Habp2 (hyaluronan binding protein 2) - Rat Genome Database

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Gene: Habp2 (hyaluronan binding protein 2) Rattus norvegicus
Analyze
Symbol: Habp2
Name: hyaluronan binding protein 2
RGD ID: 1302979
Description: Predicted to enable serine-type endopeptidase activity. Involved in response to bleomycin. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Biomarker of pulmonary fibrosis. Human ortholog(s) of this gene implicated in papillary thyroid carcinoma and thrombophilia due to thrombin defect. Orthologous to human HABP2 (hyaluronan binding protein 2); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: factor VII-activating protease; Fsap; Habp; hyaluronan-binding protein; hyaluronan-binding protein 2; hyaluronic acid binding protein 2; PHBP; plasma hyaluronan-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81265,321,084 - 265,355,375 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1265,303,172 - 265,355,374 (+)EnsemblGRCr8
mRatBN7.21255,315,870 - 255,350,161 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1255,315,915 - 255,350,160 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1263,522,622 - 263,556,671 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01270,228,663 - 270,262,712 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01262,876,466 - 262,910,740 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,068,715 - 277,104,567 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1277,068,761 - 277,104,566 (+)Ensemblrn6Rnor6.0
Rnor_5.01284,451,912 - 284,486,018 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41262,556,446 - 262,591,500 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1251,017,452 - 251,051,641 (+)NCBICelera
RGSC_v3.11262,767,490 - 262,802,545 (+)NCBI
Cytogenetic Map1q55NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The G534E-polymorphism of the gene encoding the factor VII-activating protease is a risk factor for venous thrombosis and recurrent events. Ahmad-Nejad P, etal., Thromb Res. 2012 Sep;130(3):441-4. doi: 10.1016/j.thromres.2012.02.009. Epub 2012 Mar 14.
2. Purification and characterization of a novel hyaluronan-binding protein (PHBP) from human plasma: it has three EGF, a kringle and a serine protease domain, similar to hepatocyte growth factor activator. Choi-Miura NH, etal., J Biochem (Tokyo) 1996 Jun;119(6):1157-65.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Lac color inhibits development of rat thyroid carcinomas through targeting activation of plasma hyaluronan-binding protein. Kemmochi S, etal., Exp Biol Med (Maywood). 2012 Jun;237(6):728-38. doi: 10.1258/ebm.2012.011319. Epub 2012 Jun 19.
5. Changes in factor VII-activating protease in a bleomycin-induced lung injury rat model and its influence on human pulmonary fibroblasts in vitro. Mu E, etal., Int J Mol Med. 2010 Oct;26(4):549-55.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11217080   PMID:12477932   PMID:17562559  


Genomics

Comparative Map Data
Habp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81265,321,084 - 265,355,375 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1265,303,172 - 265,355,374 (+)EnsemblGRCr8
mRatBN7.21255,315,870 - 255,350,161 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1255,315,915 - 255,350,160 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1263,522,622 - 263,556,671 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01270,228,663 - 270,262,712 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01262,876,466 - 262,910,740 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01277,068,715 - 277,104,567 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1277,068,761 - 277,104,566 (+)Ensemblrn6Rnor6.0
Rnor_5.01284,451,912 - 284,486,018 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41262,556,446 - 262,591,500 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1251,017,452 - 251,051,641 (+)NCBICelera
RGSC_v3.11262,767,490 - 262,802,545 (+)NCBI
Cytogenetic Map1q55NCBI
HABP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810113,550,831 - 113,589,602 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10113,550,837 - 113,589,892 (+)Ensemblhg38GRCh38
GRCh3710115,310,590 - 115,349,361 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610115,302,775 - 115,339,348 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3410115,302,774 - 115,339,348NCBI
Celera10109,038,189 - 109,076,960 (+)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10108,937,907 - 108,976,483 (+)NCBIHuRef
CHM1_110115,592,554 - 115,631,328 (+)NCBICHM1_1
T2T-CHM13v2.010114,442,457 - 114,481,225 (+)NCBIT2T-CHM13v2.0
Habp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391956,275,541 - 56,309,252 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1956,275,569 - 56,309,254 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381956,287,109 - 56,320,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1956,287,137 - 56,320,822 (+)Ensemblmm10GRCm38
MGSCv371956,362,428 - 56,394,579 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361956,341,188 - 56,373,339 (+)NCBIMGSCv36mm8
MGSCv361956,317,036 - 56,350,438 (+)NCBIMGSCv36mm8
Celera1958,478,410 - 58,507,476 (+)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1951.79NCBI
Habp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543118,572,690 - 18,604,059 (+)Ensembl
ChiLan1.0NW_00495543118,572,690 - 18,604,399 (+)NCBIChiLan1.0ChiLan1.0
HABP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28125,399,722 - 125,466,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110125,405,070 - 125,471,557 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010110,146,311 - 110,182,871 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110113,580,321 - 113,616,818 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10113,580,321 - 113,616,810 (+)EnsemblpanPan2panpan1.1
HABP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12824,489,665 - 24,522,336 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2824,489,773 - 24,522,263 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2824,641,006 - 24,673,772 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02825,021,508 - 25,054,218 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2825,021,609 - 25,054,043 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12824,578,909 - 24,611,633 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02824,586,609 - 24,619,368 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02824,786,098 - 24,818,844 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Habp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721321,556,142 - 21,573,552 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364863,974,035 - 4,004,632 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364863,987,746 - 4,004,632 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HABP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14123,893,996 - 123,932,961 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114123,893,990 - 123,929,445 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214135,129,981 - 135,165,441 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HABP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19106,435,439 - 106,472,967 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9106,436,685 - 106,474,544 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604867,651,040 - 67,688,214 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Habp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473732,964,406 - 32,995,110 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473732,963,943 - 32,997,789 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Habp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1259,859,355 - 59,893,395 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:279
Count of miRNA genes:133
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000022382, ENSRNOT00000044183
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1263946994269633915Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1248619887269633915Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1257624997270518180Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1255849111270518180Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 10 61 49 81 79 59 13 59 6 208 97 4 28 34 45 20 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000022382   ⟹   ENSRNOP00000022382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1265,332,404 - 265,355,374 (+)Ensembl
mRatBN7.2 Ensembl1255,325,334 - 255,350,160 (+)Ensembl
Rnor_6.0 Ensembl1277,068,764 - 277,104,566 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000044183   ⟹   ENSRNOP00000045891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1265,321,120 - 265,355,374 (+)Ensembl
mRatBN7.2 Ensembl1255,315,915 - 255,350,159 (+)Ensembl
Rnor_6.0 Ensembl1277,068,761 - 277,104,565 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122616   ⟹   ENSRNOP00000111256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1265,321,085 - 265,355,374 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142173   ⟹   ENSRNOP00000100920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1265,303,172 - 265,355,374 (+)Ensembl
RefSeq Acc Id: NM_001001505   ⟹   NP_001001505
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,321,128 - 265,355,373 (+)NCBI
mRatBN7.21255,315,915 - 255,350,159 (+)NCBI
Rnor_6.01277,068,761 - 277,104,565 (+)NCBI
Rnor_5.01284,451,912 - 284,486,018 (+)NCBI
RGSC_v3.41262,556,446 - 262,591,500 (+)RGD
Celera1251,017,452 - 251,051,641 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231633   ⟹   XP_006231695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81265,321,084 - 265,355,375 (+)NCBI
mRatBN7.21255,315,870 - 255,350,161 (+)NCBI
Rnor_6.01277,068,717 - 277,104,567 (+)NCBI
Rnor_5.01284,451,912 - 284,486,018 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001001505 (Get FASTA)   NCBI Sequence Viewer  
  XP_006231695 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI29081 (Get FASTA)   NCBI Sequence Viewer  
  BAD19044 (Get FASTA)   NCBI Sequence Viewer  
  EDL94490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022382
GenBank Protein Q6L711 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001001505   ⟸   NM_001001505
- Peptide Label: precursor
- UniProtKB: Q6L711 (UniProtKB/Swiss-Prot),   F1M8H8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231695   ⟸   XM_006231633
- Peptide Label: isoform X1
- UniProtKB: Q6L711 (UniProtKB/Swiss-Prot),   A2VD04 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022382   ⟸   ENSRNOT00000022382
Ensembl Acc Id: ENSRNOP00000045891   ⟸   ENSRNOT00000044183
Ensembl Acc Id: ENSRNOP00000100920   ⟸   ENSRNOT00000142173
Ensembl Acc Id: ENSRNOP00000111256   ⟸   ENSRNOT00000122616
Protein Domains
EGF-like   Kringle   Peptidase S1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6L711-F1-model_v2 AlphaFold Q6L711 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691004
Promoter ID:EPDNEW_R1525
Type:initiation region
Name:Habp2_1
Description:hyaluronan binding protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01277,068,771 - 277,068,831EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302979 AgrOrtholog
BioCyc Gene G2FUF-55327 BioCyc
Ensembl Genes ENSRNOG00000016659 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022382 ENTREZGENE
Gene3D-CATH 2.40.10.10 UniProtKB/Swiss-Prot
  2.40.20.10 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:8374257 IMAGE-MGC_LOAD
InterPro EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  Kringle UniProtKB/Swiss-Prot
  Kringle-like UniProtKB/Swiss-Prot
  Kringle_CS UniProtKB/Swiss-Prot
  Kringle_sf UniProtKB/Swiss-Prot
  Peptidase_S1_PA UniProtKB/Swiss-Prot
  Peptidase_S1_PA_chymotrypsin UniProtKB/Swiss-Prot
  Peptidase_S1A UniProtKB/Swiss-Prot
  Serine_Proteases_S1 UniProtKB/Swiss-Prot
  Trypsin_dom UniProtKB/Swiss-Prot
  TRYPSIN_HIS UniProtKB/Swiss-Prot
  TRYPSIN_SER UniProtKB/Swiss-Prot
KEGG Report rno:292126 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156541 IMAGE-MGC_LOAD
NCBI Gene 292126 ENTREZGENE
PANTHER HYALURONAN-BINDING PROTEIN 2 UniProtKB/Swiss-Prot
  TRYPSIN-RELATED UniProtKB/Swiss-Prot
Pfam EGF UniProtKB/Swiss-Prot
  Kringle UniProtKB/Swiss-Prot
  Trypsin UniProtKB/Swiss-Prot
PhenoGen Habp2 PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/Swiss-Prot
  KRINGLE UniProtKB/Swiss-Prot
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  KRINGLE_1 UniProtKB/Swiss-Prot
  KRINGLE_2 UniProtKB/Swiss-Prot
  TRYPSIN_DOM UniProtKB/Swiss-Prot
  TRYPSIN_HIS UniProtKB/Swiss-Prot
  TRYPSIN_SER UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016659 RatGTEx
SMART EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
  SM00130 UniProtKB/Swiss-Prot
  Tryp_SPc UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF50494 UniProtKB/Swiss-Prot
  SSF57440 UniProtKB/Swiss-Prot
UniProt A0ABK0L9B9_RAT UniProtKB/TrEMBL
  A0ABK0M919_RAT UniProtKB/TrEMBL
  A2VD04 ENTREZGENE, UniProtKB/TrEMBL
  A6JI16_RAT UniProtKB/TrEMBL
  F1M8H8 ENTREZGENE, UniProtKB/TrEMBL
  F7F7R3_RAT UniProtKB/TrEMBL
  HABP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-17 Habp2  hyaluronan binding protein 2  Habp2  hyaluronic acid binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Habp2  hyaluronic acid binding protein 2  PHBP  hyaluronan-binding protein  Symbol and Name updated 1299863 APPROVED
2005-02-14 PHBP  hyaluronan-binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL