Nup35 (nucleoporin 35) - Rat Genome Database

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Gene: Nup35 (nucleoporin 35) Rattus norvegicus
Analyze
Symbol: Nup35
Name: nucleoporin 35
RGD ID: 1303069
Description: Predicted to enable identical protein binding activity and phospholipid binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in NLS-bearing protein import into nucleus and nuclear pore organization. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Located in nuclear lamina. Orthologous to human NUP35 (nucleoporin 35); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 35 kDa nucleoporin; MGC93680; mitotic phosphoprotein 44; nuclear pore complex protein Nup53; nucleoporin Nup35; nucleoporin NUP53
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8385,965,907 - 85,991,659 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl385,945,080 - 85,992,027 (+)EnsemblGRCr8
mRatBN7.2365,555,203 - 65,594,488 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl365,558,968 - 65,585,130 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx368,911,643 - 68,937,209 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0377,495,202 - 77,520,768 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0375,258,930 - 75,284,498 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0367,866,784 - 67,896,828 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl367,870,111 - 67,896,153 (+)Ensemblrn6Rnor6.0
Rnor_5.0374,423,181 - 74,453,173 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4363,493,936 - 63,519,689 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera365,005,138 - 65,030,546 (+)NCBICelera
RGSC_v3.1363,390,307 - 63,416,059 (+)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Vertebrate Nup53 interacts with the nuclear lamina and is required for the assembly of a Nup93-containing complex. Hawryluk-Gara LA, etal., Mol Biol Cell. 2005 May;16(5):2382-94. Epub 2005 Feb 9.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7. Detection of two chromatin proteins which bind specifically to the 5'-flanking region of the rat prolactin gene. White BA, etal., Mol Cell Biol 1985 Nov;5(11):2967-74.
Additional References at PubMed
PMID:15489334   PMID:16962612   PMID:20439489  


