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Gene: Spata21 (spermatogenesis associated 21) Rattus norvegicus

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Symbol:

Spata21

Name:

spermatogenesis associated 21

RGD ID:

1302954

Description:

Predicted to enable calcium ion binding activity. Orthologous to human SPATA21 (spermatogenesis associated 21); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC105642; spergen-3; Spergen3; spermatogenesis-associated protein 21; spermatogenic cell-specific gene 3 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,676,224 - 158,701,567 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	158,676,288 - 158,701,798 (+)	Ensembl				GRCr8
mRatBN7.2	5	153,393,309 - 153,419,430 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,393,365 - 153,418,561 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	156,081,584 - 156,107,245 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,854,856 - 157,880,519 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,844,043 - 157,869,703 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,612,541 - 159,638,073 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,612,762 - 159,638,076 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	163,325,257 - 163,350,448 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	159,947,710 - 159,972,904 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	151,757,889 - 151,782,954 (+)	NCBI		Celera
RGSC_v3.1	5	159,957,897 - 159,983,092 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Liver Neoplasms (ISO)

polycystic ovary syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

genistein (EXP)

lead nitrate (EXP)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Nor-9-carboxy-delta9-THC (ISO)

paracetamol (EXP)

phenobarbital (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

calcium ion binding (IEA)

metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:12477932	PMID:15477360

Genomics

Comparative Map Data

Spata21
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,676,224 - 158,701,567 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	158,676,288 - 158,701,798 (+)	Ensembl				GRCr8
mRatBN7.2	5	153,393,309 - 153,419,430 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,393,365 - 153,418,561 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	156,081,584 - 156,107,245 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,854,856 - 157,880,519 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,844,043 - 157,869,703 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,612,541 - 159,638,073 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,612,762 - 159,638,076 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	163,325,257 - 163,350,448 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	159,947,710 - 159,972,904 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	151,757,889 - 151,782,954 (+)	NCBI		Celera
RGSC_v3.1	5	159,957,897 - 159,983,092 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

SPATA21
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	16,395,677 - 16,437,842 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	16,387,117 - 16,437,424 (-)	Ensembl			hg38	GRCh38
GRCh37	1	16,722,172 - 16,763,919 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	16,597,725 - 16,636,506 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	15,205,065 - 15,243,856 (-)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	15,242,519 - 15,281,244 (-)	NCBI		HuRef
CHM1_1	1	16,523,811 - 16,562,714 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	15,837,210 - 15,879,521 (-)	NCBI		T2T-CHM13v2.0

Spata21
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	140,815,631 - 140,840,071 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	140,815,644 - 140,840,071 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	141,088,320 - 141,112,760 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,088,333 - 141,112,760 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	140,644,260 - 140,668,674 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,360,421 - 140,384,835 (+)	NCBI		MGSCv36	mm8
Celera	4	142,892,188 - 142,919,321 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	73.36	NCBI

Spata21
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	1,906,700 - 1,938,439 (+)	Ensembl
ChiLan1.0	NW_004955527	1,903,607 - 1,939,020 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPATA21
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	210,487,771 - 210,522,277 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	209,736,458 - 209,770,906 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	15,536,161 - 15,548,414 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	16,525,902 - 16,565,118 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	16,526,024 - 16,558,937 (-)	Ensembl			panPan2	panpan1.1

SPATA21
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,294,837 - 81,324,509 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,296,685 - 81,324,468 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	77,830,907 - 77,860,793 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	81,940,701 - 81,970,640 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	81,940,148 - 81,970,599 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	78,693,696 - 78,723,598 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	79,710,580 - 79,740,464 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	80,778,706 - 80,808,592 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spata21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	38,027,224 - 38,050,496 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936474	3,852,003 - 3,875,204 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA21
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	75,485,870 - 75,513,996 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	75,485,728 - 75,527,175 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	69,801,019 - 69,836,722 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPATA21
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	115,889,975 - 115,933,026 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	115,891,903 - 115,929,898 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	19,391,028 - 19,411,158 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata21
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	2,500,335 - 2,533,705 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spata21
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	17,032,537 - 17,057,815 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spata21
74 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	74
Interacting mature miRNAs:	81
Transcripts:	ENSRNOT00000012147
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

RH41831

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	158,701,791 - 158,701,872 (+)	Marker Load Pipeline
mRatBN7.2	5	153,418,786 - 153,418,865 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	159,638,298 - 159,638,376	NCBI	Rnor6.0
Rnor_5.0	5	163,350,674 - 163,350,752	UniSTS	Rnor5.0
RGSC_v3.4	5	159,973,130 - 159,973,208	UniSTS	RGSC3.4
Celera	5	151,783,180 - 151,783,258	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	40	112	68	67	36	82	36	6	288	155	11	91	73	89	31	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB168097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC141489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000012147 ⟹ ENSRNOP00000012147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	158,676,288 - 158,701,798 (+)	Ensembl
mRatBN7.2 Ensembl	5	153,393,365 - 153,418,561 (+)	Ensembl
Rnor_6.0 Ensembl	5	159,612,762 - 159,638,076 (+)	Ensembl

RefSeq Acc Id:

NM_001004447 ⟹ NP_001004447

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,372 - 158,701,566 (+)	NCBI
mRatBN7.2	5	153,393,365 - 153,418,561 (+)	NCBI
Rnor_6.0	5	159,612,878 - 159,638,072 (+)	NCBI
Rnor_5.0	5	163,325,257 - 163,350,448 (+)	NCBI
RGSC_v3.4	5	159,947,710 - 159,972,904 (+)	RGD
Celera	5	151,757,889 - 151,782,954 (+)	RGD

Sequence:

show sequence

ACGTTACAGACCACAGGGGAAGAAGGAGAAACTCAGTCACGGCCACAACTGCTTGTGCCATTTG
AGAGCCTAAGTACTTCCCACAGGAAGAGCTGAGCCATACCTCACAGGGCTGTGAAGAGAATACA
GCTCAAGAACTTCCAGCAGAGAGGAGGTCATTTCCATGGGCAGTGGCTGGCTTGCCGTGGCTTA
GAAAGGAAAAGGTCCCGAGATCCTCCAGAAGCTTATGTCCCTCGATTTGGGAATCTTGCTGGCT
CCAGAACAATGGAAAACAGAAACACCCACACACACCCAGAGAACAAGGCGGAGGCTCCAACAGT
CCAATCAAGTTCTGGCCTGAGTTCCACCAAAAAGAAGACAGATCTGGAGGCCGCTGTCGCAGCC
GGTCAGAATGGACGTGCAGATGCCACTGAAAGGGACAGCAGAAAGAAGCCTGCAGCTCCCAGAG
GACCAGAGAAGGAACCCCGACACACAGCGTCATCCCAGGAGAGGTCAGGGGAGCCTCAGACCCA
GGAGCAGAGGCCCTCAGCAAGATCAAAGACAACCCAGGATGGGCCAAGGGAGCTGCAAACTGGC
CAGGAGCAAGCACGGCCTAGTGGGGATTTTGTGGCCTCTGAAGGGCGGCCACAGCCAGCCATGC
AGACCAAGGACCAGCAGAAGAGATGGCAGAGTGCCGAGGCCAAAGACGTTCAATCTACTGAGAG
CTGCCAGGGAAACACAGATCATGATCTGGGGAAGCCATGCACCTCAGATAGCAGGAGTCACCCA
CAGAAGACTAACTCCCTCAGTGAAGGAGGCCGCCCACAGGCCAGGCTGCAGGAGCCTATGCCAG
CACCTAGCTCAGGGACTCACAAGGACAACCCCCAGGAGGCAGTGCCCCCCAAGCCCAAGGTGAC
TGCAGAGGAGAAGAAGGCCCCTCCCGTTTTGCCAACTGTACCTCGAACACACAAAGACAGAGGT
GAGGCTGTGGAAAGCAAAGCATCACCGAGGCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTC
CTCCTCCAGAGGAGAGAGATGTTGAGAAGAAGGAGCTGGGCCAAGGGCAGAAGCAACGGCAGCC
GGCCTTGGCAGCTGCAGGCACCCAGGGTCCTGGGAACTTCCGACGGGGTTTCATGAAGTGCCTA
CTGGAGGTGGAAGAGCAGGAGGAAGCCACCCACAGAAGGACTCTGAAGTCCCGGGCCCTGACAG
CCAGGAGGTCCCCCAAGACTGTGACTTCTGTGCCCACCTCAGGCCCCGTCAACAGCTCTGTTCC
ACCCTTACCTCCGACCCTGCATGAACCTTCCACCTCAGCTCCAGCCACTGTCCCATCCTGGGTC
AAACCACCAGCCCCTGGGCAAGCCCCCATCCCTATGGGGACCCCTAGCTCAGTCCTGCCAACTC
CTGCCCAGGACCAGAGCTGGAGATGGCCAGAGCTCTTGCCCCAGGGCAATGAGAGAAATCTCAA
CTATGCCAAGACACGGCAGGAGTCGGAAGAGCATGGCCTCTTCAAACTGTATCAGAACTGGGAG
GAGAGGACTGAGGAGCACCTTACCCTGAAGCAGGAAGAAGCCTTCCGAAGCTACTTCGATATCT
TCAACGGTCCTGGTGAGGTGGATGCGCGGAGCCTCAAGAACATCTTACTCCTAATCGGCTTCAC
GTTTACTCCAGCCCAGGTGGAAGAAGCTCTGATGAGTGCTGATGTCAATGGAGATGGTCATGTG
GATTTCAAAGACTTTTTGGCTGTGATGACAGACACCAAGCGCTTCTTCTGCTCTGTGGAACAGA
ATGTCCTGATGGATATGTCGCCCCCGAATCCTTACACACTGTTCTTTGAGATCCTCTCTTTGCT
GGTGGAAATGCTGGCCCTGCCAGAGGTGGCCCTAGAGGAGATAACAAACTACTACCAGAAGAAG
CTGAAGGAAGGTTCTTCCAAGGCCCGAGAGATGGAAACGGCGATGGGCGGGATTCGGCAAAGGA
AGAAGATTCCTTACAGCTCTCAGCAAGTAGAGAACTTGGAAGTCCCAGAACGAAGGGTCCTCAG
GATCCTGAGCCGGCTGAAGCAGCAGAACTATGCTGCCAATCTGCAGAGCCCCTATGCCCAGGTA
CCCTGCATCCCACTCTGCCCGAGGCTGGACAAGAAGGCAGTCCGTCGAAAGCAGGCTAGCCATA
ACCATTCTGTGCTGGATCAGTGTGTCCCCACAAGCCTGGGCCCTGACCTCCATGGCTTCTTCCT
CCAGCCAGGACAGCAAGGAAGCAGGGAACACAGCTCCGACAGTAGAAAGTGGCTTAGCTCCGTG
CCAGCCCGAACCCACTGATCCTCGGGAACTCTGGCTCCACAAGTTCAAGGCCTGCAGACAGTAG
GCAGGGCCTGGATTTGGGAGCTTGCTTTCATGGCCTGGTAAGCCAATAAACACCAAGAACCTCA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063288125 ⟹ XP_063144195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,272 - 158,701,567 (+)	NCBI

RefSeq Acc Id:

XM_063288126 ⟹ XP_063144196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,224 - 158,701,567 (+)	NCBI

RefSeq Acc Id:

XM_063288127 ⟹ XP_063144197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,280 - 158,701,567 (+)	NCBI

RefSeq Acc Id:

XM_063288128 ⟹ XP_063144198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,230 - 158,701,567 (+)	NCBI

RefSeq Acc Id:

XM_063288129 ⟹ XP_063144199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,305 - 158,701,567 (+)	NCBI

RefSeq Acc Id:

XM_063288130 ⟹ XP_063144200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,264 - 158,698,114 (+)	NCBI

RefSeq Acc Id:

XM_063288131 ⟹ XP_063144201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,272 - 158,698,114 (+)	NCBI

RefSeq Acc Id:

XM_063288132 ⟹ XP_063144202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	158,676,264 - 158,700,291 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001004447	(Get FASTA)	NCBI Sequence Viewer
	XP_063144195	(Get FASTA)	NCBI Sequence Viewer
	XP_063144196	(Get FASTA)	NCBI Sequence Viewer
	XP_063144197	(Get FASTA)	NCBI Sequence Viewer
	XP_063144198	(Get FASTA)	NCBI Sequence Viewer
	XP_063144199	(Get FASTA)	NCBI Sequence Viewer
	XP_063144200	(Get FASTA)	NCBI Sequence Viewer
	XP_063144201	(Get FASTA)	NCBI Sequence Viewer
	XP_063144202	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89089	(Get FASTA)	NCBI Sequence Viewer
	BAD42380	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012147
	ENSRNOP00000012147.3
GenBank Protein	Q68A65	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001004447 ⟸ NM_001004447

- UniProtKB:

Q68A65 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MENRNTHTHPENKAEAPTVQSSSGLSSTKKKTDLEAAVAAGQNGRADATERDSRKKPAAPRGPE
KEPRHTASSQERSGEPQTQEQRPSARSKTTQDGPRELQTGQEQARPSGDFVASEGRPQPAMQTK
DQQKRWQSAEAKDVQSTESCQGNTDHDLGKPCTSDSRSHPQKTNSLSEGGRPQARLQEPMPAPS
SGTHKDNPQEAVPPKPKVTAEEKKAPPVLPTVPRTHKDRGEAVESKASPRPPPPPPSPPPPPPP
EERDVEKKELGQGQKQRQPALAAAGTQGPGNFRRGFMKCLLEVEEQEEATHRRTLKSRALTARR
SPKTVTSVPTSGPVNSSVPPLPPTLHEPSTSAPATVPSWVKPPAPGQAPIPMGTPSSVLPTPAQ
DQSWRWPELLPQGNERNLNYAKTRQESEEHGLFKLYQNWEERTEEHLTLKQEEAFRSYFDIFNG
PGEVDARSLKNILLLIGFTFTPAQVEEALMSADVNGDGHVDFKDFLAVMTDTKRFFCSVEQNVL
MDMSPPNPYTLFFEILSLLVEMLALPEVALEEITNYYQKKLKEGSSKAREMETAMGGIRQRKKI
PYSSQQVENLEVPERRVLRILSRLKQQNYAANLQSPYAQVPCIPLCPRLDKKAVRRKQASHNHS
VLDQCVPTSLGPDLHGFFLQPGQQGSREHSSDSRKWLSSVPARTH

hide sequence

Ensembl Acc Id:

ENSRNOP00000012147 ⟸ ENSRNOT00000012147

RefSeq Acc Id:	XP_063144196 ⟸ XM_063288126
- Peptide Label:	isoform X1
- UniProtKB:	Q68A65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144198 ⟸ XM_063288128
- Peptide Label:	isoform X1
- UniProtKB:	Q68A65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144202 ⟸ XM_063288132
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144200 ⟸ XM_063288130
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144195 ⟸ XM_063288125
- Peptide Label:	isoform X1
- UniProtKB:	Q68A65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144201 ⟸ XM_063288131
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063144197 ⟸ XM_063288127
- Peptide Label:	isoform X1
- UniProtKB:	Q68A65 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063144199 ⟸ XM_063288129
- Peptide Label:	isoform X1
- UniProtKB:	Q68A65 (UniProtKB/Swiss-Prot)

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q68A65-F1-model_v2	AlphaFold	Q68A65	1-685	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694219

Promoter ID:

EPDNEW_R4744

Type:

multiple initiation site

Name:

Spata21_1

Description:

spermatogenesis associated 21

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	159,612,794 - 159,612,854	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1302954	AgrOrtholog
BioCyc Gene	G2FUF-39363	BioCyc
Ensembl Genes	ENSRNOG00000009058	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000012147	ENTREZGENE
	ENSRNOT00000012147.5	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7112067	IMAGE-MGC_LOAD
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	SPT21/EFCAB3	UniProtKB/Swiss-Prot
KEGG Report	rno:366491	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105642	IMAGE-MGC_LOAD
NCBI Gene	366491	ENTREZGENE
PANTHER	PTHR47500	UniProtKB/Swiss-Prot
	SPERMATOGENESIS-ASSOCIATED PROTEIN 21	UniProtKB/Swiss-Prot
PhenoGen	Spata21	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009058	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	Formin homology 2 domain (FH2 domain)	UniProtKB/Swiss-Prot
	SSF47473	UniProtKB/Swiss-Prot
UniProt	Q68A65	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-11-17	Spata21	spermatogenesis associated 21	Spergen3	spergen-3	Symbol and Name updated	1299863	APPROVED
2005-02-14	Spergen3	spergen-3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD