Saraf (store-operated calcium entry-associated regulatory factor) - Rat Genome Database

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Gene: Saraf (store-operated calcium entry-associated regulatory factor) Rattus norvegicus
Analyze
Symbol: Saraf
Name: store-operated calcium entry-associated regulatory factor
RGD ID: 1303011
Description: Predicted to be involved in regulation of store-operated calcium entry. Predicted to be located in endoplasmic reticulum-plasma membrane contact site. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human SARAF (store-operated calcium entry associated regulatory factor); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: arrestin-E; MGC93866; similar to hypothetical protein MGC8721; SOCE-associated regulatory factor; Tmem66; transmembrane protein 66
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,720,404 - 64,738,653 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1664,720,418 - 64,738,653 (-)EnsemblGRCr8
mRatBN7.21658,017,231 - 58,035,481 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,017,231 - 58,035,545 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,356,916 - 63,375,174 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,770,573 - 66,788,829 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01661,991,182 - 62,009,436 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,735,189 - 61,753,438 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,735,181 - 61,753,476 (-)Ensemblrn6Rnor6.0
Rnor_5.01661,400,974 - 61,419,223 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41661,744,563 - 61,762,812 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,055,407 - 56,073,656 (-)NCBICelera
RGSC_v3.11661,744,641 - 61,762,887 (-)NCBI
Cytogenetic Map16q12.2NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8308033   PMID:15489334   PMID:22464749   PMID:31173198  


Genomics

Comparative Map Data
Saraf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,720,404 - 64,738,653 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1664,720,418 - 64,738,653 (-)EnsemblGRCr8
mRatBN7.21658,017,231 - 58,035,481 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,017,231 - 58,035,545 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,356,916 - 63,375,174 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,770,573 - 66,788,829 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01661,991,182 - 62,009,436 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,735,189 - 61,753,438 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,735,181 - 61,753,476 (-)Ensemblrn6Rnor6.0
Rnor_5.01661,400,974 - 61,419,223 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41661,744,563 - 61,762,812 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,055,407 - 56,073,656 (-)NCBICelera
RGSC_v3.11661,744,641 - 61,762,887 (-)NCBI
Cytogenetic Map16q12.2NCBI
SARAF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,063,003 - 30,083,208 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,063,003 - 30,083,208 (-)Ensemblhg38GRCh38
GRCh37829,920,519 - 29,940,724 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,040,173 - 30,060,191 (-)NCBIBuild 36Build 36hg18NCBI36
Celera828,879,934 - 28,899,952 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef828,465,396 - 28,485,413 (-)NCBIHuRef
CHM1_1830,122,971 - 30,142,994 (-)NCBICHM1_1
T2T-CHM13v2.0830,341,918 - 30,362,124 (-)NCBIT2T-CHM13v2.0
Saraf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,621,733 - 34,638,001 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,621,717 - 34,637,999 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38834,154,579 - 34,170,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,154,575 - 34,170,821 (+)Ensemblmm10GRCm38
GRCm38.p6 Ensembl834,154,563 - 34,170,845 (+)Ensemblmm10GRCm38
MGSCv37835,217,617 - 35,233,901 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36835,623,105 - 35,639,201 (+)NCBIMGSCv36mm8
Celera836,773,695 - 36,789,748 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.9NCBI
Saraf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554636,550,123 - 6,567,424 (-)Ensembl
ChiLan1.0NW_0049554636,549,495 - 6,567,589 (-)NCBIChiLan1.0ChiLan1.0
SARAF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2748,624,506 - 48,644,685 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1824,339,941 - 24,360,144 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0829,364,851 - 29,384,967 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1826,555,763 - 26,575,491 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl826,555,763 - 26,575,491 (-)EnsemblpanPan2panpan1.1
SARAF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11634,194,880 - 34,213,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1634,194,354 - 34,210,444 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1634,657,358 - 34,675,821 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01636,224,586 - 36,243,066 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1636,224,189 - 36,240,915 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11634,322,885 - 34,341,535 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,891,724 - 34,910,165 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01635,012,186 - 35,030,641 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Saraf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494345,020,723 - 45,039,873 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936573102,417 - 122,883 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936573102,554 - 121,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SARAF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1554,933,985 - 54,953,067 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11554,933,990 - 54,953,086 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21562,330,474 - 62,349,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SARAF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,166,906 - 28,186,904 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,167,708 - 28,187,156 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605213,919,690 - 13,939,704 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Saraf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248396,691,628 - 6,739,474 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248396,690,842 - 6,739,779 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Saraf
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11352,856,651 - 52,875,092 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Saraf
224 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:312
Count of miRNA genes:187
Interacting mature miRNAs:228
Transcripts:ENSRNOT00000016792
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016792   ⟹   ENSRNOP00000016792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,720,418 - 64,738,653 (-)Ensembl
mRatBN7.2 Ensembl1658,017,231 - 58,035,513 (-)Ensembl
Rnor_6.0 Ensembl1661,735,181 - 61,753,476 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101933   ⟹   ENSRNOP00000096188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1664,721,370 - 64,738,653 (-)Ensembl
mRatBN7.2 Ensembl1658,018,197 - 58,035,545 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116578   ⟹   ENSRNOP00000077679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,017,241 - 58,027,515 (-)Ensembl
RefSeq Acc Id: NM_001004213   ⟹   NP_001004213
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81664,720,404 - 64,738,653 (-)NCBI
mRatBN7.21658,017,231 - 58,035,481 (-)NCBI
Rnor_6.01661,735,189 - 61,753,438 (-)NCBI
Rnor_5.01661,400,974 - 61,419,223 (-)NCBI
RGSC_v3.41661,744,563 - 61,762,812 (-)RGD
Celera1656,055,407 - 56,073,656 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001004213 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF67391 (Get FASTA)   NCBI Sequence Viewer  
  AAH78979 (Get FASTA)   NCBI Sequence Viewer  
  EDM09179 (Get FASTA)   NCBI Sequence Viewer  
  EDM09180 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016792
GenBank Protein Q6AYN2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001004213   ⟸   NM_001004213
- Peptide Label: precursor
- UniProtKB: Q6AYN2 (UniProtKB/Swiss-Prot),   A6IVP3 (UniProtKB/TrEMBL),   A0A8L2Q907 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016792   ⟸   ENSRNOT00000016792
Ensembl Acc Id: ENSRNOP00000096188   ⟸   ENSRNOT00000101933
Ensembl Acc Id: ENSRNOP00000077679   ⟸   ENSRNOT00000116578

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P37200-F1-model_v2 AlphaFold P37200 1-72 view protein structure
AF-Q6AYN2-F1-model_v2 AlphaFold Q6AYN2 1-334 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700136
Promoter ID:EPDNEW_R10660
Type:initiation region
Name:Saraf_1
Description:store-operated calcium entry-associated regulatory factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01661,753,485 - 61,753,545EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303011 AgrOrtholog
BioCyc Gene G2FUF-11141 BioCyc
Ensembl Genes ENSRNOG00000012329 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016792 ENTREZGENE
IMAGE_CLONE IMAGE:7112025 IMAGE-MGC_LOAD
InterPro SARAF UniProtKB/Swiss-Prot
KEGG Report rno:290796 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93866 IMAGE-MGC_LOAD
NCBI Gene 290796 ENTREZGENE
PANTHER PTHR15929 UniProtKB/Swiss-Prot
  STORE-OPERATED CALCIUM ENTRY-ASSOCIATED REGULATORY FACTOR UniProtKB/Swiss-Prot
Pfam SARAF UniProtKB/Swiss-Prot
PhenoGen Saraf PhenoGen
RatGTEx ENSRNOG00000012329 RatGTEx
UniProt A0A8I6AUR3_RAT UniProtKB/TrEMBL
  A0A8L2Q907 ENTREZGENE, UniProtKB/TrEMBL
  A6IVP3 ENTREZGENE, UniProtKB/TrEMBL
  ARRE_RAT UniProtKB/Swiss-Prot
  Q6AYN2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-10 Saraf  store-operated calcium entry-associated regulatory factor  Tmem66  transmembrane protein 66  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Tmem66  transmembrane protein 66  LOC246218  arrestin-E  Data merged from RGD:708498 1643240 APPROVED
2006-03-30 Tmem66  transmembrane protein 66  MGC93866  similar to hypothetical protein MGC8721  Symbol and Name updated 1299863 APPROVED
2005-10-12 LOC246218        Symbol and Name status set to provisional 70820 PROVISIONAL
2005-02-14 MGC93866  similar to hypothetical protein MGC8721      Symbol and Name status set to provisional 70820 PROVISIONAL