Genomics

Comparative Map Data
Nup35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8385,965,907 - 85,991,659 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl385,945,080 - 85,992,027 (+)EnsemblGRCr8
mRatBN7.2365,555,203 - 65,594,488 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl365,558,968 - 65,585,130 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx368,911,643 - 68,937,209 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0377,495,202 - 77,520,768 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0375,258,930 - 75,284,498 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0367,866,784 - 67,896,828 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl367,870,111 - 67,896,153 (+)Ensemblrn6Rnor6.0
Rnor_5.0374,423,181 - 74,453,173 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4363,493,936 - 63,519,689 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera365,005,138 - 65,030,546 (+)NCBICelera
RGSC_v3.1363,390,307 - 63,416,059 (+)NCBI
Cytogenetic Map3q24NCBI
NUP35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382183,117,514 - 183,161,680 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2183,117,513 - 183,163,114 (+)Ensemblhg38GRCh38
GRCh372183,982,242 - 184,026,408 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362183,697,328 - 183,734,653 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342183,814,588 - 183,851,913NCBI
Celera2177,585,188 - 177,622,496 (+)NCBICelera
Cytogenetic Map2q32.1NCBI
HuRef2175,847,884 - 175,885,184 (+)NCBIHuRef
CHM1_12183,994,950 - 184,032,286 (+)NCBICHM1_1
T2T-CHM13v2.02183,606,527 - 183,650,714 (+)NCBIT2T-CHM13v2.0
Nup35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39280,469,156 - 80,490,415 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl280,447,580 - 80,489,250 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38280,638,812 - 80,660,071 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl280,617,236 - 80,658,906 (+)Ensemblmm10GRCm38
MGSCv37280,478,969 - 80,500,228 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36280,439,653 - 80,459,741 (+)NCBIMGSCv36mm8
Celera282,305,823 - 82,328,399 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map248.31NCBI
Nup35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540314,379,962 - 14,412,956 (-)Ensembl
ChiLan1.0NW_00495540314,381,591 - 14,415,394 (-)NCBIChiLan1.0ChiLan1.0
NUP35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21385,782,337 - 85,820,385 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B85,797,422 - 85,835,363 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B70,395,325 - 70,433,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B188,202,929 - 188,239,978 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B188,195,380 - 188,239,978 (+)EnsemblpanPan2panpan1.1
NUP35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13626,128,838 - 26,168,664 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3626,135,065 - 26,168,298 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3626,026,128 - 26,065,943 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03626,282,606 - 26,322,421 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3626,288,098 - 26,322,417 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13626,408,804 - 26,448,593 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03626,339,648 - 26,380,106 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03626,481,996 - 26,521,810 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nup35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303143,121,946 - 143,173,150 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650911,681,099 - 11,726,739 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650911,681,038 - 11,798,620 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1588,587,785 - 88,622,022 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11588,587,753 - 88,616,310 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21598,214,333 - 98,218,027 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11068,648,503 - 68,685,143 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1068,648,151 - 68,685,379 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040130,870,292 - 130,906,965 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248444,824,344 - 4,854,808 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248444,824,240 - 4,854,814 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nup35
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1557,817,253 - 57,840,193 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nup35
108 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:65
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000012628
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
RH129293  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2365,584,376 - 65,584,586 (+)MAPPERmRatBN7.2
mRatBN7.2873,495,102 - 73,495,313 (+)MAPPERmRatBN7.2
Rnor_6.0367,896,073 - 67,896,282NCBIRnor6.0
Rnor_6.0879,434,689 - 79,434,899NCBIRnor6.0
Rnor_5.0374,452,418 - 74,452,627UniSTSRnor5.0
RGSC_v3.4363,519,302 - 63,519,511UniSTSRGSC3.4
RGSC_v3.4877,363,860 - 77,364,070UniSTSRGSC3.4
Celera365,030,159 - 65,030,368UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012628   ⟹   ENSRNOP00000012628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl385,968,483 - 85,992,027 (+)Ensembl
mRatBN7.2 Ensembl365,561,586 - 65,585,130 (+)Ensembl
Rnor_6.0 Ensembl367,870,111 - 67,896,153 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113802   ⟹   ENSRNOP00000095061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl385,965,859 - 85,992,027 (+)Ensembl
mRatBN7.2 Ensembl365,558,968 - 65,585,130 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117333   ⟹   ENSRNOP00000086299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl385,967,215 - 85,992,027 (+)Ensembl
mRatBN7.2 Ensembl365,559,915 - 65,585,130 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169552   ⟹   ENSRNOP00000098709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl385,945,080 - 85,992,027 (+)Ensembl
RefSeq Acc Id: NM_001004229   ⟹   NP_001004229
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8385,965,907 - 85,991,659 (+)NCBI
mRatBN7.2365,559,010 - 65,584,764 (+)NCBI
Rnor_6.0367,870,568 - 67,896,460 (+)NCBI
Rnor_5.0374,423,181 - 74,453,173 (+)NCBI
RGSC_v3.4363,493,936 - 63,519,689 (+)RGD
Celera365,005,138 - 65,030,546 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001004229 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78914 (Get FASTA)   NCBI Sequence Viewer  
  EDL79286 (Get FASTA)   NCBI Sequence Viewer  
  EDL79287 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000095061
  ENSRNOP00000095061.1
GenBank Protein Q68FY1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001004229   ⟸   NM_001004229
- UniProtKB: Q68FY1 (UniProtKB/Swiss-Prot),   A0A8L2Q6A2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012628   ⟸   ENSRNOT00000012628
Ensembl Acc Id: ENSRNOP00000086299   ⟸   ENSRNOT00000117333
Ensembl Acc Id: ENSRNOP00000095061   ⟸   ENSRNOT00000113802
Ensembl Acc Id: ENSRNOP00000098709   ⟸   ENSRNOT00000169552
Protein Domains
RRM Nup35-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FY1-F1-model_v2 AlphaFold Q68FY1 1-325 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692174
Promoter ID:EPDNEW_R2698
Type:initiation region
Name:Nup35_1
Description:nucleoporin 35
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0367,870,553 - 67,870,613EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303069 AgrOrtholog
BioCyc Gene G2FUF-49221 BioCyc
Ensembl Genes ENSRNOG00000009290 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000113802 ENTREZGENE
  ENSRNOT00000113802.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7126643 IMAGE-MGC_LOAD
InterPro Nucleoporin_NUP53 UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_NUP35_dom UniProtKB/Swiss-Prot
KEGG Report rno:295692 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93680 IMAGE-MGC_LOAD
NCBI Gene 295692 ENTREZGENE
PANTHER NUCLEOPORIN NUP35 UniProtKB/Swiss-Prot
  PTHR21527 UniProtKB/Swiss-Prot
Pfam Nup35_RRM UniProtKB/Swiss-Prot
PhenoGen Nup35 PhenoGen
PIRSF Nucleoporin_NUP53 UniProtKB/Swiss-Prot
PROSITE RRM_NUP35 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009290 RatGTEx
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A8I6A1Y4_RAT UniProtKB/TrEMBL
  A0A8L2Q6A2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LF26_RAT UniProtKB/TrEMBL
  A6HMN5_RAT UniProtKB/TrEMBL
  A6HMN6_RAT UniProtKB/TrEMBL
  NUP35_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Nup35  nucleoporin 35      Name updated 1299863 APPROVED
2005-02-14 Nup35  mitotic phosphoprotein 44      Symbol and Name status set to provisional 70820 PROVISIONAL