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Gene: St6galnac4 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4) Rattus norvegicus

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Symbol:

St6galnac4

Name:

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4

RGD ID:

1303005

Description:

Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to be located in Golgi membrane. Orthologous to human ST6GALNAC4 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha-2,6-sialyltransferase ST6GalNAc IV; alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase; siat7D; ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4; ST6 GalNAc alpha-2,6-sialyltransferase 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	36,269,834 - 36,282,971 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	36,269,878 - 36,282,971 (+)	Ensembl				GRCr8
mRatBN7.2	3	15,872,230 - 15,885,250 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,872,532 - 15,885,243 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,941,178 - 18,953,898 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,526,185 - 27,538,908 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,776,927 - 25,789,990 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	11,607,103 - 11,619,595 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,607,225 - 11,619,593 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	16,954,075 - 16,966,295 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	3	10,612,107 - 10,625,126 (+)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2-bromohexadecanoic acid (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP)

antimony(0) (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate (ISO)

fentin chloride (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

indometacin (ISO)

isotretinoin (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

monosodium L-glutamate (ISO)

nickel dichloride (ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

tert-butyl hydroperoxide (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triclosan (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glycoprotein biosynthetic process (IEA)

lipid metabolic process (IEA)

Cellular Component

Golgi membrane (IEA)

Molecular Function

glycosyltransferase activity (IEA)

sialyltransferase activity (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ganglioside metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:15843597

Genomics

Comparative Map Data

St6galnac4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	36,269,834 - 36,282,971 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	36,269,878 - 36,282,971 (+)	Ensembl				GRCr8
mRatBN7.2	3	15,872,230 - 15,885,250 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	15,872,532 - 15,885,243 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	18,941,178 - 18,953,898 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	27,526,185 - 27,538,908 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	25,776,927 - 25,789,990 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	11,607,103 - 11,619,595 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	11,607,225 - 11,619,593 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	16,954,075 - 16,966,295 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	3	10,612,107 - 10,625,126 (+)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

ST6GALNAC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	127,907,886 - 127,917,041 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	127,907,876 - 127,917,055 (-)	Ensembl			hg38	GRCh38
GRCh37	9	130,670,165 - 130,679,320 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	129,709,986 - 129,719,126 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	127,749,719 - 127,758,855	NCBI
Celera	9	101,321,386 - 101,330,529 (-)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	100,287,366 - 100,296,243 (-)	NCBI		HuRef
CHM1_1	9	130,822,457 - 130,831,598 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	140,115,658 - 140,124,816 (-)	NCBI		T2T-CHM13v2.0

St6galnac4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	32,477,100 - 32,489,710 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	32,477,107 - 32,489,710 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	32,587,078 - 32,599,696 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	32,587,095 - 32,599,698 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	32,443,010 - 32,456,002 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	32,409,499 - 32,422,491 (+)	NCBI		MGSCv36	mm8
Celera	2	32,293,344 - 32,307,161 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	22.09	NCBI

St6galnac4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	756,747 - 764,897 (+)	Ensembl
ChiLan1.0	NW_004955419	756,768 - 764,897 (+)	NCBI	ChiLan1.0	ChiLan1.0

ST6GALNAC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	11,436,583 - 11,445,760 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	11,438,931 - 11,448,108 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	99,027,846 - 99,037,025 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	127,699,013 - 127,708,515 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	127,699,013 - 127,708,515 (-)	Ensembl			panPan2	panpan1.1

ST6GALNAC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	55,499,100 - 55,513,562 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	55,504,639 - 55,513,174 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	54,698,143 - 54,707,667 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	56,426,103 - 56,435,630 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	56,426,138 - 56,435,625 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	55,186,079 - 55,195,597 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	55,500,793 - 55,510,325 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	55,592,052 - 55,601,569 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

St6galnac4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	195,773,467 - 195,782,736 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	15,541,735 - 15,551,305 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	15,541,994 - 15,551,245 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ST6GALNAC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	268,391,855 - 268,402,407 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	268,391,851 - 268,402,449 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	302,314,296 - 302,324,794 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ST6GALNAC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	10,205,665 - 10,215,180 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	10,205,705 - 10,214,688 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	6,003,560 - 6,013,077 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

St6galnac4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	7,652,881 - 7,662,382 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	7,652,907 - 7,660,858 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

St6galnac4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	3,043,653 - 3,056,138 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in St6galnac4
114 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	122
Count of miRNA genes:	80
Interacting mature miRNAs:	84
Transcripts:	ENSRNOT00000072685, ENSRNOT00000072894
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH127457

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,884,865 - 15,885,080 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,619,211 - 11,619,425	NCBI	Rnor6.0
Rnor_5.0	3	16,965,911 - 16,966,125	UniSTS	Rnor5.0
Celera	3	10,624,742 - 10,624,956	UniSTS
RH 3.4 Map	3	67.2	UniSTS

RH144018

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	3	10,608,652 - 10,608,803	UniSTS
RH 3.4 Map	3	72.4	UniSTS

AA997843

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	15,881,848 - 15,881,952 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	11,616,203 - 11,616,306	NCBI	Rnor6.0
Rnor_5.0	3	16,962,903 - 16,963,006	UniSTS	Rnor5.0
Celera	3	10,621,725 - 10,621,828	UniSTS
RH 3.4 Map	3	65.0	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001399379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJ646871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072685 ⟹ ENSRNOP00000065708

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	36,269,878 - 36,282,971 (+)	Ensembl
mRatBN7.2 Ensembl	3	15,872,537 - 15,885,241 (+)	Ensembl
Rnor_6.0 Ensembl	3	11,607,225 - 11,619,593 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119989 ⟹ ENSRNOP00000092668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	15,872,532 - 15,885,243 (+)	Ensembl

RefSeq Acc Id:

NM_001399379 ⟹ NP_001386308

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,243 - 36,282,971 (+)	NCBI
mRatBN7.2	3	15,872,519 - 15,885,250 (+)	NCBI

RefSeq Acc Id:

NM_001399380 ⟹ NP_001386309

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,243 - 36,282,971 (+)	NCBI
mRatBN7.2	3	15,872,519 - 15,885,250 (+)	NCBI

RefSeq Acc Id:

XM_008761787 ⟹ XP_008760009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,209 - 36,282,971 (+)	NCBI
mRatBN7.2	3	15,872,230 - 15,885,243 (+)	NCBI
Rnor_6.0	3	11,607,737 - 11,617,851 (+)	NCBI

Sequence:

show sequence

TCATATTCTGGGACCAGCTTCGAGCCTTTCTCATCCCAAGCTCTGGAGACAGCAGCCTCCAGAC
TGCTGAGTGCAGAGACAGCATGAAGGCCCGGCCGCTTACCCGAGAACTGTGCCACAGCTGTGCG
GTGGTGTCCAGCTCTGGCCAGATGCTGGGTTCGGGCCTGGGTGCTCAGATCGATGGTGCGGAGT
GCGTGCTCCGCATGAACCAGGCACCCACTGTGGGCTTTGAGGAGGACGTGGGCCAGCGCAGCAC
TCTGCGCGTGATCTCGCACACGAGTGTGCCGTTACTGCTGCGTAACTACTCACACTATTTCCAG
CATGCCCGAGACACGCTCTACGTGGTGTGGGGCCAGGGCAGGCACATGGACCGGATGCTGGGCG
GCCGCACCTACCGCACATTGCTTCAGCTCACCAGAATGTACCCAGGCCTGCAAGTGTACACCTT
CACTGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAAGATGAGACGGGCAAGAACCGGAGA
CAATCAGGCTCCTTCCTTAGCACCGGTTGGTTCACCATGATTCTGGCCCTGGAGCTGTGCGAGG
AGATCGTGGTCTACGGGATGGTCAGTGATAGCTACTGCAGTGAGAAGAGTCCTCGCTCCGTGCC
CTACCACTACTTTGAGAAGGGCAGGCTGGATGAGTGTCAGATGTACCGTTTGCACGAGCAGGCT
CCGAGGAGCGCCCATCGCTTTATCACCGAGAAGGCTGTGTTCTCCCGCTGGGCCAAGAAGCGGC
CCATCGTGTTCGCCCACCCGTCCTGGAAGGCCAAGTAGTTCCTGTTGCCAGTGACCACCAGGCC
TGTGACCCATTCCAGGCCAGCTCGCTCCAGTATAAACATTTAT

hide sequence

RefSeq Acc Id:

XM_017592115 ⟹ XP_017447604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,204 - 36,282,971 (+)	NCBI
mRatBN7.2	3	15,872,230 - 15,885,243 (+)	NCBI
Rnor_6.0	3	11,607,103 - 11,617,851 (+)	NCBI

Sequence:

show sequence

CGTCGAGACCTCGCCCCCAGCCCGGAGGTCTCTGAGACAGCCACGCACCGCTCGCCGCCACTGC
GCAGGCCCCGCCTCCTGAGCGCAAAGCCTCCGCCCCTCTCGGAGGCCCCTCCCACGCCCCCGGC
GGAGCTGCTCCAGCTTCCAGGCTTCAGAAGCTGCGGCCGCAGGACCGCCTCCTACCCGGGGCCG
GATTCCGGCCCCTCTGGCCAGGCCCACTGGACATGGAGCTCCGACCAGCTTTCCCTCATATTCT
GGGACCAGCTTCGAGCCTTTCTCATCCCAAGCTCTGGAGACAGCAGCCTCCAGACTGCTGAGTG
CAGAGACAGCATGAAGGCCCGGGGCCGCCTTCTGCTCCTCATACTATGCTCCCTGACACTCTCC
GCTCTCTATGTCTTCCTGTGTTGCTGGGCCTGCCTGCCCCTCTGCCTGGCAACCTGCCTGGACC
CCCACCTCCCTGCGCCCCCCAGATCCACTGTGCCAGGGCCCCTGCACTTCAGGGGCTACAGCAG
CGTGCCAGATGGGAAGCCGCTTACCCGAGAACTGTGCCACAGCTGTGCGGTGGTGTCCAGCTCT
GGCCAGATGCTGGGTTCGGGCCTGGGTGCTCAGATCGATGGTGCGGAGTGCGTGCTCCGCATGA
ACCAGGCACCCACTGTGGGCTTTGAGGAGGACGTGGGCCAGCGCAGCACTCTGCGCGTGATCTC
GCACACGAGTGTGCCGTTACTGCTGCGTAACTACTCACACTATTTCCAGCATGCCCGAGACACG
CTCTACGTGGTGTGGGGCCAGGGCAGGCACATGGACCGGATGCTGGGCGGCCGCACCTACCGCA
CATTGCTTCAGCTCACCAGAATGTACCCAGGCCTGCAAGTGTACACCTTCACTGAGCGCATGAT
GGCCTACTGCGACCAGATCTTCCAAGATGAGACGGGCAAGAACCGGAGACAATCAGGCTCCTTC
CTTAGCACCGGTTGGTTCACCATGATTCTGGCCCTGGAGCTGTGCGAGGAGATCGTGGTCTACG
GGATGGTCAGTGATAGCTACTGCAGTGAGAAGAGTCCTCGCTCCGTGCCCTACCACTACTTTGA
GAAGGGCAGGCTGGATGAGTGTCAGATGTACCGTTTGCACGAGCAGGCTCCGAGGAGCGCCCAT
CGCTTTATCACCGAGAAGGCTGTGTTCTCCCGCTGGGCCAAGAAGCGGCCCATCGTGTTCGCCC
ACCCGTCCTGGAAGGCCAAGTAGTTCCTGTTGCCAGTGACCACCAGGCCTGTGACCCATTCCAG
GCCAGCTCGCTCCAGTATAAACATTTAT

hide sequence

RefSeq Acc Id:

XM_039106181 ⟹ XP_038962109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,202 - 36,282,971 (+)	NCBI
mRatBN7.2	3	15,872,230 - 15,885,243 (+)	NCBI

RefSeq Acc Id:

XM_063284313 ⟹ XP_063140383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,206 - 36,282,971 (+)	NCBI

RefSeq Acc Id:

XM_063284314 ⟹ XP_063140384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,210 - 36,282,971 (+)	NCBI

RefSeq Acc Id:

XM_063284315 ⟹ XP_063140385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,270,203 - 36,282,971 (+)	NCBI

RefSeq Acc Id:

XM_063284316 ⟹ XP_063140386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	36,269,834 - 36,273,132 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001386308	(Get FASTA)	NCBI Sequence Viewer
	NP_001386309	(Get FASTA)	NCBI Sequence Viewer
	XP_008760009	(Get FASTA)	NCBI Sequence Viewer
	XP_017447604	(Get FASTA)	NCBI Sequence Viewer
	XP_038962109	(Get FASTA)	NCBI Sequence Viewer
	XP_063140383	(Get FASTA)	NCBI Sequence Viewer
	XP_063140384	(Get FASTA)	NCBI Sequence Viewer
	XP_063140385	(Get FASTA)	NCBI Sequence Viewer
	XP_063140386	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAG26700	(Get FASTA)	NCBI Sequence Viewer
	EDL93227	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000065708.4

RefSeq Acc Id:

XP_008760009 ⟸ XM_008761787

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKARPLTRELCHSCAVVSSSGQMLGSGLGAQIDGAECVLRMNQAPTVGFEEDVGQRSTLRVISH
TSVPLLLRNYSHYFQHARDTLYVVWGQGRHMDRMLGGRTYRTLLQLTRMYPGLQVYTFTERMMA
YCDQIFQDETGKNRRQSGSFLSTGWFTMILALELCEEIVVYGMVSDSYCSEKSPRSVPYHYFEK
GRLDECQMYRLHEQAPRSAHRFITEKAVFSRWAKKRPIVFAHPSWKAK

hide sequence

RefSeq Acc Id:	XP_017447604 ⟸ XM_017592115
- Peptide Label:	isoform X1
- UniProtKB:	M0R8B3 (UniProtKB/TrEMBL), Q6ZXZ0 (UniProtKB/TrEMBL), A0A8J8XJY2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKARGRLLLLILCSLTLSALYVFLCCWACLPLCLATCLDPHLPAPPRSTVPGPLHFRGYSSVPD GKPLTRELCHSCAVVSSSGQMLGSGLGAQIDGAECVLRMNQAPTVGFEEDVGQRSTLRVISHTS VPLLLRNYSHYFQHARDTLYVVWGQGRHMDRMLGGRTYRTLLQLTRMYPGLQVYTFTERMMAYC DQIFQDETGKNRRQSGSFLSTGWFTMILALELCEEIVVYGMVSDSYCSEKSPRSVPYHYFEKGR LDECQMYRLHEQAPRSAHRFITEKAVFSRWAKKRPIVFAHPSWKAK hide sequence

Ensembl Acc Id:

ENSRNOP00000065708 ⟸ ENSRNOT00000072685

RefSeq Acc Id:	XP_038962109 ⟸ XM_039106181
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000092668 ⟸ ENSRNOT00000119989

RefSeq Acc Id:	NP_001386308 ⟸ NM_001399379
- UniProtKB:	M0R8B3 (UniProtKB/TrEMBL), Q6ZXZ0 (UniProtKB/TrEMBL), A0A8J8XJY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386309 ⟸ NM_001399380
- UniProtKB:	M0R8B3 (UniProtKB/TrEMBL), Q6ZXZ0 (UniProtKB/TrEMBL), A0A8J8XJY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140386 ⟸ XM_063284316
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140385 ⟸ XM_063284315
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140383 ⟸ XM_063284313
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140384 ⟸ XM_063284314
- Peptide Label:	isoform X4

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6ZXZ0-F1-model_v2	AlphaFold	Q6ZXZ0	1-302	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691993

Promoter ID:

EPDNEW_R2514

Type:

initiation region

Name:

St6galnac4_1

Description:

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	11,607,242 - 11,607,302	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303005	AgrOrtholog
BioCyc Gene	G2FUF-50131	BioCyc
Ensembl Genes	ENSRNOG00000048870	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000072685.5	UniProtKB/TrEMBL
Gene3D-CATH	3.90.1480.20	UniProtKB/TrEMBL
InterPro	Glyco_trans_29	UniProtKB/TrEMBL
	GT29-like_sf	UniProtKB/TrEMBL
NCBI Gene	407764	ENTREZGENE
PANTHER	ALPHA-N-ACETYL-NEURAMINYL-2,3-BETA-GALACTOSYL-1,3-N-ACETYL-GALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE	UniProtKB/TrEMBL
	PTHR45906	UniProtKB/TrEMBL
Pfam	Glyco_transf_29	UniProtKB/TrEMBL
PhenoGen	St6galnac4	PhenoGen
RatGTEx	ENSRNOG00000048870	RatGTEx
UniProt	A0A8J8XJY2	ENTREZGENE, UniProtKB/TrEMBL
	M0R8B3	ENTREZGENE
	Q6ZXZ0	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	M0R8B3	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-05	St6galnac4	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	St6galnac4	ST6 GalNAc alpha-2,6-sialyltransferase 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-04-27	St6galnac4	ST6 GalNAc alpha-2,6-sialyltransferase 4	St6galnac4	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-07	St6galnac4	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	siat7D	alpha-2,6-sialyltransferase ST6GalNAc IV	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-02-14	siat7D	alpha-2,6-sialyltransferase ST6GalNAc IV			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)