Tacc2 (transforming, acidic coiled-coil containing protein 2) - Rat Genome Database

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Pathways
Gene: Tacc2 (transforming, acidic coiled-coil containing protein 2) Rattus norvegicus
Analyze
Symbol: Tacc2
Name: transforming, acidic coiled-coil containing protein 2
RGD ID: 1303004
Description: Predicted to enable nuclear receptor binding activity and protein domain specific binding activity. Predicted to be involved in cerebral cortex development; microtubule cytoskeleton organization; and nuclear migration. Predicted to act upstream of or within astral microtubule organization; nervous system development; and regulation of microtubule-based process. Predicted to be located in several cellular components, including cytoskeleton; cytosol; and nucleoplasm. Predicted to be active in cytoplasm. Orthologous to human TACC2 (transforming acidic coiled-coil containing protein 2); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: transforming acidic coiled coil 2; transforming acidic coiled-coil containing protein 2 variant 3; transforming acidic coiled-coil-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,546,428 - 194,758,152 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,569,650 - 194,758,152 (+)EnsemblGRCr8
mRatBN7.21185,139,223 - 185,327,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1185,116,111 - 185,327,881 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1193,489,634 - 193,678,121 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01200,664,540 - 200,857,259 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01193,336,312 - 193,529,026 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01201,140,264 - 201,329,612 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,055,644 - 201,329,622 (+)Ensemblrn6Rnor6.0
Rnor_5.01208,172,319 - 208,360,445 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41189,894,937 - 190,085,789 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,754,424 - 182,942,336 (+)NCBICelera
RGSC_v3.11190,044,817 - 190,235,670 (+)NCBI
Cytogenetic Map1q37NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aldrin  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroethene  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dicrotophos  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
isoprenaline  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
melphalan  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
tributylstannane  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoskeleton  (IEA)
cytosol  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Structure-function evolution of the transforming acidic coiled coil genes revealed by analysis of phylogenetically diverse organisms. Still IH, etal., BMC Evol Biol 2004 Jun 18;4(1):16.
Additional References at PubMed
PMID:17920017   PMID:24700488  


Genomics

Comparative Map Data
Tacc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,546,428 - 194,758,152 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,569,650 - 194,758,152 (+)EnsemblGRCr8
mRatBN7.21185,139,223 - 185,327,881 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1185,116,111 - 185,327,881 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1193,489,634 - 193,678,121 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01200,664,540 - 200,857,259 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01193,336,312 - 193,529,026 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01201,140,264 - 201,329,612 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1201,055,644 - 201,329,622 (+)Ensemblrn6Rnor6.0
Rnor_5.01208,172,319 - 208,360,445 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41189,894,937 - 190,085,789 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,754,424 - 182,942,336 (+)NCBICelera
RGSC_v3.11190,044,817 - 190,235,670 (+)NCBI
Cytogenetic Map1q37NCBI
TACC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810121,989,163 - 122,254,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10121,989,163 - 122,254,545 (+)Ensemblhg38GRCh38
GRCh3710123,748,678 - 124,014,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610123,738,679 - 124,004,047 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3410123,738,678 - 124,004,045NCBI
Celera10117,480,656 - 117,746,439 (+)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10117,379,396 - 117,644,911 (+)NCBIHuRef
CHM1_110124,033,418 - 124,298,674 (+)NCBICHM1_1
T2T-CHM13v2.010122,885,504 - 123,150,842 (+)NCBIT2T-CHM13v2.0
Tacc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397130,154,735 - 130,369,435 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7130,179,168 - 130,366,515 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387130,553,009 - 130,767,705 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7130,577,438 - 130,764,785 (+)Ensemblmm10GRCm38
MGSCv377137,720,998 - 137,908,298 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367130,368,632 - 130,555,930 (+)NCBIMGSCv36mm8
Celera7130,394,504 - 130,580,247 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map773.19NCBI
Tacc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955477338,887 - 552,360 (+)Ensembl
ChiLan1.0NW_004955477338,990 - 552,100 (+)NCBIChiLan1.0ChiLan1.0
TACC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28133,911,867 - 134,112,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110133,888,632 - 134,118,241 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010118,564,005 - 118,826,292 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110121,976,980 - 122,237,505 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10121,976,980 - 122,237,505 (+)EnsemblpanPan2panpan1.1
TACC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12831,735,673 - 31,943,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2831,735,792 - 31,942,927 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2831,826,123 - 32,018,612 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02832,272,610 - 32,479,210 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2832,272,677 - 32,479,207 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12831,804,510 - 32,011,531 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02831,825,505 - 32,032,594 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02832,043,943 - 32,237,190 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tacc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721314,461,021 - 14,649,020 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648610,930,601 - 11,100,294 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648610,912,307 - 11,100,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14131,642,925 - 131,849,817 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114131,770,023 - 131,849,820 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,050,761 - 143,131,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TACC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19114,781,581 - 114,987,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604876,050,915 - 76,285,637 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tacc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473724,471,943 - 24,649,007 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473724,472,104 - 24,685,969 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tacc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1271,320,382 - 71,511,691 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tacc2
1176 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:570
Count of miRNA genes:176
Interacting mature miRNAs:205
Transcripts:ENSRNOT00000047161, ENSRNOT00000054937
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1153679879198679879Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1177339686222339686Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1181059071226059071Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1181059071226059071Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1153679879205813246Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1182039247227039247Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1183564652228564652Rat
8694166Bw147Body weight QTL 1476.830.001body mass (VT:0001259)body weight gain (CMO:0000420)1153788989198788989Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1193964073238964073Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1181059071226059071Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1165278545210278545Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1181059071226059071Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1161077990206077990Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1127329268206393015Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1168063662213063662Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1193400541238400541Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1159894717207261263Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1163992710208992710Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1182535316227535316Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1181059071226059071Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1155359438194575574Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1181059071226059071Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1162753891207753891Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1180739993225739993Rat
61378Bp43Blood pressure QTL 4322.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1191177449205813246Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1191190115223964326Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1172718770228180370Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1175967553200707874Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1178547286206690557Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1192995199237995199Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1185979875230979875Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1193400541238400541Rat
1576310Schws2Schwannoma susceptibility QTL 20.029nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1153788989198788989Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1165707719210707719Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1173363824227535316Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1132966869206393015Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1191260175236260175Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2325727Pia41Pristane induced arthritis QTL 41joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1188241285233241285Rat
2325725Eae31Experimental allergic encephalomyelitis QTL 31nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1188241285197807511Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat
7411599Foco11Food consumption QTL 1118.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1153788989198788989Rat
631670Iddm10Insulin dependent diabetes mellitus QTL 101.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1183564652205813246Rat

Markers in Region
D1Rat130  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81194,575,422 - 194,575,574 (+)Marker Load Pipeline
mRatBN7.21185,145,134 - 185,145,286 (+)MAPPERmRatBN7.2
Rnor_6.01201,146,802 - 201,146,953NCBIRnor6.0
Rnor_5.01208,178,542 - 208,178,693UniSTSRnor5.0
RGSC_v3.41189,900,686 - 189,900,838RGDRGSC3.4
RGSC_v3.41189,900,687 - 189,900,838UniSTSRGSC3.4
Celera1182,760,164 - 182,760,321UniSTS
RGSC_v3.11190,050,568 - 190,050,719RGD
RH 3.4 Map11420.3RGD
RH 3.4 Map11420.3UniSTS
RH 2.0 Map11000.0RGD
SHRSP x BN Map194.7699RGD
Cytogenetic Map1q37UniSTS
D1Got173  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21185,151,421 - 185,151,602 (+)MAPPERmRatBN7.2
Rnor_6.01201,153,088 - 201,153,268NCBIRnor6.0
Rnor_5.01208,184,679 - 208,184,859UniSTSRnor5.0
RGSC_v3.41189,906,759 - 189,906,940RGDRGSC3.4
RGSC_v3.41189,906,760 - 189,906,940UniSTSRGSC3.4
Celera1182,766,399 - 182,766,561UniSTS
RGSC_v3.11190,056,641 - 190,056,821RGD
RH 3.4 Map11433.79UniSTS
RH 3.4 Map11433.79RGD
RH 2.0 Map11009.9RGD
Cytogenetic Map1q37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001004418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ143743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047161   ⟹   ENSRNOP00000042296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,569,650 - 194,758,152 (+)Ensembl
mRatBN7.2 Ensembl1185,139,385 - 185,327,881 (+)Ensembl
Rnor_6.0 Ensembl1201,055,644 - 201,329,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000054937   ⟹   ENSRNOP00000051820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,569,650 - 194,758,152 (+)Ensembl
mRatBN7.2 Ensembl1185,162,430 - 185,327,881 (+)Ensembl
Rnor_6.0 Ensembl1201,055,644 - 201,329,612 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077908   ⟹   ENSRNOP00000073346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,584,214 - 194,758,151 (+)Ensembl
mRatBN7.2 Ensembl1185,153,688 - 185,327,881 (+)Ensembl
Rnor_6.0 Ensembl1201,117,630 - 201,329,622 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090143   ⟹   ENSRNOP00000068677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,685,161 - 194,758,152 (+)Ensembl
mRatBN7.2 Ensembl1185,255,171 - 185,327,440 (+)Ensembl
Rnor_6.0 Ensembl1201,256,910 - 201,329,171 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096415   ⟹   ENSRNOP00000095666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,569,650 - 194,758,152 (+)Ensembl
mRatBN7.2 Ensembl1185,116,111 - 185,327,881 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100208   ⟹   ENSRNOP00000078070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,637,742 - 194,753,518 (+)Ensembl
mRatBN7.2 Ensembl1185,139,385 - 185,323,245 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103884   ⟹   ENSRNOP00000092850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,637,717 - 194,758,150 (+)Ensembl
mRatBN7.2 Ensembl1185,207,792 - 185,327,724 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117206   ⟹   ENSRNOP00000094748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1185,116,131 - 185,327,378 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119746   ⟹   ENSRNOP00000077927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,685,277 - 194,758,150 (+)Ensembl
mRatBN7.2 Ensembl1185,207,016 - 185,327,859 (+)Ensembl
RefSeq Acc Id: NM_001004415   ⟹   NP_001004415
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,569,650 - 194,758,152 (+)NCBI
mRatBN7.21185,139,362 - 185,327,881 (+)NCBI
Rnor_6.01201,141,053 - 201,329,612 (+)NCBI
Rnor_5.01208,172,319 - 208,360,445 (+)NCBI
RGSC_v3.41189,894,937 - 190,085,789 (+)RGD
Celera1182,754,424 - 182,942,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001004418   ⟹   NP_001004418
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,569,650 - 194,758,152 (+)NCBI
mRatBN7.21185,139,362 - 185,327,881 (+)NCBI
Rnor_6.01201,141,053 - 201,329,612 (+)NCBI
Rnor_5.01208,172,319 - 208,360,445 (+)NCBI
RGSC_v3.41189,894,937 - 190,085,789 (+)RGD
Celera1182,754,424 - 182,942,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001415936   ⟹   NP_001402865
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,685,161 - 194,758,152 (+)NCBI
mRatBN7.21185,254,883 - 185,327,881 (+)NCBI
RefSeq Acc Id: NM_001415937   ⟹   NP_001402866
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,588,275 - 194,758,152 (+)NCBI
mRatBN7.21185,157,987 - 185,327,881 (+)NCBI
RefSeq Acc Id: XM_008759883   ⟹   XP_008758105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,933 - 194,758,152 (+)NCBI
mRatBN7.21185,254,637 - 185,327,881 (+)NCBI
Rnor_6.01201,256,284 - 201,329,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589222   ⟹   XP_017444711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,927 - 194,758,152 (+)NCBI
mRatBN7.21185,254,633 - 185,327,881 (+)NCBI
Rnor_6.01201,256,284 - 201,329,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589223   ⟹   XP_017444712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,927 - 194,758,152 (+)NCBI
mRatBN7.21185,254,633 - 185,327,881 (+)NCBI
Rnor_6.01201,256,284 - 201,329,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039078550   ⟹   XP_038934478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
mRatBN7.21185,139,223 - 185,327,881 (+)NCBI
RefSeq Acc Id: XM_039078566   ⟹   XP_038934494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,935 - 194,758,152 (+)NCBI
mRatBN7.21185,254,638 - 185,327,881 (+)NCBI
RefSeq Acc Id: XM_063263464   ⟹   XP_063119534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263466   ⟹   XP_063119536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263469   ⟹   XP_063119539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263471   ⟹   XP_063119541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263474   ⟹   XP_063119544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263476   ⟹   XP_063119546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263480   ⟹   XP_063119550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263484   ⟹   XP_063119554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263487   ⟹   XP_063119557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263488   ⟹   XP_063119558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263499   ⟹   XP_063119569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,428 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263502   ⟹   XP_063119572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,589,489 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263505   ⟹   XP_063119575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263507   ⟹   XP_063119577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,439 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263513   ⟹   XP_063119583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263516   ⟹   XP_063119586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,593,392 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263519   ⟹   XP_063119589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,588,277 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263527   ⟹   XP_063119597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,428 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263532   ⟹   XP_063119602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,439 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263537   ⟹   XP_063119607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,211 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263543   ⟹   XP_063119613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,927 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263550   ⟹   XP_063119620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,933 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263555   ⟹   XP_063119625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,926 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263560   ⟹   XP_063119630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,932 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263562   ⟹   XP_063119632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,546,454 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263565   ⟹   XP_063119635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263569   ⟹   XP_063119639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,144 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263577   ⟹   XP_063119647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,222 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263589   ⟹   XP_063119659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,928 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263591   ⟹   XP_063119661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,934 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263592   ⟹   XP_063119662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263597   ⟹   XP_063119667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,707,120 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263606   ⟹   XP_063119676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,684,929 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263607   ⟹   XP_063119677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263611   ⟹   XP_063119681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263612   ⟹   XP_063119682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,638,070 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263613   ⟹   XP_063119683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,637,338 - 194,758,152 (+)NCBI
RefSeq Acc Id: XM_063263617   ⟹   XP_063119687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,569,511 - 194,758,152 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001004415 (Get FASTA)   NCBI Sequence Viewer  
  NP_001004418 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402865 (Get FASTA)   NCBI Sequence Viewer  
  NP_001402866 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758105 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444711 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444712 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934478 (Get FASTA)   NCBI Sequence Viewer  
  XP_038934494 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119534 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119536 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119539 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119541 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119544 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119546 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119550 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119554 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119557 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119558 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119569 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119572 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119575 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119577 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119583 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119586 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119589 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119602 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119620 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119625 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119632 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119635 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119639 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119647 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119659 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119661 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119662 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119667 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119676 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119677 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119681 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119682 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119683 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119687 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHV83439 (Get FASTA)   NCBI Sequence Viewer  
  EDM17141 (Get FASTA)   NCBI Sequence Viewer  
  EDM17142 (Get FASTA)   NCBI Sequence Viewer  
  EDM17143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042296
  ENSRNOP00000042296.3
  ENSRNOP00000051820
  ENSRNOP00000051820.4
  ENSRNOP00000068677
  ENSRNOP00000068677.2
  ENSRNOP00000073346
  ENSRNOP00000073346.3
  ENSRNOP00000077927
  ENSRNOP00000077927.2
  ENSRNOP00000078070
  ENSRNOP00000078070.1
  ENSRNOP00000092850
  ENSRNOP00000092850.1
  ENSRNOP00000095666
  ENSRNOP00000095666.2
RefSeq Acc Id: NP_001004415   ⟸   NM_001004415
- Peptide Label: isoform 1
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001004418   ⟸   NM_001004418
- Peptide Label: isoform 2
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758105   ⟸   XM_008759883
- Peptide Label: isoform X32
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444711   ⟸   XM_017589222
- Peptide Label: isoform X25
- UniProtKB: A0A0G2JTE3 (UniProtKB/TrEMBL),   D4A858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444712   ⟸   XM_017589223
- Peptide Label: isoform X30
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068677   ⟸   ENSRNOT00000090143
Ensembl Acc Id: ENSRNOP00000073346   ⟸   ENSRNOT00000077908
Ensembl Acc Id: ENSRNOP00000042296   ⟸   ENSRNOT00000047161
Ensembl Acc Id: ENSRNOP00000051820   ⟸   ENSRNOT00000054937
RefSeq Acc Id: XP_038934478   ⟸   XM_039078550
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AK68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934494   ⟸   XM_039078566
- Peptide Label: isoform X37
- UniProtKB: A6IA38 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078070   ⟸   ENSRNOT00000100208
Ensembl Acc Id: ENSRNOP00000094748   ⟸   ENSRNOT00000117206
Ensembl Acc Id: ENSRNOP00000092850   ⟸   ENSRNOT00000103884
Ensembl Acc Id: ENSRNOP00000077927   ⟸   ENSRNOT00000119746
Ensembl Acc Id: ENSRNOP00000095666   ⟸   ENSRNOT00000096415
RefSeq Acc Id: NP_001402866   ⟸   NM_001415937
- Peptide Label: isoform 4
- UniProtKB: A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402865   ⟸   NM_001415936
- Peptide Label: isoform 3
- UniProtKB: X4YHC6 (UniProtKB/TrEMBL),   D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119569   ⟸   XM_063263499
- Peptide Label: isoform X12
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119597   ⟸   XM_063263527
- Peptide Label: isoform X19
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119577   ⟸   XM_063263507
- Peptide Label: isoform X15
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119602   ⟸   XM_063263532
- Peptide Label: isoform X20
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119632   ⟸   XM_063263562
- Peptide Label: isoform X27
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119687   ⟸   XM_063263617
- Peptide Label: isoform X42
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119589   ⟸   XM_063263519
- Peptide Label: isoform X18
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119572   ⟸   XM_063263502
- Peptide Label: isoform X13
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119539   ⟸   XM_063263469
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119557   ⟸   XM_063263487
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AK68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119541   ⟸   XM_063263471
- Peptide Label: isoform X4
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119550   ⟸   XM_063263480
- Peptide Label: isoform X7
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119575   ⟸   XM_063263505
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AK68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119534   ⟸   XM_063263464
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119546   ⟸   XM_063263476
- Peptide Label: isoform X6
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119554   ⟸   XM_063263484
- Peptide Label: isoform X8
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119583   ⟸   XM_063263513
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AK68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119536   ⟸   XM_063263466
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119558   ⟸   XM_063263488
- Peptide Label: isoform X10
- UniProtKB: D3ZXK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119586   ⟸   XM_063263516
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AK68 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119544   ⟸   XM_063263474
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K598 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119683   ⟸   XM_063263613
- Peptide Label: isoform X41
- UniProtKB: A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119635   ⟸   XM_063263565
- Peptide Label: isoform X28
- UniProtKB: A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119662   ⟸   XM_063263592
- Peptide Label: isoform X35
- UniProtKB: A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119677   ⟸   XM_063263607
- Peptide Label: isoform X39
- UniProtKB: A0A8I5XWM5 (UniProtKB/TrEMBL),   A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119681   ⟸   XM_063263611
- Peptide Label: isoform X40
- UniProtKB: A0A8I6AEP2 (UniProtKB/TrEMBL),   A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119682   ⟸   XM_063263612
- Peptide Label: isoform X39
- UniProtKB: A0A8I5XWM5 (UniProtKB/TrEMBL),   A0A8I5Y8E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119625   ⟸   XM_063263555
- Peptide Label: isoform X24
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119613   ⟸   XM_063263543
- Peptide Label: isoform X22
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119659   ⟸   XM_063263589
- Peptide Label: isoform X33
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119676   ⟸   XM_063263606
- Peptide Label: isoform X38
- UniProtKB: A6IA38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119630   ⟸   XM_063263560
- Peptide Label: isoform X26
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119620   ⟸   XM_063263550
- Peptide Label: isoform X23
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119661   ⟸   XM_063263591
- Peptide Label: isoform X34
- UniProtKB: A6IA38 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119667   ⟸   XM_063263597
- Peptide Label: isoform X36
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119639   ⟸   XM_063263569
- Peptide Label: isoform X29
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119607   ⟸   XM_063263537
- Peptide Label: isoform X21
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119647   ⟸   XM_063263577
- Peptide Label: isoform X31
- UniProtKB: D4A858 (UniProtKB/TrEMBL)
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303004 AgrOrtholog
BioCyc Gene G2FUF-57253 BioCyc
Ensembl Genes ENSRNOG00000020457 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047161 ENTREZGENE
  ENSRNOT00000047161.6 UniProtKB/TrEMBL
  ENSRNOT00000054937 ENTREZGENE
  ENSRNOT00000054937.7 UniProtKB/TrEMBL
  ENSRNOT00000077908 ENTREZGENE
  ENSRNOT00000077908.3 UniProtKB/TrEMBL
  ENSRNOT00000090143 ENTREZGENE
  ENSRNOT00000090143.3 UniProtKB/TrEMBL
  ENSRNOT00000096415 ENTREZGENE
  ENSRNOT00000096415.2 UniProtKB/TrEMBL
  ENSRNOT00000100208 ENTREZGENE
  ENSRNOT00000100208.2 UniProtKB/TrEMBL
  ENSRNOT00000103884 ENTREZGENE
  ENSRNOT00000103884.2 UniProtKB/TrEMBL
  ENSRNOT00000119746 ENTREZGENE
  ENSRNOT00000119746.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro Alp7/TACC UniProtKB/TrEMBL
  TACC UniProtKB/TrEMBL
NCBI Gene 309025 ENTREZGENE
PANTHER PTHR13924 UniProtKB/TrEMBL
  TRANSFORMING ACIDIC COILED-COIL-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam TACC UniProtKB/TrEMBL
PhenoGen Tacc2 PhenoGen
RatGTEx ENSRNOG00000020457 RatGTEx
UniProt A0A0G2JTE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K598 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XWM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y8E6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AEP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AK68 ENTREZGENE, UniProtKB/TrEMBL
  A6IA37_RAT UniProtKB/TrEMBL
  A6IA38 ENTREZGENE, UniProtKB/TrEMBL
  A6IA39_RAT UniProtKB/TrEMBL
  D3ZXK3 ENTREZGENE, UniProtKB/TrEMBL
  D4A858 ENTREZGENE, UniProtKB/TrEMBL
  X4YHC6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Tacc2  transforming, acidic coiled-coil containing protein 2    transforming acidic coiled coil 2  Name updated 1299863 APPROVED
2005-02-14 Tacc2  transforming acidic coiled coil 2      Symbol and Name status set to provisional 70820 PROVISIONAL