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,116,646 - 79,214,986 (-)NCBI
RefSeq Acc Id: XM_063273387   ⟹   XP_063129457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,090,046 - 79,160,934 (-)NCBI
RefSeq Acc Id: XR_010057387
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,572 (-)NCBI
RefSeq Acc Id: XR_010057388
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,571 (-)NCBI
RefSeq Acc Id: XR_010057389
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,574 (-)NCBI
RefSeq Acc Id: XR_010057390
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,572 (-)NCBI
RefSeq Acc Id: XR_010057391
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,548 (-)NCBI
RefSeq Acc Id: XR_010057392
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,559 (-)NCBI
RefSeq Acc Id: XR_010057393
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,567 (-)NCBI
RefSeq Acc Id: XR_010057394
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,556 (-)NCBI
RefSeq Acc Id: XR_010057395
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,567 (-)NCBI
RefSeq Acc Id: XR_010057396
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,214,986 (-)NCBI
RefSeq Acc Id: XR_010057397
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,100,610 - 79,187,572 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001001514 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171166 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129432 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129433 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129434 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129436 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129437 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129438 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129439 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129440 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129441 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129442 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129443 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129444 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129445 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129446 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129447 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129448 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129449 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129450 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129451 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129454 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129455 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129456 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129457 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAG28314 (Get FASTA)   NCBI Sequence Viewer  
  CAG28315 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010482
  ENSRNOP00000055116
  ENSRNOP00000055116.5
  ENSRNOP00000070221
GenBank Protein Q6KC51 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001001514   ⟸   NM_001001514
- Peptide Label: isoform b
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171166   ⟸   NM_001177695
- Peptide Label: isoform a
- UniProtKB: Q6KC50 (UniProtKB/Swiss-Prot),   Q6KC51 (UniProtKB/Swiss-Prot),   A0A140TAH7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068643   ⟸   ENSRNOT00000079769
Ensembl Acc Id: ENSRNOP00000010482   ⟸   ENSRNOT00000010482
Ensembl Acc Id: ENSRNOP00000055116   ⟸   ENSRNOT00000058315
Ensembl Acc Id: ENSRNOP00000070221   ⟸   ENSRNOT00000091652
Ensembl Acc Id: ENSRNOP00000089295   ⟸   ENSRNOT00000097779
Ensembl Acc Id: ENSRNOP00000077852   ⟸   ENSRNOT00000117114
RefSeq Acc Id: XP_063129439   ⟸   XM_063273369
- Peptide Label: isoform X7
- UniProtKB: A0A0H2UHF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129437   ⟸   XM_063273367
- Peptide Label: isoform X5
- UniProtKB: A0A0H2UHF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129433   ⟸   XM_063273363
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129450   ⟸   XM_063273380
- Peptide Label: isoform X18
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL),   A0A0G2JXC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129438   ⟸   XM_063273368
- Peptide Label: isoform X6
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129441   ⟸   XM_063273371
- Peptide Label: isoform X9
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129447   ⟸   XM_063273377
- Peptide Label: isoform X15
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129448   ⟸   XM_063273378
- Peptide Label: isoform X16
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129454   ⟸   XM_063273384
- Peptide Label: isoform X21
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129455   ⟸   XM_063273385
- Peptide Label: isoform X22
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129444   ⟸   XM_063273374
- Peptide Label: isoform X12
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129432   ⟸   XM_063273362
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129434   ⟸   XM_063273364
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129451   ⟸   XM_063273381
- Peptide Label: isoform X19
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129449   ⟸   XM_063273379
- Peptide Label: isoform X17
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129436   ⟸   XM_063273366
- Peptide Label: isoform X4
- UniProtKB: A0A0H2UHF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129453   ⟸   XM_063273383
- Peptide Label: isoform X20
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129442   ⟸   XM_063273372
- Peptide Label: isoform X10
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129446   ⟸   XM_063273376
- Peptide Label: isoform X14
- UniProtKB: A0A140TAH7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129443   ⟸   XM_063273373
- Peptide Label: isoform X11
- UniProtKB: A0A0H2UHF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129445   ⟸   XM_063273375
- Peptide Label: isoform X13
- UniProtKB: A0A0H2UHF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129440   ⟸   XM_063273370
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JTB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129457   ⟸   XM_063273387
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063129456   ⟸   XM_063273386
- Peptide Label: isoform X23
Ensembl Acc Id: ENSRNOP00000098863   ⟸   ENSRNOT00000169593
Ensembl Acc Id: ENSRNOP00000109116   ⟸   ENSRNOT00000143802
Protein Domains
HP   LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6KC51-F1-model_v2 AlphaFold Q6KC51 1-612 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699394
Promoter ID:EPDNEW_R9912
Type:single initiation site
Name:Ablim2_1
Description:actin binding LIM protein family, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,169,463 - 80,169,523EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303094 AgrOrtholog
BioCyc Gene G2FUF-15329 BioCyc
Ensembl Genes ENSRNOG00000007882 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010482 ENTREZGENE
  ENSRNOT00000058315 ENTREZGENE
  ENSRNOT00000058315.6 UniProtKB/Swiss-Prot
  ENSRNOT00000091652 ENTREZGENE
Gene3D-CATH 1.10.950.10 UniProtKB/Swiss-Prot
  Cysteine Rich Protein UniProtKB/Swiss-Prot
InterPro AbLIM_anchor UniProtKB/Swiss-Prot
  Actin-binding_LIM UniProtKB/Swiss-Prot
  Villin_headpiece UniProtKB/Swiss-Prot
  Villin_headpiece_dom_sf UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
KEGG Report rno:360958 UniProtKB/Swiss-Prot
NCBI Gene 360958 ENTREZGENE
PANTHER ACTIN-BINDING LIM PROTEIN UniProtKB/Swiss-Prot
  PTHR24213:SF6 UniProtKB/Swiss-Prot
Pfam AbLIM_anchor UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  VHP UniProtKB/Swiss-Prot
PhenoGen Ablim2 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
  PS51089 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000007882 RatGTEx
SMART LIM UniProtKB/Swiss-Prot
  VHP UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF47050 UniProtKB/Swiss-Prot
UniProt A0A0G2JTB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JXC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0H2UHF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A140TAH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XWK5_RAT UniProtKB/TrEMBL
  A0A8I6ABD5_RAT UniProtKB/TrEMBL
  A0ABK0L7W4_RAT UniProtKB/TrEMBL
  A0ABK0LSX6_RAT UniProtKB/TrEMBL
  ABLM2_RAT UniProtKB/Swiss-Prot
  Q6KC50 ENTREZGENE
  Q6KC51 ENTREZGENE
UniProt Secondary Q6KC50 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-11-01 Ablim2  actin-binding LIM protein 2  Ablim2  actin binding LIM protein family, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-08-29 Ablim2  actin binding LIM protein family, member 2  Ablim2  actin-binding LIM protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ablim2  actin-binding LIM protein 2      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Ablim2  actin-binding LIM protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL